Wall clock time and date at job start Tue Mar 31 2020 19:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46968 * 2 1 4 4 N 1.46501 * 109.46715 * 119.99979 * 2 1 3 5 5 C 1.46503 * 119.99944 * 296.05786 * 4 2 1 6 6 C 1.53004 * 109.46989 * 270.00067 * 5 4 2 7 7 N 1.46503 * 109.46989 * 179.97438 * 6 5 4 8 8 C 1.46501 * 119.99944 * 89.99933 * 7 6 5 9 9 C 1.36938 * 120.00010 * 270.00432 * 7 6 5 10 10 H 1.08000 * 120.00034 * 21.29088 * 9 7 6 11 11 C 1.38809 * 119.99785 * 201.30138 * 9 7 6 12 12 N 1.31620 * 120.00459 * 11.12899 * 11 9 7 13 13 Si 1.86807 * 119.99821 * 191.13733 * 11 9 7 14 14 H 1.48499 * 109.47157 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.46927 * 119.99831 * 13 11 9 16 16 H 1.48496 * 109.46649 * 239.99692 * 13 11 9 17 17 C 1.34773 * 119.99865 * 116.06016 * 4 2 1 18 18 O 1.21287 * 119.99642 * 184.71681 * 17 4 2 19 19 C 1.50696 * 120.00318 * 4.71790 * 17 4 2 20 20 H 1.08991 * 109.47216 * 47.67705 * 19 17 4 21 21 C 1.53002 * 109.47081 * 287.67654 * 19 17 4 22 22 O 1.42901 * 109.47234 * 167.68165 * 19 17 4 23 23 C 1.35682 * 116.99567 * 209.99994 * 22 19 17 24 24 C 1.38917 * 119.67874 * 179.97438 * 23 22 19 25 25 C 1.38380 * 119.10849 * 179.74206 * 24 23 22 26 26 C 1.38833 * 118.48308 * 0.54173 * 25 24 23 27 27 C 1.38040 * 119.29010 * 359.45882 * 26 25 24 28 28 N 1.31962 * 120.83606 * 0.27611 * 27 26 25 29 29 H 1.08997 * 109.47311 * 300.00087 * 1 2 3 30 30 H 1.09003 * 109.46855 * 60.00146 * 1 2 3 31 31 H 1.09007 * 109.47439 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47311 * 239.99913 * 2 1 3 33 33 H 1.09000 * 109.46991 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47213 * 299.99635 * 3 2 1 35 35 H 1.09002 * 109.47436 * 60.00196 * 3 2 1 36 36 H 1.08995 * 109.47259 * 30.00129 * 5 4 2 37 37 H 1.08997 * 109.47126 * 150.00370 * 5 4 2 38 38 H 1.08995 * 109.47171 * 300.00116 * 6 5 4 39 39 H 1.08997 * 109.46939 * 60.00188 * 6 5 4 40 40 H 1.08998 * 109.46806 * 93.55172 * 8 7 6 41 41 H 1.09000 * 109.47105 * 213.55346 * 8 7 6 42 42 H 1.08996 * 109.46957 * 333.55144 * 8 7 6 43 43 H 0.96999 * 120.00322 * 180.02562 * 12 11 9 44 44 H 1.09008 * 109.46669 * 64.99983 * 21 19 17 45 45 H 1.08995 * 109.47701 * 184.99599 * 21 19 17 46 46 H 1.09006 * 109.47349 * 305.00495 * 21 19 17 47 47 H 1.07998 * 120.44963 * 0.02562 * 24 23 22 48 48 H 1.07997 * 120.75927 * 180.29638 * 25 24 23 49 49 H 1.07997 * 120.35248 * 179.72818 * 26 25 24 50 50 H 1.07999 * 119.58387 * 180.25242 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.7369 -0.1417 2.5251 6 6 2.8608 0.8141 2.9304 7 7 2.5791 1.3635 4.2590 8 6 3.0669 0.6732 5.4556 9 6 1.8598 2.5221 4.3824 10 1 1.2176 2.8474 3.5773 11 6 1.9561 3.2787 5.5422 12 7 2.8921 3.0097 6.4276 13 14 0.7572 4.6785 5.8466 14 1 -0.1912 4.7744 4.7079 15 1 0.0027 4.4204 7.0993 16 1 1.5073 5.9537 5.9743 17 6 2.7262 -1.8309 1.0742 18 8 3.0570 -2.4482 2.0644 19 6 3.1070 -2.3388 -0.2926 20 1 3.5264 -1.5221 -0.8799 21 6 1.8647 -2.8879 -0.9969 22 8 4.0784 -3.3786 -0.1608 23 6 4.9690 -3.5215 -1.1743 24 6 5.9380 -4.5145 -1.1036 25 6 6.8370 -4.6532 -2.1464 26 6 6.7415 -3.7820 -3.2232 27 6 5.7533 -2.8183 -3.2266 28 7 4.9066 -2.7140 -2.2198 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.7908 0.3989 2.5020 37 1 1.6731 -0.9549 3.2480 38 1 3.8069 0.2734 2.9535 39 1 2.9245 1.6273 2.2075 40 1 4.0303 1.0905 5.7484 41 1 2.3520 0.8048 6.2678 42 1 3.1813 -0.3893 5.2408 43 1 2.9592 3.5381 7.2383 44 1 1.1604 -2.0757 -1.1770 45 1 2.1539 -3.3354 -1.9477 46 1 1.3944 -3.6437 -0.3677 47 1 5.9861 -5.1723 -0.2485 48 1 7.5980 -5.4190 -2.1214 49 1 7.4304 -3.8603 -4.0513 50 1 5.6721 -2.1407 -4.0637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278926521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:06 Heat of formation + Delta-G solvation = 0.864670 kcal Electronic energy + Delta-G solvation = -30002.237282 eV Core-core repulsion = 26031.654138 eV Total energy + Delta-G solvation = -3970.583145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.03703 -40.00995 -38.03740 -36.61833 -35.42595 -32.80691 -32.54436 -31.89823 -30.96226 -30.26468 -28.11087 -27.24758 -25.78859 -25.05041 -24.00150 -23.56442 -22.66291 -21.59720 -20.49865 -19.05158 -18.60231 -17.45554 -16.76970 -16.57244 -16.14173 -15.98271 -15.74815 -14.94077 -14.79879 -14.71705 -14.23943 -14.17086 -13.70716 -13.63280 -13.43300 -13.39426 -13.06306 -12.83762 -12.62504 -12.58113 -12.25206 -12.19013 -12.09053 -11.93307 -11.70706 -11.48308 -11.28557 -11.04429 -10.88860 -10.80516 -10.74123 -10.44842 -10.22638 -10.08762 -9.89530 -9.86085 -9.67709 -9.46453 -8.75123 -8.65247 -8.37279 -6.69798 -5.67863 -3.14014 0.88878 0.99479 2.45058 2.75533 3.37369 3.39430 3.45472 3.47389 3.52289 4.00489 4.36458 4.52802 4.56950 4.70248 4.75014 4.79846 4.85005 4.93849 4.97939 5.06941 5.15726 5.36760 5.44112 5.46914 5.48030 5.58484 5.63655 5.67729 5.74407 5.80310 5.82606 5.87562 5.91209 5.92190 6.12008 6.14861 6.25907 6.31838 6.40431 6.59322 6.75980 6.94457 6.99064 7.06867 7.50890 7.56529 7.62047 7.77774 7.87342 8.34127 8.44037 9.27932 9.91620 10.41190 11.37075 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.002688 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.088057 B =10412.989330 C =10990.179299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.121 3.879 3 C -0.168 4.168 4 N -0.596 5.596 5 C 0.094 3.906 6 C 0.138 3.862 7 N -0.600 5.600 8 C 0.163 3.837 9 C -0.253 4.253 10 H 0.068 0.932 11 C 0.000 4.000 12 N -0.908 5.908 13 Si 0.904 3.096 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.513 3.487 18 O -0.519 6.519 19 C 0.073 3.927 20 H 0.112 0.888 21 C -0.168 4.168 22 O -0.275 6.275 23 C 0.326 3.674 24 C -0.189 4.189 25 C -0.040 4.040 26 C -0.217 4.217 27 C 0.140 3.860 28 N -0.542 5.542 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.035 0.965 39 H 0.054 0.946 40 H 0.026 0.974 41 H 0.047 0.953 42 H -0.002 1.002 43 H 0.251 0.749 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.136 0.864 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -12.958 -23.119 26.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.018 3.982 3 C -0.226 4.226 4 N -0.331 5.331 5 C -0.030 4.030 6 C 0.009 3.991 7 N -0.324 5.324 8 C 0.019 3.981 9 C -0.382 4.382 10 H 0.086 0.914 11 C -0.198 4.198 12 N -0.553 5.553 13 Si 0.735 3.265 14 H -0.204 1.204 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.298 3.702 18 O -0.394 6.394 19 C 0.013 3.987 20 H 0.129 0.871 21 C -0.226 4.226 22 O -0.181 6.181 23 C 0.147 3.853 24 C -0.210 4.210 25 C -0.066 4.066 26 C -0.237 4.237 27 C -0.016 4.016 28 N -0.266 5.266 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.066 0.934 42 H 0.017 0.983 43 H 0.062 0.938 44 H 0.102 0.898 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.161 0.839 48 H 0.158 0.842 49 H 0.154 0.846 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.885 -12.705 -22.125 25.583 hybrid contribution -0.027 0.378 0.133 0.401 sum 1.858 -12.327 -21.993 25.280 Atomic orbital electron populations 1.22213 0.94752 1.02332 1.03086 1.21356 0.94782 0.94343 0.87744 1.22315 1.01847 0.95197 1.03230 1.48084 1.53520 1.23308 1.08142 1.22517 1.01199 0.98327 0.80983 1.21185 0.94383 0.94937 0.88581 1.43875 1.63497 1.25420 0.99558 1.20813 0.98937 0.89856 0.88522 1.19217 1.18237 0.98643 1.02141 0.91383 1.25018 0.97991 0.98276 0.98537 1.70105 1.32628 1.41419 1.11157 0.86188 0.80514 0.82035 0.77807 1.20380 1.21663 1.21785 1.20099 0.79061 0.81045 0.89984 1.90738 1.53172 1.56386 1.39112 1.22142 0.89554 0.91217 0.95804 0.87068 1.22308 0.96390 1.02838 1.01033 1.86403 1.40786 1.51782 1.39095 1.19942 0.88401 0.90561 0.86430 1.21121 0.96801 1.00899 1.02136 1.21423 0.96309 0.97119 0.91742 1.21972 1.02031 0.98922 1.00797 1.22418 0.89175 0.95392 0.94569 1.67272 1.29165 1.27502 1.02711 0.91302 0.91402 0.92370 0.89243 0.92060 0.91694 0.90470 0.90489 0.90519 0.94693 0.92804 0.95588 0.93420 0.98307 0.93828 0.89769 0.90984 0.91224 0.83909 0.84162 0.84609 0.82365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 8.87 37.16 0.33 -1.36 16 2 C 0.12 1.41 2.44 -67.93 -0.17 1.24 16 3 C -0.17 -2.02 7.97 37.16 0.30 -1.72 16 4 N -0.60 -9.19 2.40 -166.11 -0.40 -9.59 16 5 C 0.09 1.76 5.08 -4.04 -0.02 1.74 16 6 C 0.14 2.99 5.68 -4.04 -0.02 2.97 16 7 N -0.60 -15.66 2.93 -181.12 -0.53 -16.19 16 8 C 0.16 4.33 8.96 59.85 0.54 4.87 16 9 C -0.25 -6.95 9.68 -15.06 -0.15 -7.10 16 10 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 11 C 0.00 -0.01 5.13 -17.43 -0.09 -0.10 16 12 N -0.91 -27.06 10.52 55.49 0.58 -26.48 16 13 Si 0.90 21.93 29.57 -169.99 -5.03 16.90 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 C 0.51 8.64 7.02 -10.99 -0.08 8.56 16 18 O -0.52 -11.05 16.10 -14.05 -0.23 -11.27 16 19 C 0.07 0.98 2.05 -27.88 -0.06 0.93 16 20 H 0.11 1.41 6.10 -51.93 -0.32 1.09 16 21 C -0.17 -1.77 9.15 37.16 0.34 -1.43 16 22 O -0.28 -4.11 9.33 -38.35 -0.36 -4.47 16 23 C 0.33 4.11 7.45 -17.12 -0.13 3.98 16 24 C -0.19 -1.95 10.04 -39.28 -0.39 -2.34 16 25 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16 26 C -0.22 -1.51 10.11 -39.43 -0.40 -1.91 16 27 C 0.14 1.16 11.17 -17.57 -0.20 0.97 16 28 N -0.54 -6.13 8.65 -13.33 -0.12 -6.24 16 29 H 0.07 0.81 6.82 -51.93 -0.35 0.46 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.57 7.61 -51.93 -0.40 0.17 16 32 H 0.09 0.88 4.34 -51.93 -0.23 0.65 16 33 H 0.06 0.78 8.01 -51.93 -0.42 0.36 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.08 1.11 6.33 -51.93 -0.33 0.78 16 36 H 0.08 1.41 6.64 -51.93 -0.34 1.06 16 37 H 0.08 1.62 7.36 -51.93 -0.38 1.24 16 38 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 39 H 0.05 1.12 5.32 -51.93 -0.28 0.84 16 40 H 0.03 0.73 7.49 -51.93 -0.39 0.35 16 41 H 0.05 1.33 7.06 -51.93 -0.37 0.96 16 42 H 0.00 -0.04 8.04 -51.93 -0.42 -0.46 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.08 0.74 5.01 -51.92 -0.26 0.48 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 48 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 49 H 0.14 0.57 8.06 -52.49 -0.42 0.14 16 50 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -34.46 396.94 -8.50 -42.96 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.82 Total: -0.18 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -0.59 Total: 8.58 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.46 Total: -58.50 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.58 Total: -15.74 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.46 -8.50 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278926521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.826 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds