Wall clock time and date at job start Tue Mar 31 2020 18:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47363 * 2 1 4 4 O 1.42905 * 109.47246 * 119.99817 * 2 1 3 5 5 C 1.35912 * 116.99955 * 276.18147 * 4 2 1 6 6 C 1.39139 * 120.47019 * 357.31781 * 5 4 2 7 7 C 1.38539 * 118.37347 * 179.97438 * 6 5 4 8 8 C 1.38256 * 119.21806 * 359.97438 * 7 6 5 9 9 N 1.31848 * 120.89073 * 0.02562 * 8 7 6 10 10 C 1.31845 * 121.77367 * 359.69324 * 9 8 7 11 11 C 1.50705 * 109.47360 * 239.99399 * 2 1 3 12 12 O 1.21274 * 120.00328 * 255.13923 * 11 2 1 13 13 N 1.34777 * 119.99532 * 75.13455 * 11 2 1 14 14 C 1.46505 * 120.00211 * 5.36635 * 13 11 2 15 15 C 1.46507 * 120.00037 * 185.36617 * 13 11 2 16 16 C 1.52998 * 109.46996 * 90.00009 * 15 13 11 17 17 C 1.52995 * 109.47307 * 300.00323 * 16 15 13 18 18 C 1.53002 * 109.47164 * 60.00354 * 16 15 13 19 19 C 1.52998 * 109.46936 * 180.02562 * 16 15 13 20 20 N 1.46492 * 109.47420 * 180.02562 * 19 16 15 21 21 C 1.36939 * 120.00566 * 179.97438 * 20 19 16 22 22 H 1.08001 * 119.99511 * 0.02562 * 21 20 19 23 23 C 1.38811 * 120.00301 * 179.97438 * 21 20 19 24 24 N 1.31615 * 120.00124 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99834 * 0.02562 * 23 21 20 26 26 H 1.48493 * 109.47323 * 89.99675 * 25 23 21 27 27 H 1.48505 * 109.46613 * 209.99533 * 25 23 21 28 28 H 1.48496 * 109.46985 * 329.99133 * 25 23 21 29 29 H 1.08991 * 109.47091 * 55.22437 * 1 2 3 30 30 H 1.09001 * 109.47091 * 295.21984 * 1 2 3 31 31 H 1.09010 * 109.46989 * 175.22222 * 1 2 3 32 32 H 1.07999 * 120.81710 * 359.97438 * 6 5 4 33 33 H 1.07998 * 120.38865 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.55718 * 179.97438 * 8 7 6 35 35 H 1.08010 * 119.65431 * 180.29288 * 10 9 8 36 36 H 1.09006 * 109.46918 * 90.29231 * 14 13 11 37 37 H 1.08994 * 109.47066 * 210.29154 * 14 13 11 38 38 H 1.08996 * 109.46591 * 330.29653 * 14 13 11 39 39 H 1.08998 * 109.46776 * 210.00042 * 15 13 11 40 40 H 1.09004 * 109.46626 * 330.00065 * 15 13 11 41 41 H 1.08992 * 109.47528 * 60.00037 * 17 16 15 42 42 H 1.09000 * 109.47214 * 180.02562 * 17 16 15 43 43 H 1.09011 * 109.46836 * 300.00057 * 17 16 15 44 44 H 1.09000 * 109.47132 * 59.99741 * 18 16 15 45 45 H 1.09000 * 109.46965 * 179.97438 * 18 16 15 46 46 H 1.09003 * 109.46932 * 299.99976 * 18 16 15 47 47 H 1.09000 * 109.47089 * 300.00092 * 19 16 15 48 48 H 1.08997 * 109.47171 * 59.99747 * 19 16 15 49 49 H 0.97005 * 119.99796 * 0.02562 * 20 19 16 50 50 H 0.97003 * 120.00300 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0891 0.0565 2.3102 6 6 1.7736 1.4116 2.3064 7 6 1.8726 2.1140 3.4965 8 6 2.2777 1.4507 4.6399 9 7 2.5694 0.1652 4.6094 10 6 2.4829 -0.5401 3.4988 11 6 2.0324 -0.7105 -1.2304 12 8 2.4885 -1.8306 -1.1401 13 7 1.9747 -0.1012 -2.4312 14 6 1.5340 1.2929 -2.5248 15 6 2.3526 -0.8328 -3.6429 16 6 1.1203 -1.5293 -4.2233 17 6 0.5545 -2.5079 -3.1922 18 6 0.0589 -0.4831 -4.5696 19 6 1.5151 -2.2939 -5.4884 20 7 0.3351 -2.9604 -6.0446 21 6 0.4458 -3.7093 -7.1857 22 1 1.4032 -3.8089 -7.6753 23 6 -0.6723 -4.3412 -7.7123 24 7 -0.5660 -5.0606 -8.8094 25 14 -2.3282 -4.1693 -6.8649 26 1 -3.0444 -2.9894 -7.4124 27 1 -3.1354 -5.3928 -7.1032 28 1 -2.1210 -3.9895 -5.4055 29 1 -0.3633 0.5861 -0.8440 30 1 -0.3633 0.4379 0.9297 31 1 -0.3633 -1.0242 -0.0856 32 1 1.4594 1.9040 1.3980 33 1 1.6352 3.1670 3.5308 34 1 2.3571 1.9929 5.5705 35 1 2.7257 -1.5925 3.5138 36 1 2.3971 1.9532 -2.4401 37 1 1.0448 1.4556 -3.4851 38 1 0.8323 1.5069 -1.7186 39 1 2.7557 -0.1356 -4.3774 40 1 3.1088 -1.5782 -3.3962 41 1 0.2733 -1.9636 -2.2908 42 1 -0.3232 -3.0044 -3.6060 43 1 1.3107 -3.2533 -2.9456 44 1 0.4619 0.2140 -5.3041 45 1 -0.8189 -0.9793 -4.9835 46 1 -0.2223 0.0613 -3.6680 47 1 1.9184 -1.5971 -6.2231 48 1 2.2711 -3.0392 -5.2413 49 1 -0.5249 -2.8705 -5.6049 50 1 -1.3474 -5.5019 -9.1777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282320953.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:43 Heat of formation + Delta-G solvation = -33.324980 kcal Electronic energy + Delta-G solvation = -29812.640630 eV Core-core repulsion = 25840.574911 eV Total energy + Delta-G solvation = -3972.065719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.07749 -41.16812 -39.46676 -38.52013 -36.59959 -35.05676 -33.37879 -33.15559 -32.54239 -31.03580 -28.91961 -28.21857 -27.57820 -27.11984 -25.60022 -24.67026 -24.18729 -23.28351 -20.72760 -20.23673 -19.61371 -19.30984 -18.26975 -17.78485 -17.40199 -17.15898 -16.88653 -16.59457 -16.42138 -15.69835 -15.57694 -15.33690 -15.21636 -14.86850 -14.78795 -14.56890 -14.30384 -14.18837 -14.12232 -13.91849 -13.73788 -13.41557 -13.35943 -13.25845 -12.95911 -12.83983 -12.63110 -12.55729 -12.53368 -12.26183 -12.22830 -12.08431 -11.75189 -11.69827 -11.52846 -10.99645 -10.84784 -10.69348 -10.57505 -9.65952 -9.47326 -9.29076 -8.04052 -5.36300 0.14578 0.23988 1.32941 1.37166 1.40024 1.44002 1.46624 2.38625 2.45684 2.79644 3.25672 3.27260 3.51666 3.56981 3.62190 3.75364 3.77866 3.85112 3.89455 3.92043 4.03430 4.14809 4.21964 4.32073 4.42272 4.48901 4.53738 4.59346 4.63704 4.75521 4.77400 4.80007 4.86417 4.87732 4.92983 5.02940 5.07994 5.09088 5.11256 5.12790 5.17494 5.36205 5.41137 5.49496 5.51336 5.74732 6.12126 6.20254 6.33224 6.97086 7.06578 7.07622 7.83729 8.03083 9.17713 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.002326 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.318283 B =12034.037056 C =12218.281050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.068 3.932 3 H 0.130 0.870 4 O -0.308 6.308 5 C 0.068 3.932 6 C -0.166 4.166 7 C -0.118 4.118 8 C 0.045 3.955 9 N -0.475 5.475 10 C 0.048 3.952 11 C 0.510 3.490 12 O -0.562 6.562 13 N -0.599 5.599 14 C 0.048 3.952 15 C 0.134 3.866 16 C -0.080 4.080 17 C -0.119 4.119 18 C -0.135 4.135 19 C 0.165 3.835 20 N -0.752 5.752 21 C -0.231 4.231 22 H 0.056 0.944 23 C -0.065 4.065 24 N -0.983 5.983 25 Si 0.952 3.048 26 H -0.270 1.270 27 H -0.296 1.296 28 H -0.259 1.259 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.171 0.829 33 H 0.178 0.822 34 H 0.183 0.817 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.082 0.918 47 H 0.037 0.963 48 H 0.010 0.990 49 H 0.366 0.634 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 26.134 25.633 36.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.009 3.991 3 H 0.148 0.852 4 O -0.220 6.220 5 C 0.020 3.980 6 C -0.192 4.192 7 C -0.137 4.137 8 C -0.112 4.112 9 N -0.184 5.184 10 C -0.109 4.109 11 C 0.297 3.703 12 O -0.440 6.440 13 N -0.332 5.332 14 C -0.093 4.093 15 C 0.011 3.989 16 C -0.081 4.081 17 C -0.177 4.177 18 C -0.192 4.192 19 C 0.038 3.962 20 N -0.398 5.398 21 C -0.362 4.362 22 H 0.074 0.926 23 C -0.256 4.256 24 N -0.634 5.634 25 Si 0.779 3.221 26 H -0.196 1.196 27 H -0.223 1.223 28 H -0.184 1.184 29 H 0.129 0.871 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.188 0.812 33 H 0.195 0.805 34 H 0.200 0.800 35 H 0.171 0.829 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.091 0.909 45 H 0.054 0.946 46 H 0.100 0.900 47 H 0.055 0.945 48 H 0.028 0.972 49 H 0.201 0.799 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.903 24.852 26.230 36.250 hybrid contribution -1.110 -0.639 -0.976 1.610 sum 1.792 24.213 25.254 35.032 Atomic orbital electron populations 1.22399 0.90833 1.04079 1.05831 1.22435 0.96894 0.97682 0.82125 0.85228 1.86240 1.80944 1.38762 1.16096 1.20341 0.98083 0.92258 0.87273 1.22109 1.03161 0.92150 1.01776 1.22432 0.96804 1.02950 0.91527 1.23286 0.97455 0.89964 1.00480 1.67741 1.13515 1.09750 1.27423 1.22237 1.01405 1.01059 0.86192 1.20549 0.78431 0.86179 0.85113 1.90759 1.45917 1.21135 1.86193 1.47695 1.66094 1.14446 1.04933 1.22555 1.01856 0.79034 1.05844 1.21381 0.95041 0.96560 0.85906 1.21058 0.97197 0.95881 0.94003 1.21670 0.99669 0.98475 0.97871 1.21914 0.97364 0.97812 1.02072 1.20729 0.88629 0.93819 0.93023 1.42705 1.07669 1.60329 1.29133 1.19052 0.95389 1.21474 1.00313 0.92608 1.25484 1.01707 1.00023 0.98425 1.69880 1.30443 1.38773 1.24333 0.85463 0.80253 0.77328 0.79078 1.19592 1.22318 1.18368 0.87113 0.89037 0.92865 0.81203 0.80462 0.79994 0.82900 0.89988 0.88607 0.88568 0.87161 0.91867 0.92498 0.94673 0.94791 0.90928 0.94584 0.89956 0.94469 0.97161 0.79950 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 9.00 71.98 0.65 -1.33 16 2 C 0.07 1.04 1.81 29.85 0.05 1.10 16 3 H 0.13 0.95 5.14 -2.39 -0.01 0.94 16 4 O -0.31 -6.84 9.40 -73.98 -0.70 -7.53 16 5 C 0.07 1.22 6.54 22.60 0.15 1.37 16 6 C -0.17 -1.68 8.47 22.56 0.19 -1.49 16 7 C -0.12 -0.90 10.11 22.35 0.23 -0.68 16 8 C 0.05 0.55 11.18 84.69 0.95 1.50 16 9 N -0.47 -9.25 10.36 -195.43 -2.02 -11.27 16 10 C 0.05 1.00 11.14 84.80 0.94 1.94 16 11 C 0.51 11.62 5.20 87.66 0.46 12.08 16 12 O -0.56 -19.24 14.77 15.58 0.23 -19.01 16 13 N -0.60 -10.31 2.40 -846.74 -2.03 -12.34 16 14 C 0.05 0.31 8.87 127.77 1.13 1.45 16 15 C 0.13 3.04 4.61 86.38 0.40 3.43 16 16 C -0.08 -2.26 0.60 -52.18 -0.03 -2.30 16 17 C -0.12 -3.92 7.05 71.98 0.51 -3.42 16 18 C -0.13 -3.10 7.05 71.98 0.51 -2.59 16 19 C 0.16 6.28 5.15 86.38 0.44 6.73 16 20 N -0.75 -35.63 4.81 -343.47 -1.65 -37.28 16 21 C -0.23 -13.48 10.47 84.03 0.88 -12.60 16 22 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 23 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 24 N -0.98 -64.06 13.97 21.65 0.30 -63.76 16 25 Si 0.95 46.27 27.74 68.60 1.90 48.17 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 28 H -0.26 -11.61 6.52 99.48 0.65 -10.96 16 29 H 0.11 0.63 6.19 -2.39 -0.01 0.62 16 30 H 0.09 0.75 7.42 -2.39 -0.02 0.74 16 31 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 32 H 0.17 0.56 5.90 -2.91 -0.02 0.54 16 33 H 0.18 -0.04 8.06 -2.91 -0.02 -0.06 16 34 H 0.18 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 36 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 37 H 0.10 0.54 6.03 -2.39 -0.01 0.52 16 38 H 0.10 0.16 4.56 -2.39 -0.01 0.15 16 39 H 0.11 1.89 8.07 -2.39 -0.02 1.87 16 40 H 0.06 1.79 7.36 -2.38 -0.02 1.77 16 41 H 0.06 1.65 6.22 -2.39 -0.01 1.63 16 42 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 43 H 0.03 1.27 7.86 -2.38 -0.02 1.26 16 44 H 0.07 1.45 8.08 -2.39 -0.02 1.43 16 45 H 0.04 1.02 6.86 -2.39 -0.02 1.00 16 46 H 0.08 1.33 5.98 -2.39 -0.01 1.31 16 47 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.37 16.65 3.22 -92.70 -0.30 16.35 16 50 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -85.29 385.80 4.55 -80.74 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 0.60 Total: 20.53 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 7.92 Total: 1.75 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -5.40 Total: -124.65 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.46 Total: -26.54 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.90 Total: 48.17 kcal Total: -85.29 4.55 -80.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282320953.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.414 kcal (2) G-P(sol) polarization free energy of solvation -85.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds