Wall clock time and date at job start Tue Mar 31 2020 19:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47267 * 2 1 4 4 C 1.36445 * 124.85120 * 264.97710 * 3 2 1 5 5 C 1.34492 * 108.85954 * 180.02562 * 4 3 2 6 6 C 1.46687 * 106.32720 * 0.02562 * 5 4 3 7 7 C 1.47262 * 126.93857 * 179.97438 * 6 5 4 8 8 O 1.21633 * 120.00267 * 229.41696 * 7 6 5 9 9 N 1.34778 * 120.00029 * 49.42463 * 7 6 5 10 10 C 1.46926 * 120.62918 * 355.68014 * 9 7 6 11 11 C 1.53193 * 108.89349 * 126.46738 * 10 9 7 12 12 C 1.53043 * 109.31214 * 54.56164 * 11 10 9 13 13 C 1.53034 * 109.53913 * 298.63485 * 12 11 10 14 14 C 1.53001 * 109.50028 * 181.31686 * 13 12 11 15 15 O 1.42903 * 109.47456 * 180.02562 * 14 13 12 16 16 N 1.46501 * 109.50255 * 301.41522 * 13 12 11 17 17 C 1.36934 * 120.00292 * 179.97438 * 16 13 12 18 18 H 1.07992 * 119.99993 * 0.02562 * 17 16 13 19 19 C 1.38815 * 119.99792 * 179.97438 * 17 16 13 20 20 N 1.31624 * 120.00109 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99986 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47142 * 59.99955 * 21 19 17 23 23 H 1.48501 * 109.47455 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47487 * 300.00293 * 21 19 17 25 25 C 1.46962 * 120.65385 * 175.50126 * 9 7 6 26 26 C 1.34665 * 124.85166 * 85.28496 * 3 2 1 27 27 C 1.50697 * 125.80179 * 0.02562 * 26 3 2 28 28 H 1.09004 * 109.47258 * 59.99876 * 1 2 3 29 29 H 1.08998 * 109.47503 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47300 * 300.00387 * 1 2 3 31 31 H 1.09005 * 109.47092 * 240.00091 * 2 1 3 32 32 H 1.08994 * 109.47298 * 120.00100 * 2 1 3 33 33 H 1.08001 * 125.57473 * 0.03748 * 4 3 2 34 34 H 1.07996 * 126.83298 * 180.02562 * 5 4 3 35 35 H 1.08995 * 109.58964 * 6.60525 * 10 9 7 36 36 H 1.09010 * 109.58610 * 246.32538 * 10 9 7 37 37 H 1.08995 * 109.49908 * 174.51477 * 11 10 9 38 38 H 1.09001 * 109.49543 * 294.61221 * 11 10 9 39 39 H 1.08998 * 109.45750 * 58.65539 * 12 11 10 40 40 H 1.08998 * 109.45648 * 178.61589 * 12 11 10 41 41 H 1.09001 * 109.47034 * 300.00598 * 14 13 12 42 42 H 1.09005 * 109.46634 * 59.99968 * 14 13 12 43 43 H 0.96701 * 113.99718 * 180.02562 * 15 14 13 44 44 H 0.97002 * 119.99646 * 0.02562 * 16 13 12 45 45 H 0.97005 * 119.99858 * 179.97438 * 20 19 17 46 46 H 1.09002 * 109.46871 * 113.75031 * 25 9 7 47 47 H 1.08995 * 109.71092 * 353.46392 * 25 9 7 48 48 H 1.08997 * 109.46937 * 270.16001 * 27 26 3 49 49 H 1.09005 * 109.47054 * 30.15566 * 27 26 3 50 50 H 1.08997 * 109.47214 * 150.15440 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3707 2.0836 -1.1154 5 6 2.7716 3.3132 -0.7463 6 6 2.6544 3.3637 0.7150 7 6 2.9773 4.5035 1.5898 8 8 3.6803 4.3388 2.5687 9 7 2.4937 5.7291 1.3060 10 6 1.7221 5.9634 0.0778 11 6 0.3861 6.6151 0.4481 12 6 0.6498 7.8758 1.2747 13 6 1.3773 7.4977 2.5669 14 6 1.6113 8.7543 3.4077 15 8 2.2912 8.4007 4.6139 16 7 0.5629 6.5454 3.3260 17 6 1.0141 6.0621 4.5252 18 1 1.9700 6.3832 4.9116 19 6 0.2421 5.1602 5.2446 20 7 -0.9233 4.7692 4.7739 21 14 0.8571 4.5014 6.8808 22 1 1.0618 5.6304 7.8235 23 1 -0.1453 3.5620 7.4446 24 1 2.1436 3.7887 6.6754 25 6 2.7246 6.8560 2.2207 26 6 2.1892 2.1370 1.1014 27 6 1.9131 1.7051 2.5185 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.3335 1.7130 -2.1292 34 1 3.1121 4.1055 -1.3964 35 1 1.5386 5.0140 -0.4251 36 1 2.2806 6.6255 -0.5839 37 1 -0.1528 6.8822 -0.4609 38 1 -0.2106 5.9149 1.0328 39 1 1.2672 8.5651 0.6988 40 1 -0.2984 8.3549 1.5187 41 1 2.2185 9.4616 2.8428 42 1 0.6525 9.2121 3.6514 43 1 2.4727 9.1503 5.1973 44 1 -0.2956 6.2567 2.9788 45 1 -1.4625 4.1387 5.2765 46 1 3.3659 7.5920 1.7357 47 1 3.2037 6.4977 3.1318 48 1 0.8800 1.9395 2.7749 49 1 2.0753 0.6310 2.6091 50 1 2.5844 2.2323 3.1963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281146443.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:31 Heat of formation + Delta-G solvation = -39.149618 kcal Electronic energy + Delta-G solvation = -31764.494748 eV Core-core repulsion = 27792.176454 eV Total energy + Delta-G solvation = -3972.318294 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.33337 -40.83606 -38.97920 -37.08344 -35.55248 -34.90567 -33.79788 -32.60690 -32.46292 -30.69430 -30.03177 -27.72466 -26.65991 -26.24828 -25.50883 -24.38787 -23.05145 -22.38732 -20.90414 -19.97502 -19.33100 -18.97420 -18.03909 -17.78105 -17.23622 -17.00624 -16.43079 -16.07142 -15.78484 -15.64018 -15.59851 -15.21738 -15.02398 -14.58920 -14.43025 -14.35342 -14.20732 -13.96359 -13.72663 -13.56160 -13.50271 -13.46094 -13.19863 -12.98317 -12.88463 -12.73405 -12.71339 -12.50389 -12.42171 -12.10818 -12.08306 -11.87798 -11.67086 -11.36558 -11.27250 -10.89040 -10.63478 -10.54716 -9.47544 -9.31317 -9.00165 -8.74788 -7.77748 -4.98256 1.04398 1.38579 1.42948 1.49239 1.63933 1.89621 2.24420 2.63975 2.65511 3.42239 3.70698 3.82421 3.84045 3.91228 3.95477 4.03935 4.09390 4.14287 4.22668 4.27064 4.33897 4.41510 4.43320 4.57523 4.58004 4.61182 4.63454 4.76651 4.80709 4.81850 4.86120 4.87359 4.98216 4.98449 5.06819 5.09086 5.14133 5.20285 5.24223 5.31089 5.49282 5.55684 5.85143 5.90826 5.94210 6.20942 6.46815 6.50399 6.76906 7.17587 7.52510 7.55200 8.24586 8.48274 9.46106 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.005405 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.333415 B = 5179.513498 C = 6604.597180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.437 5.437 4 C 0.004 3.996 5 C -0.183 4.183 6 C -0.249 4.249 7 C 0.584 3.416 8 O -0.603 6.603 9 N -0.589 5.589 10 C 0.103 3.897 11 C -0.126 4.126 12 C -0.108 4.108 13 C 0.175 3.825 14 C 0.077 3.923 15 O -0.574 6.574 16 N -0.708 5.708 17 C -0.166 4.166 18 H 0.077 0.923 19 C -0.086 4.086 20 N -0.973 5.973 21 Si 0.941 3.059 22 H -0.283 1.283 23 H -0.296 1.296 24 H -0.302 1.302 25 C 0.118 3.882 26 C 0.072 3.928 27 C -0.083 4.083 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.034 0.966 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.212 0.788 34 H 0.164 0.836 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.034 0.966 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.037 0.963 43 H 0.375 0.625 44 H 0.370 0.630 45 H 0.239 0.761 46 H 0.073 0.927 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.091 0.909 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 -1.945 -19.667 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.029 4.029 3 N -0.113 5.113 4 C -0.123 4.123 5 C -0.207 4.207 6 C -0.259 4.259 7 C 0.375 3.625 8 O -0.486 6.486 9 N -0.318 5.318 10 C -0.019 4.019 11 C -0.164 4.164 12 C -0.146 4.146 13 C 0.084 3.916 14 C -0.003 4.003 15 O -0.380 6.380 16 N -0.346 5.346 17 C -0.299 4.299 18 H 0.094 0.906 19 C -0.276 4.276 20 N -0.628 5.628 21 Si 0.775 3.225 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.231 1.231 25 C -0.007 4.007 26 C -0.045 4.045 27 C -0.140 4.140 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.053 0.947 31 H 0.147 0.853 32 H 0.107 0.893 33 H 0.228 0.772 34 H 0.182 0.818 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.052 0.948 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.222 0.778 44 H 0.203 0.797 45 H 0.048 0.952 46 H 0.091 0.909 47 H 0.067 0.933 48 H 0.073 0.927 49 H 0.109 0.891 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.669 -2.980 -19.308 19.878 hybrid contribution -0.153 0.073 2.133 2.140 sum 3.515 -2.908 -17.175 17.770 Atomic orbital electron populations 1.22140 0.94135 1.04009 1.02113 1.22184 0.95727 0.78879 1.06106 1.43871 1.49772 1.12868 1.04795 1.22301 1.05422 0.92269 0.92331 1.22102 1.08949 0.98998 0.90626 1.20214 1.16175 0.94012 0.95518 1.17963 0.78321 0.83038 0.83185 1.90682 1.41242 1.85041 1.31612 1.47753 1.52894 1.08152 1.23044 1.22116 0.91680 1.02732 0.85359 1.21818 0.97235 0.96781 1.00547 1.21629 1.00827 0.98167 0.93968 1.20421 0.90755 0.88979 0.91460 1.22716 0.95161 0.96447 0.86013 1.86807 1.79793 1.37912 1.33465 1.42492 1.20649 1.50594 1.20906 1.19551 1.00659 1.14701 0.94984 0.90562 1.25118 0.98034 1.02845 1.01556 1.69770 1.13482 1.39424 1.40146 0.85643 0.76136 0.77955 0.82789 1.20976 1.22274 1.23065 1.21892 0.98108 0.87793 0.92939 1.19966 1.03601 0.91224 0.89664 1.20238 1.01361 1.01973 0.90472 0.91517 0.88353 0.94722 0.85327 0.89314 0.77176 0.81843 0.88412 0.88857 0.87687 0.94757 0.88056 0.91411 0.91542 0.94477 0.77768 0.79685 0.95210 0.90921 0.93344 0.92700 0.89077 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 10.24 71.98 0.74 -2.03 16 2 C 0.09 1.48 6.46 86.38 0.56 2.04 16 3 N -0.44 -10.89 2.69 -509.92 -1.37 -12.26 16 4 C 0.00 0.08 11.33 83.12 0.94 1.02 16 5 C -0.18 -4.85 8.74 23.62 0.21 -4.64 16 6 C -0.25 -9.48 5.24 -19.04 -0.10 -9.58 16 7 C 0.58 26.94 7.34 86.62 0.64 27.58 16 8 O -0.60 -33.87 15.51 -4.14 -0.06 -33.93 16 9 N -0.59 -23.21 2.90 -822.84 -2.39 -25.59 16 10 C 0.10 2.94 5.97 86.36 0.52 3.45 16 11 C -0.13 -3.61 5.92 30.67 0.18 -3.43 16 12 C -0.11 -3.11 4.76 30.62 0.15 -2.96 16 13 C 0.18 6.80 0.68 3.68 0.00 6.80 16 14 C 0.08 2.65 6.08 71.98 0.44 3.09 16 15 O -0.57 -22.86 10.10 -148.98 -1.50 -24.36 16 16 N -0.71 -36.18 4.75 -303.00 -1.44 -37.62 16 17 C -0.17 -9.88 8.21 84.03 0.69 -9.19 16 18 H 0.08 4.74 5.28 -2.91 -0.02 4.73 16 19 C -0.09 -5.36 5.50 84.86 0.47 -4.90 16 20 N -0.97 -62.71 13.06 21.65 0.28 -62.42 16 21 Si 0.94 52.60 29.55 68.60 2.03 54.62 16 22 H -0.28 -15.22 7.11 99.48 0.71 -14.52 16 23 H -0.30 -16.30 7.11 99.48 0.71 -15.59 16 24 H -0.30 -17.44 7.11 99.48 0.71 -16.73 16 25 C 0.12 4.81 4.83 86.36 0.42 5.23 16 26 C 0.07 2.57 6.89 41.78 0.29 2.86 16 27 C -0.08 -3.27 9.87 71.23 0.70 -2.57 16 28 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.13 1.13 8.11 -2.38 -0.02 1.11 16 32 H 0.09 1.44 7.04 -2.39 -0.02 1.43 16 33 H 0.21 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.16 3.43 7.74 -2.91 -0.02 3.40 16 35 H 0.10 2.72 4.52 -2.39 -0.01 2.71 16 36 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.03 1.31 6.75 -2.39 -0.02 1.29 16 39 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.37 10.87 9.12 -74.06 -0.68 10.19 16 44 H 0.37 20.43 6.42 -92.71 -0.60 19.84 16 45 H 0.24 15.23 8.31 -92.70 -0.77 14.46 16 46 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 47 H 0.05 2.52 5.74 -2.39 -0.01 2.51 16 48 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.09 2.79 7.02 -2.38 -0.02 2.78 16 50 H 0.05 2.45 7.02 -2.39 -0.02 2.43 16 Total: -1.00 -89.67 388.63 2.07 -87.60 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.31 Total: 41.19 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.83 Total: 12.78 kcal Atomic # 7 Polarization: -132.99 SS G_CDS: -4.91 Total: -137.90 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -1.57 Total: -58.29 kcal Atomic # 14 Polarization: 52.60 SS G_CDS: 2.03 Total: 54.62 kcal Total: -89.67 2.07 -87.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281146443.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.454 kcal (2) G-P(sol) polarization free energy of solvation -89.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds