Wall clock time and date at job start Tue Mar 31 2020 19:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46491 * 109.47567 * 2 1 4 4 C 1.36449 * 124.85578 * 89.97153 * 3 2 1 5 5 C 1.50706 * 125.56535 * 359.97438 * 4 3 2 6 6 C 1.34487 * 108.85986 * 180.25172 * 4 3 2 7 7 C 1.46684 * 106.32938 * 359.65788 * 6 4 3 8 8 C 1.47264 * 126.93969 * 180.13025 * 7 6 4 9 9 O 1.21627 * 120.00346 * 180.24715 * 8 7 6 10 10 N 1.34779 * 119.99761 * 0.25249 * 8 7 6 11 11 C 1.46501 * 119.99908 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47438 * 179.97438 * 11 10 8 13 13 O 1.42900 * 110.64083 * 303.14424 * 12 11 10 14 14 C 1.55156 * 110.72503 * 179.97438 * 12 11 10 15 15 C 1.54906 * 101.58545 * 206.13347 * 14 12 11 16 16 N 1.47427 * 104.82768 * 37.00925 * 15 14 12 17 17 C 1.36944 * 125.64412 * 155.91557 * 16 15 14 18 18 H 1.07999 * 119.99897 * 179.97438 * 17 16 15 19 19 C 1.38817 * 119.99839 * 359.97438 * 17 16 15 20 20 N 1.31613 * 120.00496 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99571 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47571 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47110 * 119.99714 * 21 19 17 24 24 H 1.48503 * 109.47140 * 239.99944 * 21 19 17 25 25 C 1.47019 * 108.70893 * 335.87212 * 16 15 14 26 26 C 1.34662 * 124.84943 * 270.00083 * 3 2 1 27 27 C 1.50701 * 125.80364 * 359.95885 * 26 3 2 28 28 H 1.08999 * 109.46922 * 59.99626 * 1 2 3 29 29 H 1.08999 * 109.47393 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46592 * 300.00319 * 1 2 3 31 31 H 1.09003 * 109.46592 * 239.99681 * 2 1 3 32 32 H 1.08999 * 109.46922 * 120.00374 * 2 1 3 33 33 H 1.08999 * 109.47015 * 90.00071 * 5 4 3 34 34 H 1.09000 * 109.46646 * 209.99224 * 5 4 3 35 35 H 1.09000 * 109.47248 * 329.99941 * 5 4 3 36 36 H 1.07998 * 126.82844 * 179.75558 * 6 4 3 37 37 H 0.96998 * 120.00167 * 359.97438 * 10 8 7 38 38 H 1.08999 * 109.46850 * 300.00332 * 11 10 8 39 39 H 1.08998 * 109.47278 * 59.99765 * 11 10 8 40 40 H 0.96698 * 114.00251 * 59.29169 * 13 12 11 41 41 H 1.09003 * 111.00155 * 324.21471 * 14 12 11 42 42 H 1.09005 * 110.99993 * 88.02030 * 14 12 11 43 43 H 1.09000 * 110.36573 * 155.84790 * 15 14 12 44 44 H 1.08998 * 110.36874 * 278.06349 * 15 14 12 45 45 H 0.96996 * 120.00558 * 179.97438 * 20 19 17 46 46 H 1.08995 * 109.88054 * 241.64785 * 25 16 15 47 47 H 1.08999 * 109.88435 * 120.47212 * 25 16 15 48 48 H 1.09001 * 109.47023 * 89.99885 * 27 26 3 49 49 H 1.08995 * 109.46911 * 210.00411 * 27 26 3 50 50 H 1.09000 * 109.46787 * 329.99436 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2779 2.1165 1.1197 5 6 2.1084 1.6408 2.5396 6 6 2.7038 3.3371 0.7491 7 6 2.7118 3.3434 -0.7177 8 6 3.1057 4.4580 -1.5959 9 8 3.0594 4.3260 -2.8041 10 7 3.5176 5.6244 -1.0606 11 6 3.9100 6.7331 -1.9342 12 6 4.3320 7.9304 -1.0804 13 8 3.2788 8.3130 -0.1936 14 6 4.7548 9.1232 -1.9782 15 6 5.7311 9.8833 -1.0461 16 7 6.4530 8.8269 -0.3137 17 6 7.6915 8.9549 0.2564 18 1 8.1367 8.1181 0.7741 19 6 8.3747 10.1602 0.1689 20 7 7.8324 11.1798 -0.4624 21 14 10.0638 10.3348 0.9473 22 1 10.4464 9.0533 1.5928 23 1 11.0586 10.6782 -0.1005 24 1 10.0291 11.4120 1.9689 25 6 5.6228 7.6137 -0.2959 26 6 2.2750 2.1066 -1.1051 27 6 2.1093 1.6356 -2.5270 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.0362 1.1831 2.8827 34 1 1.8629 2.4882 3.1797 35 1 1.3035 0.9071 2.5833 36 1 2.9856 4.1502 1.4017 37 1 3.5543 5.7298 -0.0971 38 1 4.7445 6.4224 -2.5628 39 1 3.0664 7.0156 -2.5639 40 1 3.0035 7.6137 0.4150 41 1 5.2640 8.7745 -2.8767 42 1 3.8956 9.7432 -2.2342 43 1 6.4276 10.4817 -1.6334 44 1 5.1779 10.5173 -0.3533 45 1 8.3096 12.0220 -0.5232 46 1 5.3761 7.3485 0.7321 47 1 6.1558 6.7926 -0.7752 48 1 1.1003 1.8641 -2.8702 49 1 2.8336 2.1428 -3.1644 50 1 2.2744 0.5592 -2.5748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278790043.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:14 Heat of formation + Delta-G solvation = -42.851179 kcal Electronic energy + Delta-G solvation = -29434.465265 eV Core-core repulsion = 25461.986459 eV Total energy + Delta-G solvation = -3972.478806 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.47093 -40.81688 -39.58133 -36.82968 -35.30117 -34.93083 -33.99625 -33.57474 -31.47988 -30.57572 -30.07915 -29.41503 -27.51597 -26.09606 -25.10237 -24.29397 -22.77637 -22.14253 -21.36076 -20.97697 -19.84160 -18.91433 -18.31809 -17.70114 -16.76464 -16.75494 -16.61856 -16.54568 -15.95523 -15.70307 -15.56851 -15.43402 -14.80409 -14.72871 -14.36065 -14.34937 -14.07886 -14.04459 -13.90799 -13.74081 -13.61235 -13.44475 -13.29354 -13.17192 -12.92565 -12.86361 -12.79346 -12.49317 -12.37401 -12.25667 -12.10302 -12.07697 -11.98624 -11.77147 -11.58792 -10.98566 -10.82469 -10.74898 -10.15820 -9.52199 -8.91959 -8.91018 -7.77880 -5.23111 0.75062 1.44325 1.46746 1.48160 1.58447 1.81081 2.35136 2.48750 2.57586 3.14700 3.31763 3.45276 3.71451 3.77403 3.79488 3.88022 3.92470 3.96868 4.10754 4.13129 4.27569 4.38697 4.50808 4.50994 4.60007 4.63253 4.69044 4.70966 4.77449 4.80461 4.82559 4.85213 4.94465 4.95213 4.98634 5.06872 5.08563 5.13808 5.25756 5.32477 5.42735 5.45831 5.61041 5.79180 5.85392 6.15001 6.28690 6.38110 6.60234 6.76162 7.09148 7.32407 7.75706 8.39946 9.24474 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.002435 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.269893 B =11494.122610 C =12227.891295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 N -0.432 5.432 4 C 0.015 3.985 5 C -0.082 4.082 6 C -0.185 4.185 7 C -0.267 4.267 8 C 0.588 3.412 9 O -0.588 6.588 10 N -0.715 5.715 11 C 0.122 3.878 12 C 0.127 3.873 13 O -0.552 6.552 14 C -0.120 4.120 15 C 0.160 3.840 16 N -0.622 5.622 17 C -0.239 4.239 18 H 0.082 0.918 19 C -0.069 4.069 20 N -0.949 5.949 21 Si 0.983 3.017 22 H -0.266 1.266 23 H -0.290 1.290 24 H -0.292 1.292 25 C 0.115 3.885 26 C 0.099 3.901 27 C -0.088 4.088 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.154 0.846 37 H 0.406 0.594 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.383 0.617 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.076 0.924 44 H -0.014 1.014 45 H 0.248 0.752 46 H 0.033 0.967 47 H 0.033 0.967 48 H 0.079 0.921 49 H 0.075 0.925 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.007 -26.222 3.298 31.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.035 4.035 3 N -0.109 5.109 4 C -0.093 4.093 5 C -0.139 4.139 6 C -0.209 4.209 7 C -0.277 4.277 8 C 0.379 3.621 9 O -0.470 6.470 10 N -0.367 5.367 11 C -0.002 4.002 12 C 0.085 3.915 13 O -0.360 6.360 14 C -0.159 4.159 15 C 0.035 3.965 16 N -0.349 5.349 17 C -0.368 4.368 18 H 0.100 0.900 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.811 3.189 22 H -0.190 1.190 23 H -0.217 1.217 24 H -0.219 1.219 25 C -0.011 4.011 26 C -0.019 4.019 27 C -0.145 4.145 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.172 0.828 37 H 0.243 0.757 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.232 0.768 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.004 0.996 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.942 -25.956 2.217 31.075 hybrid contribution 1.021 0.402 1.019 1.498 sum -15.921 -25.554 3.236 30.281 Atomic orbital electron populations 1.22136 0.93391 1.04247 1.02497 1.22222 0.96298 0.78834 1.06150 1.43905 1.49812 1.12909 1.04275 1.20701 1.06541 0.92044 0.90064 1.20435 1.03195 1.02824 0.87446 1.22005 1.08307 0.98310 0.92234 1.20096 1.18389 0.95141 0.94096 1.17701 0.75482 0.81961 0.86911 1.90692 1.57163 1.83030 1.16153 1.45586 1.67771 1.12776 1.10557 1.21716 1.00544 0.85053 0.92911 1.22199 0.85839 0.93636 0.89832 1.86587 1.53961 1.43531 1.51873 1.22908 0.99466 0.96018 0.97484 1.21653 0.92137 0.90409 0.92265 1.44720 1.16502 1.09309 1.64323 1.19494 0.92271 0.97494 1.27538 0.90038 1.25683 1.02781 0.95684 1.01975 1.70053 1.38756 1.02851 1.48222 0.84942 0.78976 0.77692 0.77282 1.19029 1.21706 1.21910 1.22095 0.91442 0.89882 0.97681 1.20459 1.00235 0.90966 0.90285 1.20507 1.03605 1.01929 0.88481 0.93015 0.88369 0.92222 0.87883 0.87029 0.90140 0.89284 0.90141 0.82812 0.75749 0.91369 0.90599 0.76806 0.89524 0.89494 0.90577 0.99632 0.94249 0.94917 0.94888 0.90226 0.90616 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 71.98 0.74 -0.29 16 2 C 0.08 0.65 6.09 86.38 0.53 1.17 16 3 N -0.43 -6.91 2.69 -495.48 -1.33 -8.24 16 4 C 0.01 0.24 6.85 40.98 0.28 0.53 16 5 C -0.08 -0.74 9.81 71.24 0.70 -0.04 16 6 C -0.19 -3.87 10.45 23.62 0.25 -3.63 16 7 C -0.27 -6.95 6.29 -19.04 -0.12 -7.07 16 8 C 0.59 18.14 7.81 86.62 0.68 18.81 16 9 O -0.59 -21.48 14.81 -4.12 -0.06 -21.54 16 10 N -0.72 -19.87 5.19 -466.53 -2.42 -22.30 16 11 C 0.12 3.82 4.74 86.38 0.41 4.23 16 12 C 0.13 4.47 0.93 -9.61 -0.01 4.46 16 13 O -0.55 -18.54 13.09 -148.98 -1.95 -20.49 16 14 C -0.12 -4.77 6.26 31.98 0.20 -4.57 16 15 C 0.16 8.32 5.88 86.85 0.51 8.83 16 16 N -0.62 -33.03 3.39 -691.99 -2.35 -35.38 16 17 C -0.24 -13.70 10.27 84.03 0.86 -12.84 16 18 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.07 -3.98 5.49 84.86 0.47 -3.52 16 20 N -0.95 -57.86 10.09 21.65 0.22 -57.64 16 21 Si 0.98 46.40 29.55 68.60 2.03 48.43 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 C 0.11 4.77 6.29 86.73 0.55 5.32 16 26 C 0.10 2.16 6.89 41.78 0.29 2.45 16 27 C -0.09 -1.66 9.52 71.24 0.68 -0.98 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 29 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.57 6.88 -2.39 -0.02 0.55 16 32 H 0.11 0.43 7.52 -2.39 -0.02 0.41 16 33 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.08 0.45 7.60 -2.39 -0.02 0.43 16 36 H 0.15 2.70 7.70 -2.91 -0.02 2.68 16 37 H 0.41 9.53 6.39 -92.71 -0.59 8.94 16 38 H 0.07 2.29 8.06 -2.39 -0.02 2.27 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.38 9.48 7.78 -74.06 -0.58 8.90 16 41 H 0.09 3.25 8.05 -2.39 -0.02 3.23 16 42 H 0.09 3.16 8.14 -2.38 -0.02 3.15 16 43 H 0.08 4.43 5.87 -2.39 -0.01 4.41 16 44 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 45 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 46 H 0.03 1.31 8.07 -2.39 -0.02 1.29 16 47 H 0.03 1.38 7.77 -2.39 -0.02 1.36 16 48 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.08 1.86 6.46 -2.39 -0.02 1.85 16 50 H 0.09 1.09 6.92 -2.39 -0.02 1.08 16 Total: -1.00 -78.22 398.43 0.92 -77.31 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: -0.21 Total: 26.99 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 7.00 Total: 12.86 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -5.88 Total: -123.56 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -2.01 Total: -42.03 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -78.22 0.92 -77.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278790043.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.457 kcal (2) G-P(sol) polarization free energy of solvation -78.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds