Wall clock time and date at job start Tue Mar 31 2020 19:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47744 * 2 1 4 4 C 1.36936 * 120.00118 * 275.24305 * 3 2 1 5 5 H 1.08006 * 119.99923 * 37.68752 * 4 3 2 6 6 C 1.38806 * 119.99784 * 217.69212 * 4 3 2 7 7 N 1.31613 * 120.00354 * 21.67720 * 6 4 3 8 8 Si 1.86802 * 119.99764 * 201.67772 * 6 4 3 9 9 H 1.48506 * 109.47260 * 359.97438 * 8 6 4 10 10 H 1.48506 * 109.47241 * 120.00005 * 8 6 4 11 11 H 1.48501 * 109.47344 * 240.00019 * 8 6 4 12 12 C 1.46501 * 119.99770 * 95.23372 * 3 2 1 13 13 C 1.52997 * 109.47513 * 270.00515 * 12 3 2 14 14 C 1.53029 * 109.46091 * 175.00340 * 13 12 3 15 15 C 1.53192 * 109.31500 * 181.38577 * 14 13 12 16 16 N 1.46924 * 108.77511 * 305.36505 * 15 14 13 17 17 C 1.34781 * 120.62945 * 233.58340 * 16 15 14 18 18 O 1.21278 * 120.00224 * 359.97438 * 17 16 15 19 19 C 1.50705 * 119.99628 * 180.02562 * 17 16 15 20 20 C 1.50697 * 109.46963 * 180.02562 * 19 17 16 21 21 C 1.41385 * 126.80555 * 124.99769 * 20 19 17 22 22 C 1.35446 * 103.98813 * 180.20552 * 21 20 19 23 23 C 1.50695 * 126.77867 * 179.74655 * 22 21 20 24 24 O 1.34045 * 106.44558 * 359.65112 * 22 21 20 25 25 N 1.20926 * 111.56437 * 0.37879 * 24 22 21 26 26 C 1.46920 * 118.73916 * 53.85714 * 16 15 14 27 27 C 1.53044 * 109.45969 * 295.07308 * 13 12 3 28 28 H 1.09003 * 109.47227 * 300.00278 * 1 2 3 29 29 H 1.09002 * 109.47083 * 59.99501 * 1 2 3 30 30 H 1.08996 * 109.47440 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47227 * 239.99722 * 2 1 3 32 32 H 1.09002 * 109.47083 * 120.00499 * 2 1 3 33 33 H 0.97002 * 120.00301 * 180.02562 * 7 6 4 34 34 H 1.09006 * 109.46528 * 150.00575 * 12 3 2 35 35 H 1.09001 * 109.47074 * 30.00840 * 12 3 2 36 36 H 1.08994 * 109.45829 * 55.02739 * 13 12 3 37 37 H 1.09004 * 109.50154 * 61.43363 * 14 13 12 38 38 H 1.09001 * 109.52658 * 301.35055 * 14 13 12 39 39 H 1.08995 * 109.59192 * 185.57502 * 15 14 13 40 40 H 1.09000 * 109.70312 * 65.22128 * 15 14 13 41 41 H 1.08998 * 109.47684 * 59.99921 * 19 17 16 42 42 H 1.09002 * 109.47153 * 299.99851 * 19 17 16 43 43 H 1.08001 * 128.00260 * 359.94216 * 21 20 19 44 44 H 1.08997 * 109.47241 * 89.99476 * 23 22 21 45 45 H 1.08998 * 109.47182 * 210.00041 * 23 22 21 46 46 H 1.09004 * 109.47187 * 329.99478 * 23 22 21 47 47 H 1.08999 * 109.58895 * 65.92952 * 26 16 15 48 48 H 1.09002 * 109.59390 * 186.35107 * 26 16 15 49 49 H 1.08999 * 109.49241 * 298.56447 * 27 13 12 50 50 H 1.09004 * 109.49895 * 58.62841 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1446 2.0628 -1.1809 5 1 1.4118 1.9285 -1.9629 6 6 3.2142 2.9264 -1.3729 7 7 4.3072 2.7906 -0.6525 8 14 3.1023 4.2814 -2.6540 9 1 1.7787 4.2206 -3.3245 10 1 3.2629 5.6017 -1.9934 11 1 4.1766 4.0988 -3.6628 12 6 2.3718 2.0331 1.2635 13 6 1.1406 2.7390 1.8350 14 6 1.4762 3.3136 3.2131 15 6 0.2315 3.9894 3.7971 16 7 -0.2636 4.9820 2.8336 17 6 -0.4680 6.2604 3.2086 18 8 -0.2433 6.6007 4.3507 19 6 -0.9768 7.2667 2.2087 20 6 -1.1176 8.6106 2.8758 21 6 -0.5351 9.8291 2.4575 22 6 -0.9549 10.7267 3.3809 23 6 -0.6246 12.1963 3.4260 24 8 -1.7240 10.0501 4.2456 25 7 -1.8000 8.8797 3.9512 26 6 -0.5376 4.5533 1.4553 27 6 0.7209 3.8724 0.8962 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.0546 3.3944 -0.7864 34 1 3.1605 2.7645 1.0867 35 1 2.7232 1.2840 1.9730 36 1 0.3231 2.0241 1.9289 37 1 2.2767 4.0471 3.1163 38 1 1.7976 2.5093 3.8748 39 1 0.4900 4.4855 4.7325 40 1 -0.5403 3.2420 3.9809 41 1 -1.9471 6.9448 1.8308 42 1 -0.2721 7.3445 1.3808 43 1 0.1012 10.0029 1.6023 44 1 -1.3725 12.7542 2.8626 45 1 -0.6214 12.5364 4.4616 46 1 0.3591 12.3613 2.9864 47 1 -1.3699 3.8495 1.4502 48 1 -0.7867 5.4214 0.8451 49 1 1.5286 4.6005 0.8212 50 1 0.5051 3.4655 -0.0918 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274945228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:24 Heat of formation + Delta-G solvation = 18.484882 kcal Electronic energy + Delta-G solvation = -30000.063193 eV Core-core repulsion = 26030.244118 eV Total energy + Delta-G solvation = -3969.819075 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.91304 -41.26495 -39.09857 -37.28077 -35.69992 -34.33616 -34.15849 -33.70896 -32.18331 -30.68433 -30.22381 -28.61120 -28.11753 -25.90077 -24.38665 -23.99243 -23.84966 -22.27122 -21.73070 -20.88572 -19.69375 -18.79237 -18.49901 -18.31381 -17.87967 -16.89566 -16.79154 -16.52172 -15.80063 -15.54125 -15.52650 -15.12980 -14.89093 -14.76051 -14.47543 -14.32019 -14.12493 -14.01668 -13.94122 -13.84863 -13.54517 -13.35530 -13.16960 -13.08661 -12.95121 -12.90196 -12.61881 -12.24053 -12.16478 -12.07787 -12.03128 -11.86683 -11.63565 -11.55721 -11.27133 -11.15092 -10.99751 -10.74457 -10.39017 -10.22656 -9.65616 -8.44652 -7.72384 -5.34416 0.56858 1.19366 1.46167 1.51818 1.53040 1.59616 2.01726 2.28840 2.56182 3.10064 3.31732 3.40282 3.65159 3.72690 3.93999 4.08645 4.11107 4.16273 4.20083 4.23841 4.27838 4.41741 4.46818 4.50532 4.55476 4.63535 4.68311 4.74366 4.81965 4.84073 4.88471 4.90752 4.92245 4.94242 5.01123 5.13123 5.16531 5.25618 5.26543 5.36140 5.39418 5.44069 5.52765 5.66900 5.74098 5.81597 5.96786 6.36339 6.55826 7.08022 7.27391 7.36120 7.97423 8.51449 9.22111 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013696 B = 0.003105 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.962157 B = 9014.637334 C =10270.428516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.243 4.243 5 H 0.056 0.944 6 C -0.030 4.030 7 N -0.920 5.920 8 Si 0.938 3.062 9 H -0.259 1.259 10 H -0.289 1.289 11 H -0.301 1.301 12 C 0.156 3.844 13 C -0.088 4.088 14 C -0.118 4.118 15 C 0.120 3.880 16 N -0.605 5.605 17 C 0.511 3.489 18 O -0.581 6.581 19 C -0.060 4.060 20 C 0.014 3.986 21 C -0.240 4.240 22 C -0.034 4.034 23 C -0.071 4.071 24 O 0.085 5.915 25 N -0.382 5.382 26 C 0.108 3.892 27 C -0.108 4.108 28 H 0.050 0.950 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.026 0.974 32 H 0.038 0.962 33 H 0.246 0.754 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.197 0.803 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.031 0.969 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.037 12.610 4.473 17.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.009 3.991 3 N -0.319 5.319 4 C -0.374 4.374 5 H 0.073 0.927 6 C -0.227 4.227 7 N -0.565 5.565 8 Si 0.767 3.233 9 H -0.183 1.183 10 H -0.216 1.216 11 H -0.229 1.229 12 C 0.030 3.970 13 C -0.109 4.109 14 C -0.157 4.157 15 C -0.003 4.003 16 N -0.337 5.337 17 C 0.300 3.700 18 O -0.462 6.462 19 C -0.100 4.100 20 C -0.145 4.145 21 C -0.261 4.261 22 C -0.097 4.097 23 C -0.128 4.128 24 O 0.018 5.982 25 N -0.086 5.086 26 C -0.014 4.014 27 C -0.146 4.146 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.214 0.786 44 H 0.126 0.874 45 H 0.110 0.890 46 H 0.126 0.874 47 H 0.105 0.895 48 H 0.122 0.878 49 H 0.050 0.950 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.527 12.089 5.875 18.374 hybrid contribution 1.228 0.544 -1.198 1.800 sum -11.299 12.634 4.677 17.583 Atomic orbital electron populations 1.22151 0.97221 1.00519 1.00940 1.20960 0.93853 0.86048 0.98215 1.43984 1.76320 1.09265 1.02369 1.19055 1.03473 1.20378 0.94463 0.92677 1.25693 0.94066 1.03354 0.99613 1.70151 1.03775 1.38091 1.44448 0.85669 0.77923 0.80349 0.79401 1.18315 1.21564 1.22878 1.20823 0.95427 0.95479 0.85280 1.21579 0.99456 0.96788 0.93071 1.21835 0.96751 0.99667 0.97453 1.21538 0.96150 0.90680 0.91921 1.48230 1.64441 1.08390 1.12654 1.20820 0.77336 0.83107 0.88767 1.90685 1.53715 1.79507 1.22269 1.20165 1.06001 0.86612 0.97222 1.23232 0.98989 0.98031 0.94233 1.22764 1.07701 0.90568 1.05068 1.25332 0.94960 0.99317 0.90132 1.20565 1.04467 0.82171 1.05614 1.84785 1.53775 1.14488 1.45116 1.73853 1.22702 0.95482 1.16602 1.22152 0.98016 1.01005 0.80220 1.21795 0.95910 0.96716 1.00194 0.93071 0.94137 0.92165 0.95509 0.94337 0.94437 0.92565 0.96559 0.91421 0.94113 0.90206 0.90975 0.89954 0.84662 0.84262 0.78594 0.87409 0.89034 0.87366 0.89511 0.87756 0.95032 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.69 10.21 71.98 0.73 -3.96 16 2 C 0.13 5.27 6.44 86.38 0.56 5.83 16 3 N -0.60 -27.15 2.31 -701.99 -1.62 -28.78 16 4 C -0.24 -12.08 7.35 84.03 0.62 -11.47 16 5 H 0.06 2.75 7.92 -2.91 -0.02 2.73 16 6 C -0.03 -1.56 4.94 84.86 0.42 -1.14 16 7 N -0.92 -51.78 11.50 21.65 0.25 -51.53 16 8 Si 0.94 41.55 29.61 68.60 2.03 43.59 16 9 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 12 C 0.16 6.78 4.84 86.38 0.42 7.20 16 13 C -0.09 -3.03 2.35 -10.77 -0.03 -3.05 16 14 C -0.12 -3.71 5.36 30.67 0.16 -3.54 16 15 C 0.12 3.45 6.43 86.36 0.56 4.00 16 16 N -0.60 -17.20 2.97 -818.08 -2.43 -19.63 16 17 C 0.51 15.87 7.69 87.66 0.67 16.54 16 18 O -0.58 -23.08 15.01 -3.02 -0.05 -23.12 16 19 C -0.06 -1.40 4.64 29.10 0.14 -1.26 16 20 C 0.01 0.38 6.10 43.58 0.27 0.64 16 21 C -0.24 -4.94 11.05 22.40 0.25 -4.70 16 22 C -0.03 -0.66 7.49 25.04 0.19 -0.47 16 23 C -0.07 -0.60 10.45 71.23 0.74 0.14 16 24 O 0.09 2.29 11.20 71.58 0.80 3.09 16 25 N -0.38 -12.03 11.46 -49.55 -0.57 -12.60 16 26 C 0.11 2.67 6.37 86.51 0.55 3.22 16 27 C -0.11 -3.62 4.97 30.82 0.15 -3.46 16 28 H 0.05 1.54 6.47 -2.39 -0.02 1.52 16 29 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.03 1.10 8.08 -2.39 -0.02 1.08 16 32 H 0.04 1.43 7.83 -2.39 -0.02 1.41 16 33 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 34 H 0.06 2.91 5.54 -2.38 -0.01 2.89 16 35 H 0.02 0.69 7.86 -2.39 -0.02 0.68 16 36 H 0.07 2.19 6.47 -2.39 -0.02 2.18 16 37 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.29 7.01 -2.39 -0.02 2.28 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.14 2.44 7.93 -2.39 -0.02 2.42 16 42 H 0.14 2.55 7.70 -2.39 -0.02 2.53 16 43 H 0.20 2.78 8.06 -2.91 -0.02 2.76 16 44 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 47 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.10 2.02 5.93 -2.39 -0.01 2.01 16 49 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.08 3.07 6.26 -2.39 -0.01 3.06 16 Total: -1.00 -71.58 394.85 5.75 -65.83 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.93 Total: 18.63 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 6.40 Total: 4.52 kcal Atomic # 7 Polarization: -108.17 SS G_CDS: -4.37 Total: -112.54 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.76 Total: -20.04 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.59 kcal Total: -71.58 5.75 -65.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274945228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.318 kcal (2) G-P(sol) polarization free energy of solvation -71.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds