Wall clock time and date at job start Tue Mar 31 2020 18:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47016 * 2 1 4 4 C 1.50694 * 109.47255 * 120.00544 * 2 1 3 5 5 O 1.21282 * 120.00538 * 120.00265 * 4 2 1 6 6 N 1.34780 * 120.00077 * 299.99709 * 4 2 1 7 7 C 1.46500 * 120.00390 * 180.02562 * 6 4 2 8 8 C 1.54412 * 129.01250 * 180.02562 * 7 6 4 9 9 C 1.54419 * 78.89086 * 180.64334 * 8 7 6 10 10 C 1.50703 * 129.01419 * 180.64405 * 9 8 7 11 11 O 1.21281 * 119.99538 * 359.97438 * 10 9 8 12 12 N 1.34769 * 119.99988 * 180.02562 * 10 9 8 13 13 C 1.47584 * 134.49063 * 180.02562 * 12 10 9 14 14 C 1.53947 * 86.11565 * 204.63541 * 13 12 10 15 15 C 1.50699 * 113.73968 * 222.04272 * 14 13 12 16 16 H 1.07998 * 120.00165 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99722 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99969 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99800 * 180.02562 * 17 15 14 20 20 H 1.48507 * 109.46673 * 90.00806 * 19 17 15 21 21 H 1.48502 * 109.47065 * 210.00473 * 19 17 15 22 22 H 1.48489 * 109.47475 * 330.00611 * 19 17 15 23 23 C 1.47577 * 134.49641 * 359.97438 * 12 10 9 24 24 C 1.54891 * 84.49409 * 43.15382 * 9 8 7 25 25 C 1.54885 * 84.49103 * 318.13307 * 9 8 7 26 26 N 1.46907 * 109.47305 * 240.00370 * 2 1 3 27 27 C 1.46897 * 110.99668 * 306.04529 * 26 2 1 28 28 C 1.46900 * 110.99690 * 69.99874 * 26 2 1 29 29 H 1.08999 * 109.46886 * 59.99876 * 1 2 3 30 30 H 1.09005 * 109.46649 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46876 * 299.99716 * 1 2 3 32 32 H 0.97004 * 119.99616 * 0.02562 * 6 4 2 33 33 H 1.08992 * 114.93459 * 68.15798 * 8 7 6 34 34 H 1.08998 * 114.98218 * 293.12337 * 8 7 6 35 35 H 1.09001 * 113.76908 * 90.33461 * 13 12 10 36 36 H 1.08997 * 113.76763 * 318.93723 * 13 12 10 37 37 H 1.08997 * 113.73914 * 90.73986 * 14 13 12 38 38 H 0.97000 * 119.99858 * 179.97438 * 18 17 15 39 39 H 1.08995 * 113.76947 * 41.05826 * 23 12 10 40 40 H 1.09005 * 113.76708 * 269.66738 * 23 12 10 41 41 H 1.09001 * 114.98080 * 69.39259 * 24 9 8 42 42 H 1.09003 * 114.97457 * 204.56822 * 24 9 8 43 43 H 1.09008 * 114.97367 * 155.43371 * 25 9 8 44 44 H 1.08998 * 114.98354 * 290.60293 * 25 9 8 45 45 H 1.09004 * 109.47407 * 60.00280 * 27 26 2 46 46 H 1.09003 * 109.47220 * 179.97438 * 27 26 2 47 47 H 1.08991 * 109.47485 * 299.99756 * 27 26 2 48 48 H 1.08997 * 109.47654 * 60.00129 * 28 26 2 49 49 H 1.08998 * 109.46975 * 180.02562 * 28 26 2 50 50 H 1.09002 * 109.47346 * 299.99948 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7297 -1.6965 1.1191 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9404 3.6507 8 6 1.9537 -0.5991 5.1370 9 6 2.8571 -1.8453 5.2612 10 6 3.3491 -2.5403 6.5045 11 8 3.0343 -2.1213 7.5982 12 7 4.1396 -3.6269 6.4011 13 6 4.7861 -4.5317 7.3713 14 6 5.8055 -4.8286 6.2566 15 6 6.1747 -6.2853 6.1443 16 1 5.7309 -7.0080 6.8130 17 6 7.0783 -6.6957 5.1871 18 7 7.6183 -5.8157 4.3725 19 14 7.5354 -8.5015 5.0475 20 1 6.6076 -9.1753 4.1038 21 1 8.9273 -8.6223 4.5442 22 1 7.4347 -9.1424 6.3831 23 6 4.7056 -4.3905 5.2722 24 6 3.6744 -1.1818 4.1250 25 6 1.9883 -2.4057 4.1079 26 7 2.0197 -0.6924 -1.1995 27 6 1.4344 -2.0354 -1.3079 28 6 1.7530 0.0974 -2.4090 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.1489 0.5384 2.5436 33 1 0.9285 -0.7389 5.4796 34 1 2.4072 0.3326 5.4751 35 1 4.1739 -5.3904 7.6469 36 1 5.2140 -4.0188 8.2327 37 1 6.6730 -4.1688 6.2682 38 1 8.2543 -6.1044 3.6994 39 1 5.0690 -3.7649 4.4570 40 1 4.0696 -5.2078 4.9318 41 1 4.2133 -0.2789 4.4123 42 1 4.2611 -1.8708 3.5172 43 1 2.4698 -3.1711 3.4990 44 1 0.9593 -2.6411 4.3792 45 1 0.3491 -1.9548 -1.3695 46 1 1.8134 -2.5257 -2.2047 47 1 1.7060 -2.6220 -0.4304 48 1 2.2561 1.0612 -2.3320 49 1 2.1251 -0.4384 -3.2823 50 1 0.6792 0.2552 -2.5105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271779660.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:57 Heat of formation + Delta-G solvation = 56.958600 kcal Electronic energy + Delta-G solvation = -29599.576357 eV Core-core repulsion = 25631.425628 eV Total energy + Delta-G solvation = -3968.150729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.23281 -40.99851 -40.53025 -38.52107 -37.95896 -35.01807 -34.64179 -31.64441 -31.06945 -28.48687 -27.69969 -27.02704 -26.92469 -26.68643 -26.64772 -25.38335 -23.56084 -21.84885 -20.90561 -20.30017 -19.29529 -18.71313 -18.25760 -17.93746 -17.38600 -16.86610 -16.63852 -16.32394 -16.17414 -15.59932 -15.51183 -15.43110 -15.24950 -15.15865 -14.89274 -14.58892 -14.14217 -13.79845 -13.58843 -13.36453 -13.25049 -13.15200 -13.07933 -12.83803 -12.81121 -12.70005 -12.66473 -12.45091 -12.39425 -12.27674 -12.25794 -12.20437 -11.58786 -11.47135 -11.42356 -11.17386 -10.85333 -10.65034 -10.53989 -10.11012 -9.61169 -9.22707 -8.17270 -6.29171 1.37977 1.45976 1.47351 1.57185 1.57455 1.62596 1.98999 2.44855 2.99580 3.08578 3.13252 3.21530 3.25872 3.28140 3.41876 3.46113 3.77974 3.98067 4.09860 4.26576 4.36064 4.37081 4.38561 4.42669 4.49666 4.56153 4.60821 4.63222 4.64354 4.65130 4.71786 4.73697 4.77153 4.81482 4.82459 4.84764 4.89979 4.99730 5.05499 5.05930 5.12991 5.20299 5.50472 5.57064 5.79467 5.94001 6.09266 6.20276 6.54909 6.78109 6.80236 7.10176 7.27479 7.41103 8.92433 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.003010 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.701163 B = 9301.360040 C =11394.149288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 H 0.133 0.867 4 C 0.513 3.487 5 O -0.552 6.552 6 N -0.661 5.661 7 C 0.123 3.877 8 C -0.059 4.059 9 C -0.170 4.170 10 C 0.585 3.415 11 O -0.586 6.586 12 N -0.633 5.633 13 C 0.111 3.889 14 C 0.024 3.976 15 C -0.530 4.530 16 H 0.068 0.932 17 C 0.019 3.981 18 N -0.919 5.919 19 Si 0.959 3.041 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.264 1.264 23 C 0.124 3.876 24 C -0.107 4.107 25 C -0.096 4.096 26 N -0.552 5.552 27 C 0.019 3.981 28 C 0.024 3.976 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.427 0.573 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.091 0.909 45 H 0.043 0.957 46 H 0.067 0.933 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.769 15.890 -11.676 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.041 4.041 3 H 0.151 0.849 4 C 0.301 3.699 5 O -0.428 6.428 6 N -0.314 5.314 7 C 0.033 3.967 8 C -0.097 4.097 9 C -0.174 4.174 10 C 0.375 3.625 11 O -0.468 6.468 12 N -0.365 5.365 13 C -0.011 4.011 14 C 0.005 3.995 15 C -0.568 4.568 16 H 0.087 0.913 17 C -0.181 4.181 18 N -0.557 5.557 19 Si 0.784 3.216 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.188 1.188 23 C 0.001 3.999 24 C -0.147 4.147 25 C -0.135 4.135 26 N -0.276 5.276 27 C -0.129 4.129 28 C -0.123 4.123 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.266 0.734 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.110 0.890 45 H 0.061 0.939 46 H 0.086 0.914 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -16.924 15.555 -11.343 25.632 hybrid contribution -0.177 -0.854 -0.211 0.898 sum -17.100 14.701 -11.554 25.338 Atomic orbital electron populations 1.22406 0.92963 1.03189 1.05243 1.21704 0.95774 0.99095 0.87532 0.84927 1.21277 0.79419 0.84374 0.84864 1.90745 1.37871 1.27573 1.86581 1.44511 1.53311 1.31729 1.01833 1.22784 0.94056 0.93480 0.86383 1.23871 0.99996 0.95786 0.90043 1.23208 1.00960 1.00068 0.93156 1.18593 0.76228 0.79460 0.88183 1.90609 1.59671 1.67220 1.29292 1.50326 1.47292 1.26047 1.12877 1.23443 0.92832 0.90584 0.94220 1.20415 0.91938 0.96533 0.90632 1.21274 1.25469 0.92619 1.17469 0.91339 1.25799 0.95369 1.01776 0.95177 1.70072 1.29859 1.35672 1.20078 0.85539 0.77256 0.80084 0.78701 1.20080 1.21228 1.18787 1.23422 0.93896 0.91770 0.90815 1.24846 0.96594 0.99625 0.93602 1.24314 0.99308 0.96812 0.93112 1.61796 1.59689 1.03453 1.02656 1.22484 0.97422 0.90323 1.02706 1.22485 1.00409 0.98406 0.90977 0.89494 0.92713 0.89042 0.73358 0.87980 0.88309 0.89409 0.91343 0.94589 0.92727 0.92858 0.90691 0.89521 0.92428 0.92022 0.89041 0.93877 0.91422 0.92541 0.90181 0.91138 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.53 8.34 71.98 0.60 -0.93 16 2 C 0.07 1.02 2.73 44.17 0.12 1.14 16 3 H 0.13 1.27 8.06 -2.38 -0.02 1.25 16 4 C 0.51 11.45 6.88 87.65 0.60 12.05 16 5 O -0.55 -18.57 14.23 -3.03 -0.04 -18.61 16 6 N -0.66 -11.47 5.61 -470.60 -2.64 -14.11 16 7 C 0.12 2.90 3.92 -6.34 -0.02 2.88 16 8 C -0.06 -1.32 7.78 30.61 0.24 -1.08 16 9 C -0.17 -5.48 3.11 -63.68 -0.20 -5.68 16 10 C 0.59 23.89 8.17 87.66 0.72 24.61 16 11 O -0.59 -26.52 17.82 -3.03 -0.05 -26.57 16 12 N -0.63 -27.16 3.61 -836.76 -3.02 -30.18 16 13 C 0.11 4.75 8.39 86.48 0.73 5.48 16 14 C 0.02 1.19 3.62 -10.87 -0.04 1.15 16 15 C -0.53 -27.77 8.77 25.60 0.22 -27.54 16 16 H 0.07 3.44 7.81 -2.91 -0.02 3.42 16 17 C 0.02 1.02 5.46 84.66 0.46 1.48 16 18 N -0.92 -52.46 13.27 21.45 0.28 -52.18 16 19 Si 0.96 42.24 29.54 68.60 2.03 44.27 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 23 C 0.12 5.62 8.17 86.49 0.71 6.33 16 24 C -0.11 -3.32 7.94 31.90 0.25 -3.06 16 25 C -0.10 -2.80 7.76 31.07 0.24 -2.56 16 26 N -0.55 -10.34 4.71 -927.73 -4.37 -14.70 16 27 C 0.02 0.38 8.67 127.69 1.11 1.48 16 28 C 0.02 0.29 9.36 127.69 1.20 1.48 16 29 H 0.09 0.49 6.69 -2.39 -0.02 0.48 16 30 H 0.05 0.66 6.33 -2.38 -0.02 0.64 16 31 H 0.09 0.38 7.56 -2.39 -0.02 0.36 16 32 H 0.43 3.61 8.25 -92.71 -0.76 2.84 16 33 H 0.10 1.93 7.94 -2.39 -0.02 1.91 16 34 H 0.10 1.96 7.91 -2.39 -0.02 1.94 16 35 H 0.09 3.54 8.09 -2.39 -0.02 3.52 16 36 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 37 H 0.04 1.97 8.13 -2.39 -0.02 1.95 16 38 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.05 2.53 7.63 -2.39 -0.02 2.51 16 40 H 0.07 3.39 8.09 -2.38 -0.02 3.37 16 41 H 0.09 2.44 7.91 -2.39 -0.02 2.42 16 42 H 0.06 2.16 7.45 -2.39 -0.02 2.14 16 43 H 0.06 2.15 7.97 -2.38 -0.02 2.13 16 44 H 0.09 2.30 7.93 -2.39 -0.02 2.28 16 45 H 0.04 0.69 6.21 -2.39 -0.01 0.67 16 46 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 47 H 0.06 1.54 5.88 -2.39 -0.01 1.53 16 48 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 49 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 50 H 0.05 0.37 6.62 -2.39 -0.02 0.36 16 Total: -1.00 -72.62 402.43 -0.69 -73.32 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.18 Total: 21.54 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 6.93 Total: 17.23 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -9.74 Total: -111.17 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -0.10 Total: -45.19 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -72.62 -0.69 -73.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271779660.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.275 kcal (2) G-P(sol) polarization free energy of solvation -72.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds