Wall clock time and date at job start Tue Mar 31 2020 19:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47744 * 2 1 4 4 C 1.36936 * 120.00118 * 275.24305 * 3 2 1 5 5 H 1.08006 * 119.99923 * 37.68752 * 4 3 2 6 6 C 1.38806 * 119.99784 * 217.69212 * 4 3 2 7 7 N 1.31613 * 120.00354 * 21.67720 * 6 4 3 8 8 Si 1.86802 * 119.99764 * 201.67772 * 6 4 3 9 9 H 1.48506 * 109.47260 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47241 * 120.00005 * 8 6 4 11 11 H 1.48501 * 109.47344 * 240.00019 * 8 6 4 12 12 C 1.46501 * 119.99770 * 95.23372 * 3 2 1 13 13 C 1.52997 * 109.47513 * 270.00515 * 12 3 2 14 14 C 1.53029 * 109.46091 * 175.00340 * 13 12 3 15 15 C 1.53192 * 109.31500 * 181.38577 * 14 13 12 16 16 N 1.46924 * 108.77511 * 305.36505 * 15 14 13 17 17 C 1.34781 * 120.62945 * 233.58340 * 16 15 14 18 18 O 1.21278 * 120.00224 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99628 * 180.02562 * 17 16 15 20 20 C 1.50697 * 109.46963 * 180.02562 * 19 17 16 21 21 C 1.41385 * 126.80555 * 124.99769 * 20 19 17 22 22 C 1.35446 * 103.98813 * 180.20552 * 21 20 19 23 23 C 1.50695 * 126.77867 * 179.74655 * 22 21 20 24 24 O 1.34045 * 106.44558 * 359.65112 * 22 21 20 25 25 N 1.20926 * 111.56437 * 0.37879 * 24 22 21 26 26 C 1.46920 * 118.73916 * 53.85714 * 16 15 14 27 27 C 1.53044 * 109.45969 * 295.07308 * 13 12 3 28 28 H 1.09003 * 109.47227 * 300.00278 * 1 2 3 29 29 H 1.09002 * 109.47083 * 59.99501 * 1 2 3 30 30 H 1.08996 * 109.47440 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47227 * 239.99722 * 2 1 3 32 32 H 1.09002 * 109.47083 * 120.00499 * 2 1 3 33 33 H 0.97002 * 120.00301 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46528 * 150.00575 * 12 3 2 35 35 H 1.09001 * 109.47074 * 30.00840 * 12 3 2 36 36 H 1.08994 * 109.45829 * 55.02739 * 13 12 3 37 37 H 1.09004 * 109.50154 * 61.43363 * 14 13 12 38 38 H 1.09001 * 109.52658 * 301.35055 * 14 13 12 39 39 H 1.08995 * 109.59192 * 185.57502 * 15 14 13 40 40 H 1.09000 * 109.70312 * 65.22128 * 15 14 13 41 41 H 1.08998 * 109.47684 * 59.99921 * 19 17 16 42 42 H 1.09002 * 109.47153 * 299.99851 * 19 17 16 43 43 H 1.08001 * 128.00260 * 359.94216 * 21 20 19 44 44 H 1.08997 * 109.47241 * 89.99476 * 23 22 21 45 45 H 1.08998 * 109.47182 * 210.00041 * 23 22 21 46 46 H 1.09004 * 109.47187 * 329.99478 * 23 22 21 47 47 H 1.08999 * 109.58895 * 65.92952 * 26 16 15 48 48 H 1.09002 * 109.59390 * 186.35107 * 26 16 15 49 49 H 1.08999 * 109.49241 * 298.56447 * 27 13 12 50 50 H 1.09004 * 109.49895 * 58.62841 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1446 2.0628 -1.1809 5 1 1.4118 1.9285 -1.9629 6 6 3.2142 2.9264 -1.3729 7 7 4.3072 2.7906 -0.6525 8 14 3.1023 4.2814 -2.6540 9 1 1.7787 4.2206 -3.3245 10 1 3.2629 5.6017 -1.9934 11 1 4.1766 4.0988 -3.6628 12 6 2.3718 2.0331 1.2635 13 6 1.1406 2.7390 1.8350 14 6 1.4762 3.3136 3.2131 15 6 0.2315 3.9894 3.7971 16 7 -0.2636 4.9820 2.8336 17 6 -0.4680 6.2604 3.2086 18 8 -0.2433 6.6007 4.3507 19 6 -0.9768 7.2667 2.2087 20 6 -1.1176 8.6106 2.8758 21 6 -0.5351 9.8291 2.4575 22 6 -0.9549 10.7267 3.3809 23 6 -0.6246 12.1963 3.4260 24 8 -1.7240 10.0501 4.2456 25 7 -1.8000 8.8797 3.9512 26 6 -0.5376 4.5533 1.4553 27 6 0.7209 3.8724 0.8962 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.0546 3.3944 -0.7864 34 1 3.1605 2.7645 1.0867 35 1 2.7232 1.2840 1.9730 36 1 0.3231 2.0241 1.9289 37 1 2.2767 4.0471 3.1163 38 1 1.7976 2.5093 3.8748 39 1 0.4900 4.4855 4.7325 40 1 -0.5403 3.2420 3.9809 41 1 -1.9471 6.9448 1.8308 42 1 -0.2721 7.3445 1.3808 43 1 0.1012 10.0029 1.6023 44 1 -1.3725 12.7542 2.8626 45 1 -0.6214 12.5364 4.4616 46 1 0.3591 12.3613 2.9864 47 1 -1.3699 3.8495 1.4502 48 1 -0.7867 5.4214 0.8451 49 1 1.5286 4.6005 0.8212 50 1 0.5051 3.4655 -0.0918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274945228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:25 Heat of formation + Delta-G solvation = 35.756275 kcal Electronic energy + Delta-G solvation = -29999.314249 eV Core-core repulsion = 26030.244118 eV Total energy + Delta-G solvation = -3969.070131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.97691 -40.01624 -37.65031 -35.71265 -34.73275 -33.53382 -32.78960 -31.88771 -30.92490 -29.41044 -28.79422 -27.95628 -26.54055 -24.25459 -23.30723 -22.80672 -22.47239 -21.00039 -20.19579 -19.61157 -18.50631 -17.77934 -17.35916 -16.81827 -16.60847 -15.72872 -15.37180 -14.92335 -14.64445 -14.13483 -13.99257 -13.92618 -13.69841 -13.52999 -13.49983 -13.27015 -13.16885 -12.87343 -12.84714 -12.55018 -12.34655 -12.23735 -12.09104 -11.67793 -11.35944 -11.16724 -11.15752 -10.89805 -10.80331 -10.58506 -10.43762 -10.28612 -10.24134 -10.08361 -9.93100 -9.62912 -9.51548 -9.41942 -9.38534 -8.47247 -8.39665 -6.55819 -5.80430 -3.38360 1.40867 2.12024 2.73255 3.01220 3.17565 3.28356 3.38982 3.39525 4.01872 4.28005 4.43184 4.64861 4.84865 4.98055 5.03320 5.08884 5.12274 5.19398 5.24126 5.33571 5.36043 5.43131 5.50564 5.52273 5.54464 5.68939 5.73635 5.75470 5.92436 5.94791 6.01034 6.08464 6.27701 6.32109 6.37609 6.39855 6.50223 6.62903 6.69721 6.84635 6.90091 6.95034 6.99409 7.14124 7.23832 7.56100 7.71160 7.79818 8.25642 8.28759 8.50301 9.18445 9.81227 10.41109 11.18312 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.003105 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.962157 B = 9014.637334 C =10270.428516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.253 4.253 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.884 5.884 8 Si 0.885 3.115 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.153 3.847 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.116 3.884 16 N -0.605 5.605 17 C 0.517 3.483 18 O -0.538 6.538 19 C -0.063 4.063 20 C 0.031 3.969 21 C -0.228 4.228 22 C -0.041 4.041 23 C -0.072 4.072 24 O 0.102 5.898 25 N -0.338 5.338 26 C 0.100 3.900 27 C -0.116 4.116 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.253 0.747 34 H 0.092 0.908 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.171 0.829 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.069 11.705 5.234 16.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.383 4.383 5 H 0.076 0.924 6 C -0.185 4.185 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.217 1.217 12 C 0.026 3.974 13 C -0.122 4.122 14 C -0.167 4.167 15 C -0.006 4.006 16 N -0.338 5.338 17 C 0.303 3.697 18 O -0.415 6.415 19 C -0.104 4.104 20 C -0.128 4.128 21 C -0.249 4.249 22 C -0.104 4.104 23 C -0.130 4.130 24 O 0.032 5.968 25 N -0.040 5.040 26 C -0.022 4.022 27 C -0.153 4.153 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.129 0.871 42 H 0.135 0.865 43 H 0.189 0.811 44 H 0.105 0.895 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.085 0.915 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.524 11.195 6.650 16.742 hybrid contribution 0.564 0.890 -1.450 1.793 sum -9.960 12.085 5.200 16.501 Atomic orbital electron populations 1.22366 1.00187 0.98815 1.01084 1.20827 0.91645 0.87564 0.98554 1.43768 1.76053 1.08098 1.02564 1.18925 1.04351 1.20946 0.94086 0.92396 1.25129 0.94258 1.01359 0.97739 1.70016 1.03073 1.37179 1.42374 0.86517 0.77811 0.82690 0.81574 1.19953 1.21422 1.21722 1.20938 0.94576 0.96290 0.85573 1.21799 1.01225 0.96706 0.92475 1.21946 0.96802 0.99869 0.98037 1.21593 0.96218 0.90408 0.92409 1.48138 1.64954 1.08487 1.12254 1.20206 0.78118 0.82639 0.88709 1.90705 1.51783 1.78822 1.20220 1.20054 1.04387 0.88066 0.97880 1.22811 0.98946 0.96717 0.94328 1.22384 1.07164 0.91478 1.03895 1.24456 0.96840 0.97575 0.91541 1.20305 1.02961 0.85271 1.04420 1.84847 1.52908 1.14762 1.44235 1.73870 1.20682 0.94310 1.15097 1.22123 0.99608 0.99606 0.80865 1.21967 0.95009 0.97417 1.00952 0.93749 0.93297 0.94787 0.94061 0.95028 0.93685 0.88999 0.96072 0.92594 0.91848 0.91422 0.89782 0.91999 0.87072 0.86488 0.81145 0.89545 0.89902 0.89137 0.91547 0.90604 0.92330 0.88227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 10.21 37.15 0.38 -2.43 16 2 C 0.14 2.82 6.44 -4.04 -0.03 2.79 16 3 N -0.58 -13.31 2.31 -173.23 -0.40 -13.70 16 4 C -0.25 -6.30 7.35 -15.06 -0.11 -6.41 16 5 H 0.06 1.46 7.92 -52.48 -0.42 1.05 16 6 C 0.02 0.40 4.94 -17.44 -0.09 0.32 16 7 N -0.88 -24.19 11.50 55.49 0.64 -23.55 16 8 Si 0.88 20.12 29.61 -169.99 -5.03 15.09 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.15 3.29 4.84 -4.04 -0.02 3.27 16 13 C -0.10 -1.78 2.35 -90.58 -0.21 -1.99 16 14 C -0.13 -2.03 5.36 -26.62 -0.14 -2.18 16 15 C 0.12 1.74 6.43 -3.71 -0.02 1.72 16 16 N -0.60 -9.11 2.97 -172.51 -0.51 -9.62 16 17 C 0.52 8.29 7.69 -10.98 -0.08 8.21 16 18 O -0.54 -10.61 15.01 5.56 0.08 -10.53 16 19 C -0.06 -0.80 4.64 -29.03 -0.13 -0.93 16 20 C 0.03 0.44 6.10 -82.10 -0.50 -0.06 16 21 C -0.23 -2.54 11.05 -39.38 -0.44 -2.98 16 22 C -0.04 -0.42 7.49 -35.31 -0.26 -0.69 16 23 C -0.07 -0.40 10.45 36.00 0.38 -0.03 16 24 O 0.10 1.37 11.20 17.16 0.19 1.57 16 25 N -0.34 -5.32 11.46 33.42 0.38 -4.94 16 26 C 0.10 1.38 6.37 -3.49 -0.02 1.36 16 27 C -0.12 -2.00 4.97 -26.38 -0.13 -2.13 16 28 H 0.04 0.74 6.47 -51.93 -0.34 0.40 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.03 0.60 7.83 -51.93 -0.41 0.20 16 33 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 34 H 0.09 2.29 5.54 -51.93 -0.29 2.01 16 35 H 0.02 0.45 7.86 -51.93 -0.41 0.04 16 36 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.34 7.01 -51.93 -0.36 0.98 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.11 1.17 7.93 -51.93 -0.41 0.75 16 42 H 0.12 1.24 7.70 -51.93 -0.40 0.84 16 43 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.08 0.87 5.93 -51.93 -0.31 0.57 16 49 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 50 H 0.10 1.93 6.26 -51.93 -0.32 1.60 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -31.63 394.85 -8.34 -39.97 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.20 Total: 1.94 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.44 Total: -2.17 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.11 Total: -51.82 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.28 Total: -8.96 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.63 -8.34 -39.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274945228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.724 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds