Wall clock time and date at job start Tue Mar 31 2020 19:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.46968 * 2 1 4 4 N 1.46501 * 109.46715 * 119.99979 * 2 1 3 5 5 C 1.46503 * 119.99944 * 296.05786 * 4 2 1 6 6 C 1.53004 * 109.46989 * 270.00067 * 5 4 2 7 7 N 1.46503 * 109.46989 * 179.97438 * 6 5 4 8 8 C 1.46501 * 119.99944 * 89.99933 * 7 6 5 9 9 C 1.36938 * 120.00010 * 270.00432 * 7 6 5 10 10 H 1.08000 * 120.00034 * 21.29088 * 9 7 6 11 11 C 1.38809 * 119.99785 * 201.30138 * 9 7 6 12 12 N 1.31620 * 120.00459 * 11.12899 * 11 9 7 13 13 Si 1.86807 * 119.99821 * 191.13733 * 11 9 7 14 14 H 1.48499 * 109.47157 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.46927 * 119.99831 * 13 11 9 16 16 H 1.48496 * 109.46649 * 239.99692 * 13 11 9 17 17 C 1.34773 * 119.99865 * 116.06016 * 4 2 1 18 18 O 1.21287 * 119.99642 * 184.71681 * 17 4 2 19 19 C 1.50696 * 120.00318 * 4.71790 * 17 4 2 20 20 H 1.08991 * 109.47216 * 47.67705 * 19 17 4 21 21 C 1.53002 * 109.47081 * 287.67654 * 19 17 4 22 22 O 1.42901 * 109.47234 * 167.68165 * 19 17 4 23 23 C 1.35682 * 116.99567 * 209.99994 * 22 19 17 24 24 C 1.38917 * 119.67874 * 179.97438 * 23 22 19 25 25 C 1.38380 * 119.10849 * 179.74206 * 24 23 22 26 26 C 1.38833 * 118.48308 * 0.54173 * 25 24 23 27 27 C 1.38040 * 119.29010 * 359.45882 * 26 25 24 28 28 N 1.31962 * 120.83606 * 0.27611 * 27 26 25 29 29 H 1.08997 * 109.47311 * 300.00087 * 1 2 3 30 30 H 1.09003 * 109.46855 * 60.00146 * 1 2 3 31 31 H 1.09007 * 109.47439 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47311 * 239.99913 * 2 1 3 33 33 H 1.09000 * 109.46991 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47213 * 299.99635 * 3 2 1 35 35 H 1.09002 * 109.47436 * 60.00196 * 3 2 1 36 36 H 1.08995 * 109.47259 * 30.00129 * 5 4 2 37 37 H 1.08997 * 109.47126 * 150.00370 * 5 4 2 38 38 H 1.08995 * 109.47171 * 300.00116 * 6 5 4 39 39 H 1.08997 * 109.46939 * 60.00188 * 6 5 4 40 40 H 1.08998 * 109.46806 * 93.55172 * 8 7 6 41 41 H 1.09000 * 109.47105 * 213.55346 * 8 7 6 42 42 H 1.08996 * 109.46957 * 333.55144 * 8 7 6 43 43 H 0.96999 * 120.00322 * 180.02562 * 12 11 9 44 44 H 1.09008 * 109.46669 * 64.99983 * 21 19 17 45 45 H 1.08995 * 109.47701 * 184.99599 * 21 19 17 46 46 H 1.09006 * 109.47349 * 305.00495 * 21 19 17 47 47 H 1.07998 * 120.44963 * 0.02562 * 24 23 22 48 48 H 1.07997 * 120.75927 * 180.29638 * 25 24 23 49 49 H 1.07997 * 120.35248 * 179.72818 * 26 25 24 50 50 H 1.07999 * 119.58387 * 180.25242 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0182 -0.6906 1.1962 5 6 1.7369 -0.1417 2.5251 6 6 2.8608 0.8141 2.9304 7 7 2.5791 1.3635 4.2590 8 6 3.0669 0.6732 5.4556 9 6 1.8598 2.5221 4.3824 10 1 1.2176 2.8474 3.5773 11 6 1.9561 3.2787 5.5422 12 7 2.8921 3.0097 6.4276 13 14 0.7572 4.6785 5.8466 14 1 -0.1912 4.7744 4.7079 15 1 0.0027 4.4204 7.0993 16 1 1.5073 5.9537 5.9743 17 6 2.7262 -1.8309 1.0742 18 8 3.0570 -2.4482 2.0644 19 6 3.1070 -2.3388 -0.2926 20 1 3.5264 -1.5221 -0.8799 21 6 1.8647 -2.8879 -0.9969 22 8 4.0784 -3.3786 -0.1608 23 6 4.9690 -3.5215 -1.1743 24 6 5.9380 -4.5145 -1.1036 25 6 6.8370 -4.6532 -2.1464 26 6 6.7415 -3.7820 -3.2232 27 6 5.7533 -2.8183 -3.2266 28 7 4.9066 -2.7140 -2.2198 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 0.7908 0.3989 2.5020 37 1 1.6731 -0.9549 3.2480 38 1 3.8069 0.2734 2.9535 39 1 2.9245 1.6273 2.2075 40 1 4.0303 1.0905 5.7484 41 1 2.3520 0.8048 6.2678 42 1 3.1813 -0.3893 5.2408 43 1 2.9592 3.5381 7.2383 44 1 1.1604 -2.0757 -1.1770 45 1 2.1539 -3.3354 -1.9477 46 1 1.3944 -3.6437 -0.3677 47 1 5.9861 -5.1723 -0.2485 48 1 7.5980 -5.4190 -2.1214 49 1 7.4304 -3.8603 -4.0513 50 1 5.6721 -2.1407 -4.0637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278926521.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:05 Heat of formation + Delta-G solvation = -20.761698 kcal Electronic energy + Delta-G solvation = -30003.175072 eV Core-core repulsion = 26031.654138 eV Total energy + Delta-G solvation = -3971.520934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98709 -41.08489 -39.00665 -38.03495 -37.26183 -34.02903 -33.45447 -33.10958 -32.54291 -31.06330 -29.75796 -28.17610 -27.94139 -26.18599 -25.22549 -24.46133 -23.74055 -22.68138 -22.35302 -20.19070 -19.55378 -18.87649 -18.36116 -17.67684 -17.25749 -16.90404 -16.78038 -16.62320 -16.01572 -15.69365 -15.55130 -15.40972 -15.12413 -14.90673 -14.60080 -14.44791 -14.32167 -14.03647 -13.90892 -13.85011 -13.55585 -13.26608 -13.10971 -12.90893 -12.83297 -12.82516 -12.77807 -12.64907 -12.49419 -12.24367 -12.14067 -12.10260 -11.92924 -11.77026 -11.46608 -10.91535 -10.82325 -10.68559 -10.57040 -9.89446 -9.48835 -8.80950 -7.83180 -5.33270 0.21378 0.33263 1.33000 1.47416 1.48288 1.50727 1.59185 2.29600 2.52341 2.83600 3.23924 3.29875 3.32001 3.67648 3.80881 3.85662 3.94299 4.05677 4.09910 4.12603 4.13874 4.23165 4.25559 4.37228 4.49954 4.57874 4.60614 4.66415 4.68919 4.79234 4.81380 4.81967 4.86223 4.96351 4.97332 5.04759 5.08554 5.10248 5.25662 5.30355 5.40520 5.43742 5.48680 5.55883 5.59022 5.65101 6.17214 6.29060 6.36324 6.85902 7.03468 7.11314 7.80814 8.28768 9.21889 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.002688 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.088057 B =10412.989330 C =10990.179299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 C -0.166 4.166 4 N -0.591 5.591 5 C 0.114 3.886 6 C 0.144 3.856 7 N -0.617 5.617 8 C 0.181 3.819 9 C -0.258 4.258 10 H 0.082 0.918 11 C -0.060 4.060 12 N -0.945 5.945 13 Si 0.975 3.025 14 H -0.259 1.259 15 H -0.294 1.294 16 H -0.293 1.293 17 C 0.506 3.494 18 O -0.575 6.575 19 C 0.082 3.918 20 H 0.121 0.879 21 C -0.158 4.158 22 O -0.307 6.307 23 C 0.291 3.709 24 C -0.208 4.208 25 C -0.037 4.037 26 C -0.204 4.204 27 C 0.128 3.872 28 N -0.557 5.557 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.116 0.884 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.048 0.952 38 H 0.015 0.985 39 H 0.066 0.934 40 H 0.001 0.999 41 H 0.027 0.973 42 H 0.011 0.989 43 H 0.248 0.752 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.058 0.942 47 H 0.139 0.861 48 H 0.172 0.828 49 H 0.172 0.828 50 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 -12.557 -27.257 30.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.015 3.985 3 C -0.223 4.223 4 N -0.324 5.324 5 C -0.011 4.011 6 C 0.017 3.983 7 N -0.340 5.340 8 C 0.036 3.964 9 C -0.387 4.387 10 H 0.100 0.900 11 C -0.254 4.254 12 N -0.592 5.592 13 Si 0.803 3.197 14 H -0.182 1.182 15 H -0.221 1.221 16 H -0.220 1.220 17 C 0.293 3.707 18 O -0.454 6.454 19 C 0.023 3.977 20 H 0.138 0.862 21 C -0.216 4.216 22 O -0.214 6.214 23 C 0.114 3.886 24 C -0.229 4.229 25 C -0.062 4.062 26 C -0.223 4.223 27 C -0.027 4.027 28 N -0.281 5.281 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.034 0.966 39 H 0.084 0.916 40 H 0.019 0.981 41 H 0.046 0.954 42 H 0.029 0.971 43 H 0.057 0.943 44 H 0.124 0.876 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.157 0.843 48 H 0.189 0.811 49 H 0.190 0.810 50 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.252 -12.303 -26.351 29.108 hybrid contribution 0.302 0.201 1.267 1.318 sum 1.554 -12.102 -25.084 27.894 Atomic orbital electron populations 1.22208 0.93086 1.02959 1.03760 1.21723 0.96065 0.94059 0.86685 1.22290 1.01165 0.95282 1.03600 1.48127 1.53060 1.23089 1.08116 1.21919 1.00078 0.96608 0.82483 1.21250 0.94552 0.95477 0.87038 1.44103 1.63644 1.25582 1.00713 1.20494 0.96989 0.90381 0.88535 1.19627 1.18058 0.98624 1.02434 0.90009 1.25906 0.99813 1.01172 0.98509 1.70288 1.34562 1.42823 1.11577 0.85075 0.78364 0.78372 0.77861 1.18239 1.22082 1.22015 1.20880 0.78041 0.80732 0.90998 1.90703 1.55283 1.58155 1.41216 1.22089 0.90777 0.91714 0.93164 0.86169 1.22279 0.95228 1.03241 1.00812 1.86351 1.41814 1.52264 1.40967 1.20184 0.89196 0.92332 0.86920 1.21342 0.97372 1.00877 1.03293 1.21850 0.95873 0.97693 0.90799 1.22422 1.01492 0.97303 1.01131 1.23073 0.88865 0.96241 0.94497 1.67226 1.30350 1.27524 1.03042 0.93078 0.88233 0.91823 0.86668 0.93152 0.88305 0.93022 0.89568 0.93341 0.96623 0.91589 0.98118 0.95420 0.97075 0.94321 0.87607 0.89797 0.92272 0.84279 0.81058 0.81024 0.79328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 8.87 71.98 0.64 -2.21 16 2 C 0.12 2.46 2.44 44.99 0.11 2.57 16 3 C -0.17 -3.63 7.97 71.98 0.57 -3.05 16 4 N -0.59 -18.23 2.40 -797.85 -1.91 -20.14 16 5 C 0.11 4.38 5.08 86.38 0.44 4.82 16 6 C 0.14 6.44 5.68 86.38 0.49 6.93 16 7 N -0.62 -33.07 2.93 -726.94 -2.13 -35.20 16 8 C 0.18 10.07 8.96 127.77 1.15 11.22 16 9 C -0.26 -14.27 9.68 84.03 0.81 -13.45 16 10 H 0.08 4.22 7.85 -2.91 -0.02 4.20 16 11 C -0.06 -3.41 5.13 84.86 0.44 -2.97 16 12 N -0.95 -57.98 10.52 21.65 0.23 -57.75 16 13 Si 0.98 45.27 29.57 68.60 2.03 47.30 16 14 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 15 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 16 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 17 C 0.51 17.52 7.02 87.66 0.62 18.14 16 18 O -0.57 -25.93 16.10 15.69 0.25 -25.68 16 19 C 0.08 2.21 2.05 29.85 0.06 2.27 16 20 H 0.12 2.94 6.10 -2.39 -0.01 2.92 16 21 C -0.16 -3.11 9.15 71.98 0.66 -2.45 16 22 O -0.31 -9.51 9.33 -71.26 -0.66 -10.17 16 23 C 0.29 7.37 7.45 84.79 0.63 8.00 16 24 C -0.21 -4.26 10.04 22.47 0.23 -4.03 16 25 C -0.04 -0.47 10.17 22.45 0.23 -0.24 16 26 C -0.20 -2.12 10.11 22.37 0.23 -1.90 16 27 C 0.13 1.76 11.17 84.63 0.95 2.71 16 28 N -0.56 -11.80 8.65 -308.95 -2.67 -14.48 16 29 H 0.05 1.10 6.82 -2.39 -0.02 1.08 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.07 7.61 -2.38 -0.02 1.05 16 32 H 0.12 1.90 4.34 -2.39 -0.01 1.89 16 33 H 0.05 1.21 8.01 -2.39 -0.02 1.19 16 34 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.41 6.33 -2.39 -0.02 1.40 16 36 H 0.09 3.16 6.64 -2.39 -0.02 3.14 16 37 H 0.05 2.15 7.36 -2.39 -0.02 2.13 16 38 H 0.02 0.74 8.07 -2.39 -0.02 0.72 16 39 H 0.07 2.78 5.32 -2.39 -0.01 2.76 16 40 H 0.00 0.03 7.49 -2.39 -0.02 0.01 16 41 H 0.03 1.60 7.06 -2.39 -0.02 1.59 16 42 H 0.01 0.56 8.04 -2.39 -0.02 0.54 16 43 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 44 H 0.11 1.55 5.01 -2.38 -0.01 1.54 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 47 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 48 H 0.17 1.03 8.06 -2.91 -0.02 1.00 16 49 H 0.17 0.55 8.06 -2.91 -0.02 0.53 16 50 H 0.19 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -79.42 396.94 4.30 -75.12 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.93 Total: 14.66 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 8.24 Total: 26.34 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -6.48 Total: -127.56 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.41 Total: -35.85 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -79.42 4.30 -75.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278926521.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.354 kcal (2) G-P(sol) polarization free energy of solvation -79.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds