Wall clock time and date at job start Tue Mar 31 2020 18:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47363 * 2 1 4 4 O 1.42905 * 109.47246 * 119.99817 * 2 1 3 5 5 C 1.35912 * 116.99955 * 276.18147 * 4 2 1 6 6 C 1.39139 * 120.47019 * 357.31781 * 5 4 2 7 7 C 1.38539 * 118.37347 * 179.97438 * 6 5 4 8 8 C 1.38256 * 119.21806 * 359.97438 * 7 6 5 9 9 N 1.31848 * 120.89073 * 0.02562 * 8 7 6 10 10 C 1.31845 * 121.77367 * 359.69324 * 9 8 7 11 11 C 1.50705 * 109.47360 * 239.99399 * 2 1 3 12 12 O 1.21274 * 120.00328 * 255.13923 * 11 2 1 13 13 N 1.34777 * 119.99532 * 75.13455 * 11 2 1 14 14 C 1.46505 * 120.00211 * 5.36635 * 13 11 2 15 15 C 1.46507 * 120.00037 * 185.36617 * 13 11 2 16 16 C 1.52998 * 109.46996 * 90.00009 * 15 13 11 17 17 C 1.52995 * 109.47307 * 300.00323 * 16 15 13 18 18 C 1.53002 * 109.47164 * 60.00354 * 16 15 13 19 19 C 1.52998 * 109.46936 * 180.02562 * 16 15 13 20 20 N 1.46492 * 109.47420 * 180.02562 * 19 16 15 21 21 C 1.36939 * 120.00566 * 179.97438 * 20 19 16 22 22 H 1.08001 * 119.99511 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00301 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00124 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99834 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47323 * 89.99675 * 25 23 21 27 27 H 1.48505 * 109.46613 * 209.99533 * 25 23 21 28 28 H 1.48496 * 109.46985 * 329.99133 * 25 23 21 29 29 H 1.08991 * 109.47091 * 55.22437 * 1 2 3 30 30 H 1.09001 * 109.47091 * 295.21984 * 1 2 3 31 31 H 1.09010 * 109.46989 * 175.22222 * 1 2 3 32 32 H 1.07999 * 120.81710 * 359.97438 * 6 5 4 33 33 H 1.07998 * 120.38865 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.55718 * 179.97438 * 8 7 6 35 35 H 1.08010 * 119.65431 * 180.29288 * 10 9 8 36 36 H 1.09006 * 109.46918 * 90.29231 * 14 13 11 37 37 H 1.08994 * 109.47066 * 210.29154 * 14 13 11 38 38 H 1.08996 * 109.46591 * 330.29653 * 14 13 11 39 39 H 1.08998 * 109.46776 * 210.00042 * 15 13 11 40 40 H 1.09004 * 109.46626 * 330.00065 * 15 13 11 41 41 H 1.08992 * 109.47528 * 60.00037 * 17 16 15 42 42 H 1.09000 * 109.47214 * 180.02562 * 17 16 15 43 43 H 1.09011 * 109.46836 * 300.00057 * 17 16 15 44 44 H 1.09000 * 109.47132 * 59.99741 * 18 16 15 45 45 H 1.09000 * 109.46965 * 179.97438 * 18 16 15 46 46 H 1.09003 * 109.46932 * 299.99976 * 18 16 15 47 47 H 1.09000 * 109.47089 * 300.00092 * 19 16 15 48 48 H 1.08997 * 109.47171 * 59.99747 * 19 16 15 49 49 H 0.97005 * 119.99796 * 0.02562 * 20 19 16 50 50 H 0.97003 * 120.00300 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0891 0.0565 2.3102 6 6 1.7736 1.4116 2.3064 7 6 1.8726 2.1140 3.4965 8 6 2.2777 1.4507 4.6399 9 7 2.5694 0.1652 4.6094 10 6 2.4829 -0.5401 3.4988 11 6 2.0324 -0.7105 -1.2304 12 8 2.4885 -1.8306 -1.1401 13 7 1.9747 -0.1012 -2.4312 14 6 1.5340 1.2929 -2.5248 15 6 2.3526 -0.8328 -3.6429 16 6 1.1203 -1.5293 -4.2233 17 6 0.5545 -2.5079 -3.1922 18 6 0.0589 -0.4831 -4.5696 19 6 1.5151 -2.2939 -5.4884 20 7 0.3351 -2.9604 -6.0446 21 6 0.4458 -3.7093 -7.1857 22 1 1.4032 -3.8089 -7.6753 23 6 -0.6723 -4.3412 -7.7123 24 7 -0.5660 -5.0606 -8.8094 25 14 -2.3282 -4.1693 -6.8649 26 1 -3.0444 -2.9894 -7.4124 27 1 -3.1354 -5.3928 -7.1032 28 1 -2.1210 -3.9895 -5.4055 29 1 -0.3633 0.5861 -0.8440 30 1 -0.3633 0.4379 0.9297 31 1 -0.3633 -1.0242 -0.0856 32 1 1.4594 1.9040 1.3980 33 1 1.6352 3.1670 3.5308 34 1 2.3571 1.9929 5.5705 35 1 2.7257 -1.5925 3.5138 36 1 2.3971 1.9532 -2.4401 37 1 1.0448 1.4556 -3.4851 38 1 0.8323 1.5069 -1.7186 39 1 2.7557 -0.1356 -4.3774 40 1 3.1088 -1.5782 -3.3962 41 1 0.2733 -1.9636 -2.2908 42 1 -0.3232 -3.0044 -3.6060 43 1 1.3107 -3.2533 -2.9456 44 1 0.4619 0.2140 -5.3041 45 1 -0.8189 -0.9793 -4.9835 46 1 -0.2223 0.0613 -3.6680 47 1 1.9184 -1.5971 -6.2231 48 1 2.2711 -3.0392 -5.2413 49 1 -0.5249 -2.8705 -5.6049 50 1 -1.3474 -5.5019 -9.1777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282320953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:44 Heat of formation + Delta-G solvation = -9.042344 kcal Electronic energy + Delta-G solvation = -29811.587656 eV Core-core repulsion = 25840.574911 eV Total energy + Delta-G solvation = -3971.012745 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.37675 -40.38169 -38.65874 -37.35192 -35.43272 -33.42340 -32.68503 -32.35061 -30.71338 -30.41118 -28.13170 -27.01065 -26.33279 -25.93308 -24.87415 -23.99197 -23.06136 -21.94296 -19.77030 -19.03010 -18.67817 -17.65975 -17.52198 -17.18724 -16.64434 -16.29793 -15.95622 -15.76451 -14.87472 -14.66463 -14.38279 -14.24976 -14.16210 -14.05418 -13.74752 -13.59900 -13.39357 -13.20919 -13.03106 -12.84481 -12.71644 -12.49240 -12.37095 -12.24606 -12.02321 -11.67271 -11.45503 -11.37512 -11.29979 -10.90145 -10.83488 -10.48107 -10.41777 -10.26973 -10.07950 -10.01645 -9.79935 -9.56536 -8.88535 -8.85647 -8.78379 -7.20077 -5.75474 -3.09987 0.68984 0.78844 2.12440 2.31300 3.08408 3.36236 3.36436 3.38591 3.44563 3.93887 4.07111 4.10388 4.27668 4.34646 4.39759 4.59542 4.63054 4.64264 4.76892 4.88263 4.95624 5.02378 5.08976 5.10349 5.19006 5.27282 5.31591 5.48041 5.54862 5.57895 5.59003 5.62200 5.64374 5.76064 5.82226 5.90328 5.94963 6.05665 6.17993 6.29081 6.40305 6.53031 6.61346 6.70971 6.73358 6.79370 7.09262 7.53970 7.91770 8.01557 8.43844 9.23235 9.95649 10.15957 11.43167 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.002326 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.318283 B =12034.037056 C =12218.281050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.065 3.935 3 H 0.094 0.906 4 O -0.276 6.276 5 C 0.085 3.915 6 C -0.172 4.172 7 C -0.129 4.129 8 C 0.054 3.946 9 N -0.446 5.446 10 C 0.077 3.923 11 C 0.519 3.481 12 O -0.503 6.503 13 N -0.605 5.605 14 C 0.061 3.939 15 C 0.128 3.872 16 C -0.091 4.091 17 C -0.128 4.128 18 C -0.138 4.138 19 C 0.170 3.830 20 N -0.751 5.751 21 C -0.240 4.240 22 H 0.090 0.910 23 C 0.003 3.997 24 N -0.935 5.935 25 Si 0.881 3.119 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.278 1.278 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.039 0.961 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.027 0.973 48 H 0.029 0.971 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.776 21.171 23.873 32.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.005 3.995 3 H 0.111 0.889 4 O -0.187 6.187 5 C 0.037 3.963 6 C -0.198 4.198 7 C -0.149 4.149 8 C -0.103 4.103 9 N -0.155 5.155 10 C -0.082 4.082 11 C 0.304 3.696 12 O -0.376 6.376 13 N -0.340 5.340 14 C -0.082 4.082 15 C 0.006 3.994 16 C -0.092 4.092 17 C -0.186 4.186 18 C -0.195 4.195 19 C 0.042 3.958 20 N -0.398 5.398 21 C -0.370 4.370 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.583 5.583 25 Si 0.712 3.288 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.204 1.204 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.077 0.923 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.045 0.955 48 H 0.047 0.953 49 H 0.195 0.805 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.447 19.820 24.441 31.780 hybrid contribution -1.734 0.848 -0.464 1.985 sum 2.714 20.668 23.977 31.771 Atomic orbital electron populations 1.22375 0.92235 1.05104 1.03814 1.22308 0.96052 0.96885 0.84243 0.88852 1.86277 1.80232 1.37143 1.15057 1.20276 0.96938 0.91010 0.88124 1.21749 1.04441 0.93483 1.00132 1.22005 0.98862 1.01319 0.92738 1.22705 0.98296 0.90668 0.98600 1.67770 1.12312 1.08161 1.27228 1.22295 0.99636 1.01012 0.85228 1.19832 0.79339 0.86683 0.83710 1.90778 1.43244 1.18410 1.85218 1.47640 1.66986 1.13004 1.06378 1.22170 1.00086 0.81702 1.04269 1.21598 0.97110 0.96252 0.84411 1.21178 0.95275 0.95993 0.96763 1.21771 1.01473 0.98565 0.96761 1.21918 0.99244 0.98284 1.00097 1.20554 0.90500 0.93942 0.90795 1.42720 1.05992 1.60656 1.30425 1.19066 0.96792 1.21743 0.99412 0.89226 1.24654 0.97393 0.99769 0.97416 1.69695 1.29317 1.37048 1.22231 0.86593 0.85647 0.77322 0.79247 1.21140 1.21706 1.20389 0.89712 0.90706 0.90138 0.84224 0.84390 0.82451 0.81683 0.92300 0.89490 0.91144 0.89980 0.89259 0.94203 0.92594 0.92036 0.92608 0.92181 0.93361 0.95493 0.95340 0.80496 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.31 9.00 37.16 0.33 -0.98 16 2 C 0.07 0.59 1.81 -27.88 -0.05 0.54 16 3 H 0.09 0.57 5.14 -51.93 -0.27 0.31 16 4 O -0.28 -3.12 9.40 -38.90 -0.37 -3.49 16 5 C 0.08 0.81 6.54 -39.08 -0.26 0.55 16 6 C -0.17 -1.19 8.47 -39.14 -0.33 -1.52 16 7 C -0.13 -0.77 10.11 -39.46 -0.40 -1.16 16 8 C 0.05 0.39 11.18 -17.54 -0.20 0.20 16 9 N -0.45 -4.40 10.36 -13.12 -0.14 -4.54 16 10 C 0.08 0.77 11.14 -17.38 -0.19 0.57 16 11 C 0.52 6.28 5.20 -10.98 -0.06 6.22 16 12 O -0.50 -8.33 14.77 -13.88 -0.20 -8.54 16 13 N -0.61 -6.11 2.40 -181.56 -0.44 -6.54 16 14 C 0.06 0.36 8.87 59.85 0.53 0.90 16 15 C 0.13 1.56 4.61 -4.04 -0.02 1.54 16 16 C -0.09 -1.34 0.60 -154.51 -0.09 -1.43 16 17 C -0.13 -2.11 7.05 37.16 0.26 -1.84 16 18 C -0.14 -1.83 7.05 37.16 0.26 -1.56 16 19 C 0.17 3.23 5.15 -4.05 -0.02 3.21 16 20 N -0.75 -17.75 4.81 -59.92 -0.29 -18.04 16 21 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 22 H 0.09 2.73 8.06 -52.49 -0.42 2.30 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 24 N -0.93 -29.59 13.97 55.49 0.78 -28.81 16 25 Si 0.88 22.27 27.74 -169.99 -4.71 17.56 16 26 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 29 H 0.08 0.47 6.19 -51.93 -0.32 0.15 16 30 H 0.07 0.46 7.42 -51.93 -0.39 0.07 16 31 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 32 H 0.14 0.64 5.90 -52.49 -0.31 0.33 16 33 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 34 H 0.16 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.51 6.03 -51.93 -0.31 0.20 16 38 H 0.07 0.29 4.56 -51.93 -0.24 0.05 16 39 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.09 1.24 7.36 -51.93 -0.38 0.86 16 41 H 0.04 0.59 6.22 -51.93 -0.32 0.27 16 42 H 0.06 1.02 6.86 -51.93 -0.36 0.67 16 43 H 0.06 1.11 7.86 -51.92 -0.41 0.70 16 44 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 45 H 0.06 0.94 6.86 -51.93 -0.36 0.59 16 46 H 0.05 0.51 5.98 -51.93 -0.31 0.20 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.36 8.36 3.22 -40.82 -0.13 8.23 16 50 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -36.01 385.80 -7.53 -43.53 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.49 Total: 4.83 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.48 Total: -1.78 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.08 Total: -57.93 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: -0.57 Total: -12.02 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.71 Total: 17.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.01 -7.53 -43.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282320953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.493 kcal (2) G-P(sol) polarization free energy of solvation -36.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds