Wall clock time and date at job start Tue Mar 31 2020 19:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46905 * 109.47145 * 2 1 4 4 C 1.46898 * 111.00245 * 71.77362 * 3 2 1 5 5 C 1.46893 * 110.99765 * 195.73266 * 3 2 1 6 6 H 1.08998 * 109.47473 * 294.66569 * 5 3 2 7 7 C 1.50702 * 109.47322 * 174.66633 * 5 3 2 8 8 O 1.21284 * 119.99456 * 339.99952 * 7 5 3 9 9 N 1.34773 * 120.00417 * 159.99863 * 7 5 3 10 10 C 1.46504 * 120.00149 * 180.02562 * 9 7 5 11 11 C 1.52998 * 109.47178 * 179.97438 * 10 9 7 12 12 H 1.08993 * 109.47457 * 305.00380 * 11 10 9 13 13 O 1.42904 * 109.46856 * 64.99929 * 11 10 9 14 14 C 1.52998 * 109.47150 * 184.99410 * 11 10 9 15 15 N 1.46499 * 109.47197 * 180.02562 * 14 11 10 16 16 C 1.36934 * 120.00140 * 180.02562 * 15 14 11 17 17 H 1.08007 * 120.00040 * 0.02562 * 16 15 14 18 18 C 1.38813 * 120.00258 * 179.97438 * 16 15 14 19 19 N 1.31620 * 119.99968 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99897 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.46907 * 89.99686 * 20 18 16 22 22 H 1.48498 * 109.47166 * 210.00146 * 20 18 16 23 23 H 1.48497 * 109.46938 * 330.00177 * 20 18 16 24 24 C 1.50707 * 109.47723 * 54.66870 * 5 3 2 25 25 C 1.38228 * 119.99725 * 45.82591 * 24 5 3 26 26 C 1.38234 * 119.99989 * 179.81660 * 25 24 5 27 27 C 1.38236 * 120.00019 * 0.39506 * 26 25 24 28 28 C 1.38237 * 119.99556 * 359.86301 * 27 26 25 29 29 C 1.38226 * 120.00261 * 359.95210 * 28 27 26 30 30 H 1.09006 * 109.47034 * 54.74640 * 1 2 3 31 31 H 1.08995 * 109.47027 * 174.74282 * 1 2 3 32 32 H 1.08994 * 109.47607 * 294.75049 * 1 2 3 33 33 H 1.08990 * 109.47283 * 239.99222 * 2 1 3 34 34 H 1.09003 * 109.46792 * 119.99155 * 2 1 3 35 35 H 1.08996 * 109.46573 * 180.02562 * 4 3 2 36 36 H 1.08991 * 109.47138 * 300.00240 * 4 3 2 37 37 H 1.09000 * 109.46851 * 60.00481 * 4 3 2 38 38 H 0.96996 * 119.99961 * 0.02562 * 9 7 5 39 39 H 1.09000 * 109.46947 * 59.99968 * 10 9 7 40 40 H 1.08998 * 109.46535 * 299.99905 * 10 9 7 41 41 H 0.96701 * 113.99903 * 59.99990 * 13 11 10 42 42 H 1.08993 * 109.47733 * 300.00802 * 14 11 10 43 43 H 1.09005 * 109.46654 * 60.00471 * 14 11 10 44 44 H 0.97002 * 119.99929 * 0.02562 * 15 14 11 45 45 H 0.97000 * 119.99390 * 179.97438 * 19 18 16 46 46 H 1.08007 * 120.00313 * 0.02562 * 25 24 5 47 47 H 1.08002 * 120.00492 * 180.23807 * 26 25 24 48 48 H 1.07997 * 120.00010 * 179.83385 * 27 26 25 49 49 H 1.08000 * 119.99775 * 179.97438 * 28 27 26 50 50 H 1.08000 * 120.00287 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7908 2.0244 1.3026 5 6 3.4397 1.4413 -0.3718 6 1 4.0357 0.9440 0.3934 7 6 3.8718 2.8803 -0.4887 8 8 3.0427 3.7515 -0.6453 9 7 5.1794 3.1991 -0.4192 10 6 5.5994 4.5981 -0.5322 11 6 7.1229 4.6838 -0.4207 12 1 7.4470 4.2061 0.5037 13 8 7.7202 4.0185 -1.5355 14 6 7.5519 6.1524 -0.4137 15 7 9.0107 6.2345 -0.3076 16 6 9.6276 7.4568 -0.2820 17 1 9.0387 8.3603 -0.3397 18 6 11.0099 7.5346 -0.1809 19 7 11.6028 8.7094 -0.1559 20 14 12.0285 5.9720 -0.0804 21 1 12.4017 5.5355 -1.4499 22 1 13.2591 6.2331 0.7086 23 1 11.2343 4.9050 0.5799 24 6 3.6406 0.7476 -1.6946 25 6 2.7800 1.0018 -2.7460 26 6 2.9665 0.3684 -3.9605 27 6 4.0087 -0.5254 -4.1210 28 6 4.8662 -0.7835 -3.0679 29 6 4.6819 -0.1473 -1.8546 30 1 -0.3633 0.5932 -0.8392 31 1 -0.3633 -1.0233 -0.0942 32 1 -0.3634 0.4302 0.9332 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 2.1622 3.0487 1.2747 36 1 0.7231 2.0312 1.5213 37 1 2.3170 1.4677 2.0780 38 1 5.8425 2.5023 -0.2943 39 1 5.1435 5.1801 0.2687 40 1 5.2822 4.9957 -1.4962 41 1 7.4754 4.3915 -2.3934 42 1 7.2277 6.6302 -1.3382 43 1 7.0962 6.6599 0.4366 44 1 9.5396 5.4231 -0.2554 45 1 12.5686 8.7637 -0.0848 46 1 1.9638 1.6978 -2.6197 47 1 2.2964 0.5699 -4.7832 48 1 4.1528 -1.0222 -5.0690 49 1 5.6802 -1.4821 -3.1931 50 1 5.3521 -0.3487 -1.0320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272558864.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:05 Heat of formation + Delta-G solvation = -61.579094 kcal Electronic energy + Delta-G solvation = -29260.495925 eV Core-core repulsion = 25287.205016 eV Total energy + Delta-G solvation = -3973.290909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59299 -39.93443 -39.03518 -37.96921 -36.19225 -35.31884 -33.53815 -33.32513 -31.77235 -31.41639 -30.94237 -28.37319 -27.23764 -25.84643 -24.01207 -23.53117 -22.92358 -22.84863 -22.01274 -20.94979 -19.79659 -18.48921 -17.98923 -17.76028 -17.24805 -16.86464 -16.61943 -16.53233 -16.23101 -15.75798 -15.54881 -15.41966 -15.36707 -15.18754 -14.88679 -14.37597 -14.24647 -14.21519 -14.03438 -13.96456 -13.65511 -13.43535 -13.29747 -13.16119 -12.98771 -12.81851 -12.73286 -12.46742 -12.24629 -12.03553 -11.91021 -11.89566 -11.84254 -11.71968 -11.21730 -11.03207 -10.87070 -10.14831 -9.80730 -9.62890 -9.35614 -9.32992 -8.04396 -5.38389 0.33677 0.51937 1.39062 1.42460 1.49780 1.58049 1.93935 2.47952 2.75492 3.03391 3.26148 3.34150 3.52406 3.59544 3.78509 3.89040 3.97895 4.07341 4.08313 4.17096 4.19676 4.21724 4.31553 4.32184 4.49838 4.54635 4.58244 4.61932 4.66111 4.70529 4.73212 4.90624 4.92202 5.00403 5.03375 5.08863 5.15923 5.18136 5.34319 5.35590 5.55562 5.61144 5.64625 5.72636 5.90172 6.05202 6.10257 6.19033 6.50684 6.72985 7.06579 7.20211 7.81561 8.01391 9.16884 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015935 B = 0.002481 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.691165 B =11281.347781 C =12281.561478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 N -0.530 5.530 4 C 0.023 3.977 5 C 0.116 3.884 6 H 0.085 0.915 7 C 0.520 3.480 8 O -0.558 6.558 9 N -0.711 5.711 10 C 0.103 3.897 11 C 0.107 3.893 12 H 0.111 0.889 13 O -0.562 6.562 14 C 0.124 3.876 15 N -0.752 5.752 16 C -0.238 4.238 17 H 0.056 0.944 18 C -0.065 4.065 19 N -0.983 5.983 20 Si 0.961 3.039 21 H -0.279 1.279 22 H -0.296 1.296 23 H -0.252 1.252 24 C -0.092 4.092 25 C -0.098 4.098 26 C -0.133 4.133 27 C -0.118 4.118 28 C -0.124 4.124 29 C -0.112 4.112 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.043 0.957 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.036 0.964 38 H 0.413 0.587 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.387 0.613 42 H 0.033 0.967 43 H 0.037 0.963 44 H 0.370 0.630 45 H 0.259 0.741 46 H 0.112 0.888 47 H 0.133 0.867 48 H 0.141 0.859 49 H 0.144 0.856 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.674 -27.331 -2.524 34.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 N -0.256 5.256 4 C -0.125 4.125 5 C 0.005 3.995 6 H 0.103 0.897 7 C 0.306 3.694 8 O -0.435 6.435 9 N -0.363 5.363 10 C -0.022 4.022 11 C 0.048 3.952 12 H 0.129 0.871 13 O -0.369 6.369 14 C -0.003 4.003 15 N -0.398 5.398 16 C -0.369 4.369 17 H 0.074 0.926 18 C -0.256 4.256 19 N -0.633 5.633 20 Si 0.788 3.212 21 H -0.205 1.205 22 H -0.222 1.222 23 H -0.176 1.176 24 C -0.093 4.093 25 C -0.116 4.116 26 C -0.150 4.150 27 C -0.136 4.136 28 C -0.142 4.142 29 C -0.130 4.130 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.249 0.751 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.236 0.764 42 H 0.051 0.949 43 H 0.055 0.945 44 H 0.203 0.797 45 H 0.067 0.933 46 H 0.130 0.870 47 H 0.151 0.849 48 H 0.159 0.841 49 H 0.162 0.838 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -22.295 -26.566 -2.504 34.772 hybrid contribution 1.305 -0.205 0.315 1.358 sum -20.990 -26.770 -2.189 34.088 Atomic orbital electron populations 1.21722 0.93925 1.02209 1.02066 1.22186 0.96870 0.87115 1.01396 1.61719 1.14331 1.18644 1.30858 1.22454 1.02841 0.99083 0.88129 1.20406 0.91397 0.91484 0.96251 0.89703 1.20642 0.82125 0.90928 0.75687 1.90694 1.52577 1.50954 1.49276 1.45777 1.07490 1.09332 1.73746 1.21823 0.94439 0.83012 1.02892 1.22129 0.90059 0.91967 0.91094 0.87127 1.86517 1.73613 1.59427 1.17304 1.21382 0.83806 0.95565 0.99562 1.42527 1.02988 1.03879 1.90416 1.19035 0.90683 0.85799 1.41383 0.92601 1.25546 0.97759 0.99862 1.02445 1.69892 1.09433 1.24787 1.59237 0.85327 0.78051 0.79855 0.77993 1.20517 1.22243 1.17639 1.19327 0.97496 0.98738 0.93750 1.21051 0.98739 0.98929 0.92907 1.21393 0.98975 0.97355 0.97323 1.21511 0.94617 0.97566 0.99868 1.21412 0.99890 1.00158 0.92759 1.21265 0.96937 0.95888 0.98939 0.92893 0.90865 0.92593 0.90550 0.93856 0.92603 0.90071 0.94522 0.75096 0.90588 0.91321 0.76406 0.94874 0.94454 0.79651 0.93263 0.86970 0.84909 0.84096 0.83833 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.85 71.98 0.71 -1.08 16 2 C 0.05 0.73 5.37 86.30 0.46 1.20 16 3 N -0.53 -9.83 3.81 -905.95 -3.45 -13.28 16 4 C 0.02 0.41 9.03 127.69 1.15 1.56 16 5 C 0.12 2.10 2.08 43.43 0.09 2.19 16 6 H 0.09 1.19 7.94 -2.39 -0.02 1.17 16 7 C 0.52 12.20 6.12 87.66 0.54 12.73 16 8 O -0.56 -17.48 15.15 -3.04 -0.05 -17.52 16 9 N -0.71 -14.48 5.50 -463.06 -2.55 -17.03 16 10 C 0.10 2.39 5.31 86.38 0.46 2.85 16 11 C 0.11 2.78 3.09 30.59 0.09 2.87 16 12 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 13 O -0.56 -14.60 13.03 -148.98 -1.94 -16.54 16 14 C 0.12 4.38 5.92 86.38 0.51 4.89 16 15 N -0.75 -34.48 5.30 -343.46 -1.82 -36.30 16 16 C -0.24 -13.61 10.47 84.03 0.88 -12.73 16 17 H 0.06 3.50 8.06 -2.91 -0.02 3.47 16 18 C -0.06 -3.82 5.50 84.86 0.47 -3.36 16 19 N -0.98 -63.29 13.97 21.65 0.30 -62.99 16 20 Si 0.96 45.74 27.74 68.60 1.90 47.64 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 22 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 23 H -0.25 -10.82 6.52 99.48 0.65 -10.17 16 24 C -0.09 -1.59 3.30 -19.87 -0.07 -1.66 16 25 C -0.10 -1.88 8.50 22.27 0.19 -1.70 16 26 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 27 C -0.12 -1.58 10.05 22.27 0.22 -1.36 16 28 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 29 C -0.11 -1.55 9.67 22.27 0.22 -1.34 16 30 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.68 6.98 -2.39 -0.02 0.66 16 33 H 0.08 1.15 5.98 -2.39 -0.01 1.14 16 34 H 0.04 0.54 8.03 -2.39 -0.02 0.52 16 35 H 0.06 1.28 6.13 -2.39 -0.01 1.27 16 36 H 0.08 1.31 6.81 -2.39 -0.02 1.29 16 37 H 0.04 0.54 8.11 -2.39 -0.02 0.52 16 38 H 0.41 6.80 8.47 -92.71 -0.79 6.01 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.39 8.44 9.05 -74.06 -0.67 7.77 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.37 16.40 5.40 -92.71 -0.50 15.90 16 45 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.11 2.57 7.90 -2.91 -0.02 2.55 16 47 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 49 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 50 H 0.14 1.36 7.99 -2.91 -0.02 1.33 16 Total: -1.00 -74.93 405.90 -2.28 -77.21 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -1.06 Total: 37.01 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 6.37 Total: 1.80 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -7.51 Total: -129.60 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -1.99 Total: -34.06 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.90 Total: 47.64 kcal Total: -74.93 -2.28 -77.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272558864.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.633 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds