Wall clock time and date at job start Tue Mar 31 2020 19:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47567 * 2 1 4 4 C 1.36449 * 124.85578 * 89.97153 * 3 2 1 5 5 C 1.50706 * 125.56535 * 359.97438 * 4 3 2 6 6 C 1.34487 * 108.85986 * 180.25172 * 4 3 2 7 7 C 1.46684 * 106.32938 * 359.65788 * 6 4 3 8 8 C 1.47264 * 126.93969 * 180.13025 * 7 6 4 9 9 O 1.21627 * 120.00346 * 180.24715 * 8 7 6 10 10 N 1.34779 * 119.99761 * 0.25249 * 8 7 6 11 11 C 1.46501 * 119.99908 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47438 * 179.97438 * 11 10 8 13 13 O 1.42900 * 110.64083 * 303.14424 * 12 11 10 14 14 C 1.55156 * 110.72503 * 179.97438 * 12 11 10 15 15 C 1.54906 * 101.58545 * 206.13347 * 14 12 11 16 16 N 1.47427 * 104.82768 * 37.00925 * 15 14 12 17 17 C 1.36944 * 125.64412 * 155.91557 * 16 15 14 18 18 H 1.07999 * 119.99897 * 179.97438 * 17 16 15 19 19 C 1.38817 * 119.99839 * 359.97438 * 17 16 15 20 20 N 1.31613 * 120.00496 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99571 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47571 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47110 * 119.99714 * 21 19 17 24 24 H 1.48503 * 109.47140 * 239.99944 * 21 19 17 25 25 C 1.47019 * 108.70893 * 335.87212 * 16 15 14 26 26 C 1.34662 * 124.84943 * 270.00083 * 3 2 1 27 27 C 1.50701 * 125.80364 * 359.95885 * 26 3 2 28 28 H 1.08999 * 109.46922 * 59.99626 * 1 2 3 29 29 H 1.08999 * 109.47393 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46592 * 300.00319 * 1 2 3 31 31 H 1.09003 * 109.46592 * 239.99681 * 2 1 3 32 32 H 1.08999 * 109.46922 * 120.00374 * 2 1 3 33 33 H 1.08999 * 109.47015 * 90.00071 * 5 4 3 34 34 H 1.09000 * 109.46646 * 209.99224 * 5 4 3 35 35 H 1.09000 * 109.47248 * 329.99941 * 5 4 3 36 36 H 1.07998 * 126.82844 * 179.75558 * 6 4 3 37 37 H 0.96998 * 120.00167 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.46850 * 300.00332 * 11 10 8 39 39 H 1.08998 * 109.47278 * 59.99765 * 11 10 8 40 40 H 0.96698 * 114.00251 * 59.29169 * 13 12 11 41 41 H 1.09003 * 111.00155 * 324.21471 * 14 12 11 42 42 H 1.09005 * 110.99993 * 88.02030 * 14 12 11 43 43 H 1.09000 * 110.36573 * 155.84790 * 15 14 12 44 44 H 1.08998 * 110.36874 * 278.06349 * 15 14 12 45 45 H 0.96996 * 120.00558 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.88054 * 241.64785 * 25 16 15 47 47 H 1.08999 * 109.88435 * 120.47212 * 25 16 15 48 48 H 1.09001 * 109.47023 * 89.99885 * 27 26 3 49 49 H 1.08995 * 109.46911 * 210.00411 * 27 26 3 50 50 H 1.09000 * 109.46787 * 329.99436 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2779 2.1165 1.1197 5 6 2.1084 1.6408 2.5396 6 6 2.7038 3.3371 0.7491 7 6 2.7118 3.3434 -0.7177 8 6 3.1057 4.4580 -1.5959 9 8 3.0594 4.3260 -2.8041 10 7 3.5176 5.6244 -1.0606 11 6 3.9100 6.7331 -1.9342 12 6 4.3320 7.9304 -1.0804 13 8 3.2788 8.3130 -0.1936 14 6 4.7548 9.1232 -1.9782 15 6 5.7311 9.8833 -1.0461 16 7 6.4530 8.8269 -0.3137 17 6 7.6915 8.9549 0.2564 18 1 8.1367 8.1181 0.7741 19 6 8.3747 10.1602 0.1689 20 7 7.8324 11.1798 -0.4624 21 14 10.0638 10.3348 0.9473 22 1 10.4464 9.0533 1.5928 23 1 11.0586 10.6782 -0.1005 24 1 10.0291 11.4120 1.9689 25 6 5.6228 7.6137 -0.2959 26 6 2.2750 2.1066 -1.1051 27 6 2.1093 1.6356 -2.5270 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.0362 1.1831 2.8827 34 1 1.8629 2.4882 3.1797 35 1 1.3035 0.9071 2.5833 36 1 2.9856 4.1502 1.4017 37 1 3.5543 5.7298 -0.0971 38 1 4.7445 6.4224 -2.5628 39 1 3.0664 7.0156 -2.5639 40 1 3.0035 7.6137 0.4150 41 1 5.2640 8.7745 -2.8767 42 1 3.8956 9.7432 -2.2342 43 1 6.4276 10.4817 -1.6334 44 1 5.1779 10.5173 -0.3533 45 1 8.3096 12.0220 -0.5232 46 1 5.3761 7.3485 0.7321 47 1 6.1558 6.7926 -0.7752 48 1 1.1003 1.8641 -2.8702 49 1 2.8336 2.1428 -3.1644 50 1 2.2744 0.5592 -2.5748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278790043.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:15 Heat of formation + Delta-G solvation = -18.394703 kcal Electronic energy + Delta-G solvation = -29433.404753 eV Core-core repulsion = 25461.986459 eV Total energy + Delta-G solvation = -3971.418294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.71482 -39.46557 -38.16110 -35.08679 -34.45742 -33.94525 -32.85910 -32.05034 -30.03991 -29.50116 -29.23953 -28.00953 -25.85215 -24.92316 -24.10409 -23.25480 -21.78568 -20.45500 -19.84763 -19.81614 -18.98542 -17.29155 -16.88949 -16.61206 -15.81158 -15.60758 -15.41355 -15.03871 -14.74741 -14.69028 -14.03238 -13.83782 -13.75057 -13.62403 -13.48465 -13.39103 -13.22894 -13.04728 -12.84112 -12.73861 -12.63718 -12.33846 -12.18658 -12.03116 -11.88382 -11.73815 -11.55450 -11.51660 -10.99267 -10.85950 -10.68999 -10.27970 -10.08758 -9.98258 -9.66300 -9.63419 -9.32982 -8.96027 -8.69958 -8.61790 -8.12652 -6.81135 -5.62616 -3.04593 1.68690 2.20687 2.49524 3.41639 3.46306 3.47087 3.49529 3.64628 4.18836 4.38806 4.48887 4.49377 4.56137 4.60684 4.67913 4.88187 4.92808 5.06792 5.08184 5.08631 5.23371 5.26114 5.29011 5.41276 5.47482 5.49224 5.50841 5.56894 5.60512 5.70612 5.72606 5.84849 5.98432 6.05652 6.15762 6.31086 6.50122 6.52784 6.57107 6.65971 6.68581 6.74078 6.92138 7.05802 7.60905 7.65631 7.70447 7.88597 8.01295 8.38417 8.47204 9.24254 9.84712 10.49573 11.41214 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.002435 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.269893 B =11494.122610 C =12227.891295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.438 5.438 4 C 0.010 3.990 5 C -0.084 4.084 6 C -0.164 4.164 7 C -0.232 4.232 8 C 0.592 3.408 9 O -0.554 6.554 10 N -0.722 5.722 11 C 0.107 3.893 12 C 0.106 3.894 13 O -0.543 6.543 14 C -0.128 4.128 15 C 0.156 3.844 16 N -0.600 5.600 17 C -0.222 4.222 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.915 3.085 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.117 3.883 26 C 0.106 3.894 27 C -0.092 4.092 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.145 0.855 37 H 0.396 0.604 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.363 0.637 41 H 0.076 0.924 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.018 0.982 45 H 0.252 0.748 46 H 0.023 0.977 47 H 0.031 0.969 48 H 0.075 0.925 49 H 0.101 0.899 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.099 -23.331 1.939 28.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.028 4.028 3 N -0.116 5.116 4 C -0.097 4.097 5 C -0.141 4.141 6 C -0.188 4.188 7 C -0.242 4.242 8 C 0.382 3.618 9 O -0.434 6.434 10 N -0.374 5.374 11 C -0.017 4.017 12 C 0.064 3.936 13 O -0.347 6.347 14 C -0.167 4.167 15 C 0.031 3.969 16 N -0.326 5.326 17 C -0.351 4.351 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.569 5.569 21 Si 0.746 3.254 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.010 4.010 26 C -0.011 4.011 27 C -0.150 4.150 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.163 0.837 37 H 0.231 0.769 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.209 0.791 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.049 0.951 48 H 0.094 0.906 49 H 0.120 0.880 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.004 -23.011 0.814 28.041 hybrid contribution 0.804 -0.408 1.389 1.655 sum -15.200 -23.419 2.203 28.006 Atomic orbital electron populations 1.22165 0.94169 1.03022 1.03406 1.21862 0.95699 0.80749 1.04475 1.43625 1.51025 1.11818 1.05101 1.20170 1.08404 0.92546 0.88611 1.20330 1.02043 1.02036 0.89714 1.21800 1.07008 0.96894 0.93115 1.20080 1.16015 0.94957 0.93153 1.17306 0.76094 0.81441 0.86992 1.90718 1.55582 1.82419 1.14699 1.45719 1.68010 1.13385 1.10260 1.22022 1.00828 0.85482 0.93331 1.22561 0.86786 0.93844 0.90373 1.86623 1.54584 1.42148 1.51390 1.23043 1.00111 0.95586 0.97957 1.21928 0.92153 0.90253 0.92532 1.44434 1.16334 1.07611 1.64265 1.19113 0.91133 0.97229 1.27580 0.90496 1.24798 0.98997 0.95854 1.01057 1.69803 1.37445 1.02627 1.47043 0.85991 0.83589 0.77464 0.78398 1.20569 1.21718 1.21761 1.21924 0.90710 0.91683 0.96634 1.20242 1.00731 0.91021 0.89086 1.20557 1.04225 1.00504 0.89665 0.91686 0.90661 0.91754 0.89066 0.89097 0.91071 0.89964 0.91944 0.83745 0.76920 0.90440 0.90923 0.79066 0.90592 0.91117 0.87477 0.96428 0.93740 0.95953 0.95105 0.90645 0.88008 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.24 37.16 0.38 -0.39 16 2 C 0.09 0.51 6.09 -4.05 -0.02 0.48 16 3 N -0.44 -3.98 2.69 -107.96 -0.29 -4.27 16 4 C 0.01 0.09 6.85 -81.86 -0.56 -0.47 16 5 C -0.08 -0.51 9.81 36.01 0.35 -0.16 16 6 C -0.16 -1.82 10.45 -37.50 -0.39 -2.21 16 7 C -0.23 -3.07 6.29 -103.35 -0.65 -3.72 16 8 C 0.59 9.11 7.81 -12.59 -0.10 9.02 16 9 O -0.55 -9.95 14.81 5.25 0.08 -9.87 16 10 N -0.72 -10.26 5.19 -61.44 -0.32 -10.58 16 11 C 0.11 1.71 4.74 -4.04 -0.02 1.70 16 12 C 0.11 1.91 0.93 -88.79 -0.08 1.82 16 13 O -0.54 -9.46 13.09 -35.23 -0.46 -9.92 16 14 C -0.13 -2.55 6.26 -24.59 -0.15 -2.70 16 15 C 0.16 3.93 5.88 -2.53 -0.01 3.91 16 16 N -0.60 -15.70 3.39 -170.07 -0.58 -16.28 16 17 C -0.22 -6.30 10.27 -15.05 -0.15 -6.45 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 20 N -0.92 -27.25 10.09 55.49 0.56 -26.69 16 21 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.12 2.46 6.29 -3.06 -0.02 2.44 16 26 C 0.11 1.21 6.89 -81.88 -0.56 0.64 16 27 C -0.09 -0.90 9.52 36.01 0.34 -0.56 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.40 6.88 -51.93 -0.36 0.05 16 32 H 0.09 0.36 7.52 -51.93 -0.39 -0.03 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.29 7.60 -51.93 -0.39 -0.10 16 36 H 0.14 1.35 7.70 -52.49 -0.40 0.95 16 37 H 0.40 4.85 6.39 -40.82 -0.26 4.59 16 38 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 39 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.36 4.82 7.78 45.56 0.35 5.18 16 41 H 0.08 1.44 8.05 -51.93 -0.42 1.02 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.11 2.98 5.87 -51.93 -0.31 2.68 16 44 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.02 0.46 8.07 -51.93 -0.42 0.04 16 47 H 0.03 0.65 7.77 -51.93 -0.40 0.25 16 48 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.10 1.23 6.46 -51.93 -0.34 0.89 16 50 H 0.06 0.43 6.92 -51.93 -0.36 0.07 16 LS Contribution 398.43 15.07 6.00 6.00 Total: -1.00 -35.16 398.43 -9.24 -44.41 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -7.46 Total: 6.94 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.75 Total: 2.93 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.63 Total: -57.81 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.38 Total: -19.79 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.16 -9.24 -44.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278790043.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.011 kcal (2) G-P(sol) polarization free energy of solvation -35.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds