Wall clock time and date at job start Tue Mar 31 2020 18:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47146 * 2 1 4 4 C 1.50701 * 109.47478 * 120.00924 * 2 1 3 5 5 O 1.21282 * 120.00289 * 119.99519 * 4 2 1 6 6 N 1.34781 * 119.99510 * 300.00020 * 4 2 1 7 7 C 1.48121 * 127.04269 * 354.92039 * 6 4 2 8 8 C 1.54948 * 103.25440 * 219.23030 * 7 6 4 9 9 C 1.54575 * 102.86309 * 322.57122 * 8 7 6 10 10 H 1.08998 * 117.58675 * 242.93767 * 9 8 7 11 11 C 1.55076 * 118.28196 * 84.91198 * 9 8 7 12 12 C 1.47524 * 127.04381 * 174.93099 * 6 4 2 13 13 C 1.50704 * 117.36550 * 295.05588 * 12 6 4 14 14 O 1.21289 * 119.99761 * 144.56940 * 13 12 6 15 15 N 1.34768 * 120.00092 * 324.56326 * 13 12 6 16 16 C 1.47066 * 136.06052 * 4.54685 * 15 13 12 17 17 C 1.53235 * 88.08529 * 207.19960 * 16 15 13 18 18 C 1.50698 * 114.32849 * 220.46475 * 17 16 15 19 19 H 1.07997 * 119.99702 * 93.75995 * 18 17 16 20 20 C 1.37883 * 120.00364 * 273.76129 * 18 17 16 21 21 N 1.31511 * 119.99483 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00007 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47320 * 59.99981 * 22 20 18 24 24 H 1.48496 * 109.47023 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47145 * 299.99939 * 22 20 18 26 26 C 1.47065 * 136.05754 * 184.91023 * 15 13 12 27 27 N 1.46902 * 109.46788 * 240.00446 * 2 1 3 28 28 C 1.46901 * 111.00317 * 306.04745 * 27 2 1 29 29 C 1.46897 * 111.00020 * 69.99885 * 27 2 1 30 30 H 1.09001 * 109.47149 * 299.99235 * 1 2 3 31 31 H 1.08998 * 109.47335 * 59.99492 * 1 2 3 32 32 H 1.09004 * 109.47373 * 179.97438 * 1 2 3 33 33 H 1.09002 * 110.65642 * 100.79493 * 7 6 4 34 34 H 1.08998 * 110.80320 * 337.74254 * 7 6 4 35 35 H 1.09008 * 110.73222 * 80.91880 * 8 7 6 36 36 H 1.08997 * 110.73082 * 204.22690 * 8 7 6 37 37 H 1.09000 * 117.22393 * 161.11930 * 11 9 8 38 38 H 1.09001 * 117.96900 * 15.88763 * 11 9 8 39 39 H 1.09004 * 113.46434 * 321.93222 * 16 15 13 40 40 H 1.08993 * 113.47360 * 92.36818 * 16 15 13 41 41 H 1.09004 * 114.01892 * 87.71421 * 17 16 15 42 42 H 0.97001 * 119.99485 * 180.02562 * 21 20 18 43 43 H 1.09003 * 113.47043 * 267.62521 * 26 15 13 44 44 H 1.09002 * 113.46665 * 38.01037 * 26 15 13 45 45 H 1.09001 * 109.47163 * 59.99370 * 28 27 2 46 46 H 1.09002 * 109.47543 * 180.02562 * 28 27 2 47 47 H 1.09001 * 109.46718 * 300.00104 * 28 27 2 48 48 H 1.09005 * 109.47260 * 60.00347 * 29 27 2 49 49 H 1.09003 * 109.47612 * 179.97438 * 29 27 2 50 50 H 1.08999 * 109.47473 * 299.99952 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 2.7296 -1.6967 1.1189 6 7 1.7068 -0.2502 2.4545 7 6 0.9591 0.9883 2.7723 8 6 1.6913 1.5339 4.0241 9 6 2.0431 0.2472 4.8052 10 1 1.5977 0.1178 5.7915 11 6 3.3445 -0.5077 4.4294 12 6 2.0222 -0.8766 3.7524 13 6 1.3911 -2.2127 4.0484 14 8 2.0064 -3.0482 4.6765 15 7 0.1431 -2.4792 3.6152 16 6 -0.8594 -1.7929 2.7865 17 6 -1.9426 -2.5592 3.5530 18 6 -3.0756 -3.0585 2.6939 19 1 -3.0465 -4.0598 2.2904 20 6 -4.1493 -2.2370 2.4230 21 7 -4.1849 -1.0178 2.9148 22 14 -5.5532 -2.8557 1.3575 23 1 -6.1666 -4.0503 1.9915 24 1 -6.5769 -1.7889 1.2191 25 1 -5.0326 -3.2200 0.0153 26 6 -0.8182 -3.5816 3.7686 27 7 2.0196 -0.6924 -1.1995 28 6 1.4342 -2.0354 -1.3081 29 6 1.7528 0.0974 -2.4090 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.0813 0.7606 3.0041 34 1 1.0217 1.7002 1.9493 35 1 2.5955 2.0716 3.7386 36 1 1.0302 2.1725 4.6100 37 1 3.7453 -1.2065 5.1637 38 1 4.0863 0.0195 3.8294 39 1 -0.8938 -0.7157 2.9499 40 1 -0.8049 -2.0579 1.7307 41 1 -2.2764 -2.0630 4.4644 42 1 -4.9404 -0.4400 2.7245 43 1 -0.7527 -4.3281 2.9770 44 1 -0.8170 -4.0231 4.7653 45 1 0.3489 -1.9548 -1.3695 46 1 1.8138 -2.5260 -2.2044 47 1 1.7058 -2.6221 -0.4305 48 1 2.2561 1.0612 -2.3320 49 1 2.1257 -0.4380 -3.2823 50 1 0.6791 0.2552 -2.5105 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271779986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:46 Heat of formation + Delta-G solvation = 12.006443 kcal Electronic energy + Delta-G solvation = -31942.590971 eV Core-core repulsion = 27972.490969 eV Total energy + Delta-G solvation = -3970.100001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.23556 -40.78488 -39.87118 -38.58153 -37.82066 -34.70137 -34.46991 -31.71298 -31.54174 -30.73840 -28.53726 -27.52911 -27.06255 -26.45076 -24.97413 -24.47255 -23.21518 -22.00852 -21.43312 -20.79779 -19.21094 -18.80654 -18.39436 -17.57821 -17.41078 -17.07516 -16.62112 -16.35507 -16.15509 -16.08322 -15.58890 -15.23374 -15.10612 -14.88957 -14.67016 -14.31427 -14.13384 -14.00988 -13.84577 -13.53221 -13.36579 -13.21428 -13.14232 -12.99016 -12.88323 -12.78528 -12.68996 -12.61719 -12.49056 -12.25871 -12.19366 -12.05410 -11.90028 -11.54957 -11.25826 -11.09213 -10.76565 -10.68845 -10.51786 -9.75999 -9.65528 -9.30380 -8.18526 -6.28754 1.17010 1.45391 1.47338 1.52497 1.54078 1.77184 1.88932 2.43678 2.49373 2.95995 3.10459 3.32145 3.41037 3.47156 3.67440 3.82894 3.95260 3.99156 4.13940 4.18214 4.23387 4.28469 4.32615 4.35836 4.41650 4.46960 4.56270 4.59465 4.60744 4.62081 4.66730 4.72260 4.74453 4.74487 4.82781 4.96561 5.01073 5.02816 5.03841 5.05449 5.18210 5.21092 5.32146 5.53692 5.77923 5.85613 6.04164 6.19970 6.46879 6.76193 6.79781 7.02987 7.14368 7.40076 8.90970 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009190 B = 0.005464 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.023152 B = 5122.942049 C = 6669.471165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 H 0.138 0.862 4 C 0.532 3.468 5 O -0.563 6.563 6 N -0.580 5.580 7 C 0.085 3.915 8 C -0.092 4.092 9 C -0.108 4.108 10 H 0.132 0.868 11 C -0.110 4.110 12 C 0.024 3.976 13 C 0.563 3.437 14 O -0.595 6.595 15 N -0.637 5.637 16 C 0.131 3.869 17 C 0.032 3.968 18 C -0.534 4.534 19 H 0.057 0.943 20 C 0.034 3.966 21 N -0.906 5.906 22 Si 0.950 3.050 23 H -0.275 1.275 24 H -0.280 1.280 25 H -0.273 1.273 26 C 0.098 3.902 27 N -0.540 5.540 28 C 0.021 3.979 29 C 0.023 3.977 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.267 0.733 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.031 0.969 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.589 13.377 -5.170 16.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.033 4.033 3 H 0.156 0.844 4 C 0.322 3.678 5 O -0.441 6.441 6 N -0.315 5.315 7 C -0.035 4.035 8 C -0.130 4.130 9 C -0.127 4.127 10 H 0.150 0.850 11 C -0.148 4.148 12 C -0.066 4.066 13 C 0.353 3.647 14 O -0.477 6.477 15 N -0.368 5.368 16 C 0.009 3.991 17 C 0.012 3.988 18 C -0.572 4.572 19 H 0.075 0.925 20 C -0.167 4.167 21 N -0.543 5.543 22 Si 0.775 3.225 23 H -0.201 1.201 24 H -0.205 1.205 25 H -0.198 1.198 26 C -0.024 4.024 27 N -0.264 5.264 28 C -0.127 4.127 29 C -0.124 4.124 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.091 0.909 34 H 0.140 0.860 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.122 0.878 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.049 0.951 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.106 0.894 49 H 0.095 0.905 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.887 12.540 -4.940 16.716 hybrid contribution -1.691 -1.203 -0.446 2.123 sum 8.196 11.338 -5.387 14.991 Atomic orbital electron populations 1.22503 0.94066 1.02690 1.04894 1.21613 0.94643 0.99270 0.87749 0.84420 1.20917 0.79017 0.84117 0.83794 1.90673 1.38979 1.28289 1.86124 1.48352 1.55754 1.25247 1.02179 1.23286 0.95911 0.84489 0.99824 1.22513 1.02273 0.94179 0.94010 1.24405 0.99584 0.91305 0.97394 0.85050 1.23743 0.90035 1.00595 1.00444 1.21522 1.05379 0.93080 0.86597 1.19657 0.78658 0.88068 0.78363 1.90598 1.62405 1.49423 1.45312 1.49881 1.13046 1.23834 1.50070 1.23255 0.83856 0.97968 0.94005 1.20166 0.90481 0.92055 0.96061 1.21057 1.04301 1.00103 1.31745 0.92526 1.25574 0.99699 0.94985 0.96483 1.70000 1.31941 1.07695 1.44679 0.85745 0.79162 0.78132 0.79444 1.20052 1.20515 1.19775 1.23289 0.86650 0.92309 1.00170 1.61899 1.58834 1.03091 1.02532 1.22439 0.97023 0.90758 1.02513 1.22527 1.00249 0.98690 0.90910 0.90180 0.89124 0.93927 0.90903 0.86014 0.87732 0.86281 0.87792 0.86309 0.90884 0.92616 0.93416 0.92374 0.91388 0.92284 0.95101 0.90405 0.93413 0.89432 0.90482 0.94379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.41 8.16 71.98 0.59 -3.83 16 2 C 0.08 1.92 2.04 44.17 0.09 2.01 16 3 H 0.14 2.38 7.71 -2.39 -0.02 2.36 16 4 C 0.53 17.33 6.94 87.66 0.61 17.94 16 5 O -0.56 -24.06 14.72 -3.04 -0.04 -24.10 16 6 N -0.58 -16.67 2.13 -766.72 -1.63 -18.30 16 7 C 0.09 1.68 4.94 86.73 0.43 2.11 16 8 C -0.09 -1.38 6.88 31.80 0.22 -1.16 16 9 C -0.11 -2.47 7.01 -9.21 -0.06 -2.53 16 10 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 11 C -0.11 -2.96 9.92 31.33 0.31 -2.65 16 12 C 0.02 0.79 2.29 3.02 0.01 0.80 16 13 C 0.56 24.57 7.94 87.66 0.70 25.27 16 14 O -0.60 -29.83 17.28 -3.06 -0.05 -29.88 16 15 N -0.64 -27.97 3.69 -858.93 -3.17 -31.14 16 16 C 0.13 5.55 7.10 83.08 0.59 6.14 16 17 C 0.03 1.50 3.77 -11.30 -0.04 1.46 16 18 C -0.53 -27.08 8.83 25.60 0.23 -26.85 16 19 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 20 C 0.03 1.71 5.46 84.66 0.46 2.17 16 21 N -0.91 -46.37 13.26 21.45 0.28 -46.08 16 22 Si 0.95 39.80 29.54 68.60 2.03 41.83 16 23 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 26 C 0.10 4.45 8.19 83.17 0.68 5.13 16 27 N -0.54 -13.96 4.70 -927.71 -4.36 -18.33 16 28 C 0.02 0.62 8.67 127.69 1.11 1.73 16 29 C 0.02 0.41 9.36 127.69 1.20 1.60 16 30 H 0.08 1.86 5.60 -2.39 -0.01 1.84 16 31 H 0.09 1.76 6.69 -2.39 -0.02 1.75 16 32 H 0.04 1.32 5.09 -2.38 -0.01 1.31 16 33 H 0.07 1.72 5.41 -2.39 -0.01 1.71 16 34 H 0.12 1.55 6.86 -2.39 -0.02 1.54 16 35 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.10 3.03 7.86 -2.39 -0.02 3.01 16 38 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.07 2.88 5.25 -2.38 -0.01 2.87 16 40 H 0.06 2.49 6.77 -2.39 -0.02 2.47 16 41 H 0.05 2.45 8.11 -2.38 -0.02 2.43 16 42 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 43 H 0.07 3.09 8.10 -2.39 -0.02 3.07 16 44 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.03 0.89 6.21 -2.39 -0.01 0.88 16 46 H 0.08 2.02 8.12 -2.39 -0.02 2.00 16 47 H 0.05 1.81 5.88 -2.39 -0.01 1.79 16 48 H 0.09 1.18 8.12 -2.38 -0.02 1.16 16 49 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 50 H 0.04 0.62 6.62 -2.39 -0.02 0.60 16 Total: -1.00 -72.11 387.48 1.10 -71.02 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.95 Total: 25.65 kcal Atomic # 6 Polarization: 22.24 SS G_CDS: 7.10 Total: 29.34 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -8.89 Total: -113.85 kcal Atomic # 8 Polarization: -53.89 SS G_CDS: -0.10 Total: -53.98 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -72.11 1.10 -71.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271779986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.024 kcal (2) G-P(sol) polarization free energy of solvation -72.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds