Wall clock time and date at job start Tue Mar 31 2020 18:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47146 * 2 1 4 4 C 1.50701 * 109.47478 * 120.00924 * 2 1 3 5 5 O 1.21282 * 120.00289 * 119.99519 * 4 2 1 6 6 N 1.34781 * 119.99510 * 300.00020 * 4 2 1 7 7 C 1.48121 * 127.04269 * 354.92039 * 6 4 2 8 8 C 1.54948 * 103.25440 * 219.23030 * 7 6 4 9 9 C 1.54575 * 102.86309 * 322.57122 * 8 7 6 10 10 H 1.08998 * 117.58675 * 242.93767 * 9 8 7 11 11 C 1.55076 * 118.28196 * 84.91198 * 9 8 7 12 12 C 1.47524 * 127.04381 * 174.93099 * 6 4 2 13 13 C 1.50704 * 117.36550 * 295.05588 * 12 6 4 14 14 O 1.21289 * 119.99761 * 144.56940 * 13 12 6 15 15 N 1.34768 * 120.00092 * 324.56326 * 13 12 6 16 16 C 1.47066 * 136.06052 * 4.54685 * 15 13 12 17 17 C 1.53235 * 88.08529 * 207.19960 * 16 15 13 18 18 C 1.50698 * 114.32849 * 220.46475 * 17 16 15 19 19 H 1.07997 * 119.99702 * 93.75995 * 18 17 16 20 20 C 1.37883 * 120.00364 * 273.76129 * 18 17 16 21 21 N 1.31511 * 119.99483 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47320 * 59.99981 * 22 20 18 24 24 H 1.48496 * 109.47023 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47145 * 299.99939 * 22 20 18 26 26 C 1.47065 * 136.05754 * 184.91023 * 15 13 12 27 27 N 1.46902 * 109.46788 * 240.00446 * 2 1 3 28 28 C 1.46901 * 111.00317 * 306.04745 * 27 2 1 29 29 C 1.46897 * 111.00020 * 69.99885 * 27 2 1 30 30 H 1.09001 * 109.47149 * 299.99235 * 1 2 3 31 31 H 1.08998 * 109.47335 * 59.99492 * 1 2 3 32 32 H 1.09004 * 109.47373 * 179.97438 * 1 2 3 33 33 H 1.09002 * 110.65642 * 100.79493 * 7 6 4 34 34 H 1.08998 * 110.80320 * 337.74254 * 7 6 4 35 35 H 1.09008 * 110.73222 * 80.91880 * 8 7 6 36 36 H 1.08997 * 110.73082 * 204.22690 * 8 7 6 37 37 H 1.09000 * 117.22393 * 161.11930 * 11 9 8 38 38 H 1.09001 * 117.96900 * 15.88763 * 11 9 8 39 39 H 1.09004 * 113.46434 * 321.93222 * 16 15 13 40 40 H 1.08993 * 113.47360 * 92.36818 * 16 15 13 41 41 H 1.09004 * 114.01892 * 87.71421 * 17 16 15 42 42 H 0.97001 * 119.99485 * 180.02562 * 21 20 18 43 43 H 1.09003 * 113.47043 * 267.62521 * 26 15 13 44 44 H 1.09002 * 113.46665 * 38.01037 * 26 15 13 45 45 H 1.09001 * 109.47163 * 59.99370 * 28 27 2 46 46 H 1.09002 * 109.47543 * 180.02562 * 28 27 2 47 47 H 1.09001 * 109.46718 * 300.00104 * 28 27 2 48 48 H 1.09005 * 109.47260 * 60.00347 * 29 27 2 49 49 H 1.09003 * 109.47612 * 179.97438 * 29 27 2 50 50 H 1.08999 * 109.47473 * 299.99952 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1189 6 7 1.7068 -0.2502 2.4545 7 6 0.9591 0.9883 2.7723 8 6 1.6913 1.5339 4.0241 9 6 2.0431 0.2472 4.8052 10 1 1.5977 0.1178 5.7915 11 6 3.3445 -0.5077 4.4294 12 6 2.0222 -0.8766 3.7524 13 6 1.3911 -2.2127 4.0484 14 8 2.0064 -3.0482 4.6765 15 7 0.1431 -2.4792 3.6152 16 6 -0.8594 -1.7929 2.7865 17 6 -1.9426 -2.5592 3.5530 18 6 -3.0756 -3.0585 2.6939 19 1 -3.0465 -4.0598 2.2904 20 6 -4.1493 -2.2370 2.4230 21 7 -4.1849 -1.0178 2.9148 22 14 -5.5532 -2.8557 1.3575 23 1 -6.1666 -4.0503 1.9915 24 1 -6.5769 -1.7889 1.2191 25 1 -5.0326 -3.2200 0.0153 26 6 -0.8182 -3.5816 3.7686 27 7 2.0196 -0.6924 -1.1995 28 6 1.4342 -2.0354 -1.3081 29 6 1.7528 0.0974 -2.4090 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.0813 0.7606 3.0041 34 1 1.0217 1.7002 1.9493 35 1 2.5955 2.0716 3.7386 36 1 1.0302 2.1725 4.6100 37 1 3.7453 -1.2065 5.1637 38 1 4.0863 0.0195 3.8294 39 1 -0.8938 -0.7157 2.9499 40 1 -0.8049 -2.0579 1.7307 41 1 -2.2764 -2.0630 4.4644 42 1 -4.9404 -0.4400 2.7245 43 1 -0.7527 -4.3281 2.9770 44 1 -0.8170 -4.0231 4.7653 45 1 0.3489 -1.9548 -1.3695 46 1 1.8138 -2.5260 -2.2044 47 1 1.7058 -2.6221 -0.4305 48 1 2.2561 1.0612 -2.3320 49 1 2.1257 -0.4380 -3.2823 50 1 0.6791 0.2552 -2.5105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271779986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:47 Heat of formation + Delta-G solvation = 32.951429 kcal Electronic energy + Delta-G solvation = -31941.682728 eV Core-core repulsion = 27972.490969 eV Total energy + Delta-G solvation = -3969.191758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98267 -39.32569 -38.52140 -36.93787 -36.62704 -33.35418 -32.73760 -30.64714 -30.39137 -29.15086 -27.54746 -26.01674 -25.45531 -24.94678 -23.84059 -23.30221 -21.86556 -20.92885 -20.01447 -19.45859 -17.69634 -17.31043 -16.69684 -16.30085 -16.16886 -15.81128 -15.13815 -14.89735 -14.73096 -14.53245 -14.44714 -14.13430 -13.83761 -13.57575 -13.31308 -13.18801 -12.95878 -12.52858 -12.46870 -12.22501 -12.19176 -11.99532 -11.87659 -11.74828 -11.56151 -11.41903 -11.34006 -11.15230 -11.09347 -11.00592 -10.91227 -10.60454 -10.44959 -10.29598 -9.60486 -9.48366 -9.27938 -9.09999 -8.65541 -8.50477 -8.28400 -7.88302 -6.25506 -4.30133 2.53700 2.76153 2.98726 3.19543 3.24882 3.27636 3.46628 3.73788 3.95168 4.26888 4.41906 4.44285 4.66608 4.83463 4.92224 4.97402 5.02328 5.05710 5.09595 5.11228 5.22117 5.29687 5.47696 5.51215 5.56072 5.62408 5.67815 5.69595 5.72398 5.76854 5.81029 5.84744 5.98573 6.10836 6.13791 6.19104 6.21848 6.27788 6.34516 6.40495 6.53467 6.63239 6.77031 6.88602 6.99786 7.48160 7.60071 7.72525 8.11952 8.32212 8.48036 8.73009 8.75377 9.36425 10.84138 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.005464 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.023152 B = 5122.942049 C = 6669.471165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.071 3.929 3 H 0.103 0.897 4 C 0.541 3.459 5 O -0.510 6.510 6 N -0.586 5.586 7 C 0.092 3.908 8 C -0.105 4.105 9 C -0.140 4.140 10 H 0.128 0.872 11 C -0.115 4.115 12 C 0.066 3.934 13 C 0.574 3.426 14 O -0.556 6.556 15 N -0.633 5.633 16 C 0.107 3.893 17 C 0.035 3.965 18 C -0.516 4.516 19 H 0.062 0.938 20 C 0.071 3.929 21 N -0.886 5.886 22 Si 0.893 3.107 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.276 1.276 26 C 0.100 3.900 27 N -0.524 5.524 28 C 0.012 3.988 29 C 0.023 3.977 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.264 0.736 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.032 0.968 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.066 0.934 49 H 0.070 0.930 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.745 10.059 -4.050 13.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.041 4.041 3 H 0.121 0.879 4 C 0.329 3.671 5 O -0.383 6.383 6 N -0.322 5.322 7 C -0.030 4.030 8 C -0.143 4.143 9 C -0.159 4.159 10 H 0.146 0.854 11 C -0.154 4.154 12 C -0.023 4.023 13 C 0.361 3.639 14 O -0.435 6.435 15 N -0.365 5.365 16 C -0.016 4.016 17 C 0.015 3.985 18 C -0.554 4.554 19 H 0.080 0.920 20 C -0.133 4.133 21 N -0.522 5.522 22 Si 0.720 3.280 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.022 4.022 27 N -0.247 5.247 28 C -0.135 4.135 29 C -0.125 4.125 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.134 0.866 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.050 0.950 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.085 0.915 49 H 0.089 0.911 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.063 9.178 -3.824 14.147 hybrid contribution -1.755 -0.109 -0.851 1.953 sum 8.308 9.069 -4.675 13.158 Atomic orbital electron populations 1.22575 0.94245 1.04502 1.03649 1.21560 0.94825 0.98314 0.89427 0.87910 1.20158 0.79760 0.84617 0.82542 1.90696 1.36419 1.25971 1.85258 1.48243 1.56185 1.24654 1.03162 1.23034 0.97108 0.85330 0.97501 1.22407 1.00877 0.95609 0.95363 1.24122 1.02004 0.91533 0.98244 0.85443 1.23696 0.89982 1.00615 1.01098 1.21532 1.03087 0.93662 0.84057 1.18718 0.79221 0.86466 0.79486 1.90643 1.61676 1.47585 1.43608 1.49793 1.12600 1.24148 1.49942 1.23607 0.85220 0.97631 0.95113 1.20315 0.90153 0.91259 0.96737 1.20859 1.03250 1.00087 1.31201 0.91965 1.24979 0.97873 0.94842 0.95556 1.69930 1.31277 1.07035 1.44005 0.86636 0.81742 0.78650 0.80930 1.19983 1.21172 1.20122 1.23369 0.86434 0.92153 1.00222 1.61921 1.58542 1.03220 1.01049 1.22624 0.97087 0.89924 1.03912 1.22431 0.99468 0.98241 0.92353 0.90507 0.91383 0.90635 0.89209 0.89568 0.90289 0.88979 0.86575 0.87964 0.92206 0.91550 0.91390 0.92628 0.91031 0.92393 0.94971 0.91624 0.89438 0.91526 0.91115 0.95083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 8.16 37.16 0.30 -2.17 16 2 C 0.07 0.93 2.04 -68.86 -0.14 0.79 16 3 H 0.10 1.11 7.71 -51.93 -0.40 0.71 16 4 C 0.54 8.95 6.94 -10.98 -0.08 8.87 16 5 O -0.51 -10.54 14.72 5.56 0.08 -10.46 16 6 N -0.59 -8.79 2.13 -156.27 -0.33 -9.12 16 7 C 0.09 1.06 4.94 -2.12 -0.01 1.05 16 8 C -0.10 -1.01 6.88 -24.88 -0.17 -1.18 16 9 C -0.14 -1.76 7.01 -88.17 -0.62 -2.38 16 10 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 11 C -0.12 -1.61 9.92 -25.60 -0.25 -1.87 16 12 C 0.07 1.10 2.29 -131.85 -0.30 0.80 16 13 C 0.57 12.11 7.94 -10.99 -0.09 12.03 16 14 O -0.56 -13.30 17.28 5.55 0.10 -13.20 16 15 N -0.63 -13.39 3.69 -185.42 -0.68 -14.07 16 16 C 0.11 2.20 7.10 -8.66 -0.06 2.14 16 17 C 0.03 0.79 3.77 -91.40 -0.34 0.45 16 18 C -0.52 -12.83 8.83 -34.44 -0.30 -13.13 16 19 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -22.81 13.26 55.43 0.74 -22.08 16 22 Si 0.89 19.56 29.54 -169.99 -5.02 14.54 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 26 C 0.10 2.16 8.19 -8.52 -0.07 2.09 16 27 N -0.52 -7.15 4.70 -244.58 -1.15 -8.30 16 28 C 0.01 0.18 8.67 60.07 0.52 0.70 16 29 C 0.02 0.24 9.36 60.06 0.56 0.80 16 30 H 0.08 0.98 5.60 -51.93 -0.29 0.69 16 31 H 0.07 0.77 6.69 -51.93 -0.35 0.42 16 32 H 0.07 1.17 5.09 -51.93 -0.26 0.91 16 33 H 0.09 1.17 5.41 -51.93 -0.28 0.89 16 34 H 0.09 0.76 6.86 -51.93 -0.36 0.41 16 35 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.12 1.67 7.86 -51.93 -0.41 1.27 16 38 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 39 H 0.06 1.18 5.25 -51.93 -0.27 0.91 16 40 H 0.07 1.43 6.77 -51.93 -0.35 1.08 16 41 H 0.07 1.69 8.11 -51.93 -0.42 1.27 16 42 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 43 H 0.07 1.53 8.10 -51.93 -0.42 1.11 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.03 0.46 6.21 -51.93 -0.32 0.13 16 46 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 47 H 0.09 1.56 5.88 -51.93 -0.31 1.26 16 48 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 49 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 50 H 0.03 0.30 6.62 -51.93 -0.34 -0.04 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -31.49 387.48 -9.30 -40.78 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.71 Total: 5.42 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -1.15 Total: 10.66 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -1.43 Total: -53.57 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: 0.18 Total: -23.67 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.49 -9.30 -40.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271779986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.733 kcal (2) G-P(sol) polarization free energy of solvation -31.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds