Wall clock time and date at job start Tue Mar 31 2020 19:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46892 * 109.47045 * 2 1 4 4 C 1.46900 * 111.00172 * 201.05391 * 3 2 1 5 5 C 1.46900 * 111.00192 * 77.10236 * 3 2 1 6 6 H 1.09002 * 109.47097 * 50.09827 * 5 3 2 7 7 C 1.50695 * 109.47587 * 170.10679 * 5 3 2 8 8 O 1.21288 * 120.00107 * 30.50930 * 7 5 3 9 9 N 1.34776 * 120.00323 * 210.50889 * 7 5 3 10 10 C 1.46496 * 120.00175 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47001 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.46807 * 304.99498 * 11 10 9 13 13 O 1.42892 * 109.47520 * 64.99860 * 11 10 9 14 14 C 1.53002 * 109.47104 * 185.00006 * 11 10 9 15 15 N 1.46503 * 109.46999 * 179.97438 * 14 11 10 16 16 C 1.36940 * 119.99782 * 180.02562 * 15 14 11 17 17 H 1.08006 * 119.99702 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99966 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00215 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00103 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47412 * 89.99773 * 20 18 16 22 22 H 1.48500 * 109.47377 * 209.99799 * 20 18 16 23 23 H 1.48499 * 109.46962 * 329.99876 * 20 18 16 24 24 C 1.50700 * 109.46880 * 290.10704 * 5 3 2 25 25 C 1.38231 * 120.00329 * 131.55703 * 24 5 3 26 26 C 1.38233 * 120.00231 * 179.97438 * 25 24 5 27 27 C 1.38237 * 120.00141 * 359.95912 * 26 25 24 28 28 C 1.38230 * 119.99857 * 359.97438 * 27 26 25 29 29 C 1.38237 * 119.99914 * 0.07907 * 28 27 26 30 30 H 1.09001 * 109.47002 * 50.17829 * 1 2 3 31 31 H 1.08992 * 109.47074 * 170.18187 * 1 2 3 32 32 H 1.09002 * 109.46681 * 290.18222 * 1 2 3 33 33 H 1.09002 * 109.46455 * 240.00168 * 2 1 3 34 34 H 1.08997 * 109.47110 * 120.00653 * 2 1 3 35 35 H 1.09007 * 109.47230 * 289.55622 * 4 3 2 36 36 H 1.09003 * 109.46920 * 49.55203 * 4 3 2 37 37 H 1.08997 * 109.47680 * 169.55402 * 4 3 2 38 38 H 0.97002 * 119.99690 * 0.02562 * 9 7 5 39 39 H 1.09005 * 109.47338 * 299.99751 * 10 9 7 40 40 H 1.08997 * 109.47444 * 60.00548 * 10 9 7 41 41 H 0.96706 * 114.00259 * 59.99837 * 13 11 10 42 42 H 1.09004 * 109.47079 * 299.99957 * 14 11 10 43 43 H 1.09005 * 109.47221 * 59.99795 * 14 11 10 44 44 H 0.96989 * 120.00186 * 0.02562 * 15 14 11 45 45 H 0.96997 * 120.00306 * 179.97438 * 19 18 16 46 46 H 1.08008 * 120.00062 * 359.97438 * 25 24 5 47 47 H 1.08004 * 119.99676 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.99862 * 179.72361 * 27 26 25 49 49 H 1.07998 * 120.00205 * 179.97438 * 28 27 26 50 50 H 1.08004 * 119.99590 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4018 1.4547 -0.4927 5 6 1.9066 1.9833 1.3368 6 1 2.3483 1.3125 2.0737 7 6 2.6333 3.3033 1.3596 8 8 2.7066 3.9727 0.3508 9 7 3.2018 3.7400 2.5008 10 6 3.9087 5.0229 2.5228 11 6 4.4560 5.2797 3.9283 12 1 3.6427 5.2192 4.6515 13 8 5.4456 4.2974 4.2410 14 6 5.0853 6.6732 3.9839 15 7 5.6089 6.9192 5.3299 16 6 6.2206 8.1096 5.6196 17 1 6.3175 8.8669 4.8556 18 6 6.7171 8.3426 6.8947 19 7 7.3055 9.4865 7.1731 20 14 6.5514 7.0319 8.2154 21 1 7.7414 6.1440 8.1837 22 1 6.4535 7.6810 9.5474 23 1 5.3277 6.2288 7.9649 24 6 0.4529 2.2046 1.6667 25 6 -0.0502 1.7899 2.8857 26 6 -1.3835 1.9933 3.1885 27 6 -2.2137 2.6122 2.2726 28 6 -1.7104 3.0281 1.0542 29 6 -0.3773 2.8236 0.7510 30 1 -0.3633 0.6581 -0.7893 31 1 -0.3633 -1.0125 -0.1752 32 1 -0.3633 0.3546 0.9646 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 4.0732 1.0148 0.2450 36 1 3.4816 0.9044 -1.4302 37 1 3.6765 2.4964 -0.6583 38 1 3.1434 3.2045 3.3075 39 1 4.7341 4.9952 1.8113 40 1 3.2199 5.8222 2.2492 41 1 6.2008 4.2937 3.6370 42 1 5.8986 6.7337 3.2607 43 1 4.3305 7.4225 3.7454 44 1 5.5222 6.2390 6.0158 45 1 7.6521 9.6494 8.0642 46 1 0.5986 1.3070 3.6015 47 1 -1.7766 1.6689 4.1407 48 1 -3.2564 2.7670 2.5075 49 1 -2.3591 3.5112 0.3385 50 1 0.0158 3.1483 -0.2011 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272558867.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:11 Heat of formation + Delta-G solvation = -29.691880 kcal Electronic energy + Delta-G solvation = -29423.481802 eV Core-core repulsion = 25451.573626 eV Total energy + Delta-G solvation = -3971.908176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.91075 -39.18375 -37.96963 -37.06987 -34.55478 -34.16159 -32.37101 -31.49274 -31.29419 -31.09202 -29.60483 -27.56232 -25.73802 -24.60297 -22.98830 -22.49411 -22.14552 -21.63614 -21.37169 -20.09141 -17.84479 -17.64488 -17.31329 -16.69152 -16.17250 -15.96509 -15.74961 -15.27722 -14.99298 -14.74663 -14.67126 -14.43520 -14.31413 -13.76362 -13.64809 -13.55587 -13.44728 -13.22970 -13.11500 -12.86295 -12.58359 -12.44854 -12.33562 -12.06103 -11.88996 -11.65642 -11.40170 -11.32487 -11.26062 -11.11426 -10.88932 -10.84616 -10.21938 -10.13322 -9.78546 -9.58232 -9.20279 -9.13954 -8.95071 -8.85923 -8.69485 -7.28191 -5.79636 -3.16032 1.00513 1.18570 2.42417 2.82044 3.37787 3.41221 3.42469 3.45050 3.75747 4.33772 4.46902 4.53690 4.56650 4.58213 4.65817 4.69588 4.77040 4.83553 4.92506 4.94362 5.09893 5.13566 5.22937 5.25950 5.29364 5.38323 5.41924 5.49020 5.52801 5.63432 5.66183 5.71934 5.76693 5.80330 5.82813 5.83454 6.01564 6.18843 6.26034 6.29606 6.29871 6.39260 6.51919 6.58235 6.70271 6.74561 7.33021 7.73165 7.96214 8.05226 8.38843 9.18295 9.90163 10.09834 11.38401 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.002463 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.990613 B =11364.411044 C =12095.786072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.053 3.947 3 N -0.516 5.516 4 C 0.010 3.990 5 C 0.111 3.889 6 H 0.067 0.933 7 C 0.520 3.480 8 O -0.520 6.520 9 N -0.719 5.719 10 C 0.092 3.908 11 C 0.085 3.915 12 H 0.104 0.896 13 O -0.557 6.557 14 C 0.131 3.869 15 N -0.749 5.749 16 C -0.248 4.248 17 H 0.090 0.910 18 C 0.005 3.995 19 N -0.933 5.933 20 Si 0.888 3.112 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C -0.074 4.074 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.116 4.116 28 C -0.125 4.125 29 C -0.076 4.076 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.036 0.964 35 H 0.023 0.977 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.403 0.597 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.376 0.624 42 H 0.032 0.968 43 H 0.037 0.963 44 H 0.366 0.634 45 H 0.260 0.740 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.122 0.878 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.328 -22.550 -14.317 31.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.075 4.075 3 N -0.241 5.241 4 C -0.138 4.138 5 C -0.001 4.001 6 H 0.084 0.916 7 C 0.304 3.696 8 O -0.395 6.395 9 N -0.371 5.371 10 C -0.033 4.033 11 C 0.025 3.975 12 H 0.122 0.878 13 O -0.362 6.362 14 C 0.003 3.997 15 N -0.396 5.396 16 C -0.378 4.378 17 H 0.108 0.892 18 C -0.191 4.191 19 N -0.580 5.580 20 Si 0.718 3.282 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.075 4.075 25 C -0.133 4.133 26 C -0.141 4.141 27 C -0.134 4.134 28 C -0.143 4.143 29 C -0.094 4.094 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.238 0.762 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.224 0.776 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.200 0.800 45 H 0.070 0.930 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.140 0.860 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.856 -21.674 -14.925 31.802 hybrid contribution 0.810 -1.376 1.563 2.235 sum -17.046 -23.050 -13.362 31.630 Atomic orbital electron populations 1.22113 0.94597 1.01267 1.03388 1.22165 0.96734 0.87700 1.00876 1.61851 1.22487 1.18324 1.21430 1.22698 0.87020 1.04598 0.99448 1.20517 0.93353 0.94164 0.92026 0.91577 1.20186 0.78629 0.87293 0.83457 1.90689 1.58861 1.57010 1.32964 1.45939 1.55734 1.22857 1.12599 1.22088 0.97218 0.85456 0.98494 1.22445 0.91341 0.89527 0.94149 0.87816 1.86540 1.34195 1.57332 1.58147 1.21166 0.96681 0.92610 0.89263 1.42560 1.71341 1.18088 1.07585 1.19042 1.29395 0.92332 0.97027 0.89250 1.24675 1.00258 0.96847 0.97273 1.69704 1.43895 1.23371 1.21077 0.86492 0.77970 0.81651 0.82050 1.21014 1.21791 1.20296 1.19252 0.93198 1.00305 0.94784 1.21012 0.95906 1.00397 0.96000 1.21064 0.93584 0.99843 0.99583 1.21196 0.99792 0.98287 0.94113 1.21200 0.95635 1.00390 0.97108 1.21093 0.92886 0.95971 0.99432 0.91648 0.92921 0.91560 0.90648 0.94618 0.95879 0.91091 0.88969 0.76238 0.90820 0.90180 0.77633 0.95015 0.94477 0.80030 0.92993 0.86150 0.85978 0.86168 0.86009 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.18 8.53 37.16 0.32 -0.87 16 2 C 0.05 0.41 5.71 -3.83 -0.02 0.39 16 3 N -0.52 -4.93 4.06 -237.69 -0.96 -5.90 16 4 C 0.01 0.09 8.86 60.06 0.53 0.63 16 5 C 0.11 1.07 2.09 -70.02 -0.15 0.93 16 6 H 0.07 0.55 7.63 -51.93 -0.40 0.15 16 7 C 0.52 6.17 5.84 -10.99 -0.06 6.11 16 8 O -0.52 -7.82 14.65 5.55 0.08 -7.73 16 9 N -0.72 -7.80 5.50 -60.29 -0.33 -8.13 16 10 C 0.09 1.11 5.31 -4.04 -0.02 1.08 16 11 C 0.09 1.18 3.09 -26.73 -0.08 1.10 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.04 16 13 O -0.56 -7.80 13.03 -35.23 -0.46 -8.26 16 14 C 0.13 2.38 5.92 -4.04 -0.02 2.35 16 15 N -0.75 -17.62 5.30 -59.90 -0.32 -17.94 16 16 C -0.25 -7.03 10.47 -15.06 -0.16 -7.19 16 17 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 18 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 19 N -0.93 -29.38 13.97 55.49 0.78 -28.60 16 20 Si 0.89 22.34 27.74 -169.99 -4.71 17.62 16 21 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 24 C -0.07 -0.70 2.56 -104.62 -0.27 -0.97 16 25 C -0.11 -0.95 8.81 -39.59 -0.35 -1.30 16 26 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 27 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 28 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 29 C -0.08 -0.76 7.30 -39.58 -0.29 -1.04 16 30 H 0.06 0.55 7.64 -51.93 -0.40 0.15 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.55 4.74 -51.93 -0.25 0.30 16 33 H 0.08 0.51 7.70 -51.93 -0.40 0.11 16 34 H 0.04 0.26 7.79 -51.93 -0.40 -0.14 16 35 H 0.02 0.20 8.12 -51.92 -0.42 -0.22 16 36 H 0.07 0.57 7.81 -51.93 -0.41 0.16 16 37 H 0.09 1.09 5.72 -51.93 -0.30 0.79 16 38 H 0.40 3.78 8.47 -40.82 -0.35 3.43 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.38 4.33 9.05 45.56 0.41 4.74 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.37 8.58 5.40 -40.82 -0.22 8.36 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 46 H 0.12 0.80 7.98 -52.48 -0.42 0.38 16 47 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 49 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 50 H 0.13 1.50 7.98 -52.48 -0.42 1.08 16 LS Contribution 400.53 15.07 6.04 6.04 Total: -1.00 -34.07 400.53 -9.11 -43.18 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -7.36 Total: 12.61 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.86 Total: -2.89 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.84 Total: -60.56 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.38 Total: -16.00 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.07 -9.11 -43.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272558867.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.489 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds