Wall clock time and date at job start Tue Mar 31 2020 19:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.47145 * 2 1 4 4 C 1.46898 * 111.00245 * 71.77362 * 3 2 1 5 5 C 1.46893 * 110.99765 * 195.73266 * 3 2 1 6 6 H 1.08998 * 109.47473 * 294.66569 * 5 3 2 7 7 C 1.50702 * 109.47322 * 174.66633 * 5 3 2 8 8 O 1.21284 * 119.99456 * 339.99952 * 7 5 3 9 9 N 1.34773 * 120.00417 * 159.99863 * 7 5 3 10 10 C 1.46504 * 120.00149 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47178 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47457 * 305.00380 * 11 10 9 13 13 O 1.42904 * 109.46856 * 64.99929 * 11 10 9 14 14 C 1.52998 * 109.47150 * 184.99410 * 11 10 9 15 15 N 1.46499 * 109.47197 * 180.02562 * 14 11 10 16 16 C 1.36934 * 120.00140 * 180.02562 * 15 14 11 17 17 H 1.08007 * 120.00040 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00258 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99968 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99897 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46907 * 89.99686 * 20 18 16 22 22 H 1.48498 * 109.47166 * 210.00146 * 20 18 16 23 23 H 1.48497 * 109.46938 * 330.00177 * 20 18 16 24 24 C 1.50707 * 109.47723 * 54.66870 * 5 3 2 25 25 C 1.38228 * 119.99725 * 45.82591 * 24 5 3 26 26 C 1.38234 * 119.99989 * 179.81660 * 25 24 5 27 27 C 1.38236 * 120.00019 * 0.39506 * 26 25 24 28 28 C 1.38237 * 119.99556 * 359.86301 * 27 26 25 29 29 C 1.38226 * 120.00261 * 359.95210 * 28 27 26 30 30 H 1.09006 * 109.47034 * 54.74640 * 1 2 3 31 31 H 1.08995 * 109.47027 * 174.74282 * 1 2 3 32 32 H 1.08994 * 109.47607 * 294.75049 * 1 2 3 33 33 H 1.08990 * 109.47283 * 239.99222 * 2 1 3 34 34 H 1.09003 * 109.46792 * 119.99155 * 2 1 3 35 35 H 1.08996 * 109.46573 * 180.02562 * 4 3 2 36 36 H 1.08991 * 109.47138 * 300.00240 * 4 3 2 37 37 H 1.09000 * 109.46851 * 60.00481 * 4 3 2 38 38 H 0.96996 * 119.99961 * 0.02562 * 9 7 5 39 39 H 1.09000 * 109.46947 * 59.99968 * 10 9 7 40 40 H 1.08998 * 109.46535 * 299.99905 * 10 9 7 41 41 H 0.96701 * 113.99903 * 59.99990 * 13 11 10 42 42 H 1.08993 * 109.47733 * 300.00802 * 14 11 10 43 43 H 1.09005 * 109.46654 * 60.00471 * 14 11 10 44 44 H 0.97002 * 119.99929 * 0.02562 * 15 14 11 45 45 H 0.97000 * 119.99390 * 179.97438 * 19 18 16 46 46 H 1.08007 * 120.00313 * 0.02562 * 25 24 5 47 47 H 1.08002 * 120.00492 * 180.23807 * 26 25 24 48 48 H 1.07997 * 120.00010 * 179.83385 * 27 26 25 49 49 H 1.08000 * 119.99775 * 179.97438 * 28 27 26 50 50 H 1.08000 * 120.00287 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7908 2.0244 1.3026 5 6 3.4397 1.4413 -0.3718 6 1 4.0357 0.9440 0.3934 7 6 3.8718 2.8803 -0.4887 8 8 3.0427 3.7515 -0.6453 9 7 5.1794 3.1991 -0.4192 10 6 5.5994 4.5981 -0.5322 11 6 7.1229 4.6838 -0.4207 12 1 7.4470 4.2061 0.5037 13 8 7.7202 4.0185 -1.5355 14 6 7.5519 6.1524 -0.4137 15 7 9.0107 6.2345 -0.3076 16 6 9.6276 7.4568 -0.2820 17 1 9.0387 8.3603 -0.3397 18 6 11.0099 7.5346 -0.1809 19 7 11.6028 8.7094 -0.1559 20 14 12.0285 5.9720 -0.0804 21 1 12.4017 5.5355 -1.4499 22 1 13.2591 6.2331 0.7086 23 1 11.2343 4.9050 0.5799 24 6 3.6406 0.7476 -1.6946 25 6 2.7800 1.0018 -2.7460 26 6 2.9665 0.3684 -3.9605 27 6 4.0087 -0.5254 -4.1210 28 6 4.8662 -0.7835 -3.0679 29 6 4.6819 -0.1473 -1.8546 30 1 -0.3633 0.5932 -0.8392 31 1 -0.3633 -1.0233 -0.0942 32 1 -0.3634 0.4302 0.9332 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 2.1622 3.0487 1.2747 36 1 0.7231 2.0312 1.5213 37 1 2.3170 1.4677 2.0780 38 1 5.8425 2.5023 -0.2943 39 1 5.1435 5.1801 0.2687 40 1 5.2822 4.9957 -1.4962 41 1 7.4754 4.3915 -2.3934 42 1 7.2277 6.6302 -1.3382 43 1 7.0962 6.6599 0.4366 44 1 9.5396 5.4231 -0.2554 45 1 12.5686 8.7637 -0.0848 46 1 1.9638 1.6978 -2.6197 47 1 2.2964 0.5699 -4.7832 48 1 4.1528 -1.0222 -5.0690 49 1 5.6802 -1.4821 -3.1931 50 1 5.3521 -0.3487 -1.0320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272558864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:06 Heat of formation + Delta-G solvation = -34.949415 kcal Electronic energy + Delta-G solvation = -29259.341175 eV Core-core repulsion = 25287.205016 eV Total energy + Delta-G solvation = -3972.136160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.77856 -39.10755 -37.95746 -37.14679 -34.51147 -34.12943 -32.70938 -31.47812 -31.15757 -30.79092 -29.58717 -27.49519 -26.06745 -24.80076 -22.90718 -22.46155 -22.15425 -21.54731 -21.16081 -20.07849 -17.80419 -17.59771 -17.21116 -16.80910 -16.19980 -15.90291 -15.83330 -15.31602 -15.04787 -14.87673 -14.60207 -14.48808 -14.14291 -13.82993 -13.66069 -13.54261 -13.33847 -13.18010 -13.08768 -12.80284 -12.53099 -12.44701 -12.34108 -12.13668 -12.01553 -11.74494 -11.41239 -11.30874 -11.30057 -11.10603 -10.88064 -10.82653 -10.21467 -10.14631 -9.77153 -9.57270 -9.18762 -9.16346 -8.95658 -8.93993 -8.67981 -7.27320 -5.79015 -3.15251 0.97218 1.14802 2.50060 2.82477 3.38315 3.40872 3.43089 3.45537 3.75466 4.29294 4.49419 4.53048 4.58261 4.60047 4.68866 4.73078 4.74469 4.80678 4.88310 4.95931 5.12503 5.13658 5.20707 5.20975 5.26503 5.35061 5.43721 5.49772 5.49930 5.62328 5.64181 5.67470 5.74077 5.77748 5.79764 5.84237 5.92751 6.15915 6.25233 6.26205 6.29591 6.40348 6.53699 6.58640 6.68967 6.72367 7.38296 7.76704 7.97080 8.11437 8.39541 9.19055 9.90943 10.10721 11.39027 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.002481 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.691165 B =11281.347781 C =12281.561478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.515 5.515 4 C 0.019 3.981 5 C 0.110 3.890 6 H 0.067 0.933 7 C 0.521 3.479 8 O -0.518 6.518 9 N -0.721 5.721 10 C 0.092 3.908 11 C 0.086 3.914 12 H 0.103 0.897 13 O -0.556 6.556 14 C 0.131 3.869 15 N -0.749 5.749 16 C -0.248 4.248 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.888 3.112 21 H -0.283 1.283 22 H -0.292 1.292 23 H -0.277 1.277 24 C -0.085 4.085 25 C -0.082 4.082 26 C -0.124 4.124 27 C -0.114 4.114 28 C -0.121 4.121 29 C -0.109 4.109 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.402 0.598 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.377 0.623 42 H 0.032 0.968 43 H 0.037 0.963 44 H 0.366 0.634 45 H 0.260 0.740 46 H 0.133 0.867 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.123 0.877 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.773 -23.777 -2.540 32.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 N -0.239 5.239 4 C -0.129 4.129 5 C -0.001 4.001 6 H 0.084 0.916 7 C 0.305 3.695 8 O -0.393 6.393 9 N -0.373 5.373 10 C -0.032 4.032 11 C 0.026 3.974 12 H 0.121 0.879 13 O -0.361 6.361 14 C 0.003 3.997 15 N -0.396 5.396 16 C -0.378 4.378 17 H 0.107 0.893 18 C -0.191 4.191 19 N -0.581 5.581 20 Si 0.719 3.281 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.086 4.086 25 C -0.100 4.100 26 C -0.142 4.142 27 C -0.132 4.132 28 C -0.139 4.139 29 C -0.128 4.128 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.052 0.948 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.042 0.958 38 H 0.237 0.763 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.224 0.776 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.200 0.800 45 H 0.070 0.930 46 H 0.151 0.849 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.141 0.859 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -22.356 -22.961 -2.514 32.145 hybrid contribution 1.446 -1.370 0.377 2.028 sum -20.910 -24.331 -2.137 32.152 Atomic orbital electron populations 1.21744 0.94465 1.01513 1.02538 1.22188 0.96473 0.88148 1.01182 1.61747 1.14099 1.17449 1.30655 1.22525 1.02340 1.00280 0.87731 1.20444 0.91050 0.93288 0.95362 0.91571 1.20165 0.82430 0.90103 0.76782 1.90711 1.51540 1.49588 1.47448 1.45900 1.07405 1.09692 1.74299 1.22073 0.95799 0.82147 1.03183 1.22432 0.89289 0.95053 0.90652 0.87906 1.86538 1.73398 1.59503 1.16700 1.21165 0.86725 0.92174 0.99670 1.42560 1.00860 1.05613 1.90536 1.19043 0.90628 0.84936 1.43149 0.89256 1.24680 0.96318 0.96296 1.01794 1.69710 1.09230 1.22043 1.57077 0.86489 0.80098 0.83715 0.77846 1.21003 1.21809 1.20307 1.19323 0.96942 0.98104 0.94205 1.21117 0.98650 0.98434 0.91830 1.21210 0.98327 0.97233 0.97456 1.21221 0.95161 0.98019 0.98848 1.21089 0.99538 1.00185 0.93057 1.21030 0.97237 0.96454 0.98065 0.91611 0.92331 0.92789 0.90222 0.94825 0.90211 0.90706 0.95837 0.76315 0.90277 0.90868 0.77591 0.95011 0.94518 0.80030 0.93009 0.84936 0.85938 0.86076 0.85867 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.85 37.16 0.37 -0.63 16 2 C 0.05 0.37 5.37 -3.82 -0.02 0.35 16 3 N -0.51 -4.97 3.81 -237.70 -0.90 -5.87 16 4 C 0.02 0.18 9.03 60.06 0.54 0.72 16 5 C 0.11 1.07 2.08 -70.02 -0.15 0.92 16 6 H 0.07 0.55 7.94 -51.93 -0.41 0.14 16 7 C 0.52 6.32 6.12 -10.99 -0.07 6.25 16 8 O -0.52 -8.04 15.15 5.55 0.08 -7.96 16 9 N -0.72 -7.97 5.50 -60.29 -0.33 -8.31 16 10 C 0.09 1.13 5.31 -4.04 -0.02 1.11 16 11 C 0.09 1.20 3.09 -26.73 -0.08 1.12 16 12 H 0.10 1.45 8.14 -51.93 -0.42 1.02 16 13 O -0.56 -8.01 13.03 -35.23 -0.46 -8.47 16 14 C 0.13 2.39 5.92 -4.04 -0.02 2.37 16 15 N -0.75 -17.67 5.30 -59.91 -0.32 -17.99 16 16 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 17 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 18 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 19 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 20 Si 0.89 22.38 27.74 -169.99 -4.71 17.67 16 21 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 23 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 24 C -0.08 -0.80 3.30 -104.62 -0.35 -1.14 16 25 C -0.08 -0.81 8.50 -39.59 -0.34 -1.14 16 26 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 27 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 28 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 29 C -0.11 -0.91 9.67 -39.59 -0.38 -1.29 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.36 6.98 -51.93 -0.36 0.00 16 33 H 0.08 0.65 5.98 -51.93 -0.31 0.34 16 34 H 0.03 0.25 8.03 -51.93 -0.42 -0.17 16 35 H 0.08 0.91 6.13 -51.93 -0.32 0.59 16 36 H 0.07 0.62 6.81 -51.93 -0.35 0.27 16 37 H 0.02 0.19 8.11 -51.93 -0.42 -0.23 16 38 H 0.40 3.87 8.47 -40.82 -0.35 3.52 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.38 4.57 9.05 45.56 0.41 4.98 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.37 8.61 5.40 -40.82 -0.22 8.39 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.13 1.45 7.90 -52.48 -0.41 1.04 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 49 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 50 H 0.12 0.81 7.99 -52.49 -0.42 0.39 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -34.37 405.90 -9.12 -43.49 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -7.40 Total: 12.57 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -1.96 Total: -2.60 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.78 Total: -60.81 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.37 Total: -16.43 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.37 -9.12 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272558864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.537 kcal (2) G-P(sol) polarization free energy of solvation -34.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds