Wall clock time and date at job start Tue Mar 31 2020 18:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47541 * 2 1 4 4 O 1.42897 * 109.47477 * 239.99692 * 2 1 3 5 5 C 1.35909 * 116.99755 * 85.32034 * 4 2 1 6 6 C 1.39140 * 120.47350 * 354.62197 * 5 4 2 7 7 C 1.38536 * 118.37229 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22456 * 0.02562 * 7 6 5 9 9 N 1.31851 * 120.88709 * 359.97423 * 8 7 6 10 10 C 1.31843 * 121.77646 * 0.02562 * 9 8 7 11 11 C 1.50706 * 109.46967 * 119.99943 * 2 1 3 12 12 O 1.21281 * 120.00259 * 119.99707 * 11 2 1 13 13 N 1.34777 * 120.00099 * 300.00340 * 11 2 1 14 14 C 1.46505 * 119.99734 * 359.97438 * 13 11 2 15 15 C 1.46500 * 120.00086 * 180.02562 * 13 11 2 16 16 C 1.52998 * 109.47480 * 89.99294 * 15 13 11 17 17 C 1.52996 * 109.47080 * 300.00034 * 16 15 13 18 18 C 1.53003 * 109.46786 * 59.99998 * 16 15 13 19 19 C 1.52998 * 109.47119 * 179.97438 * 16 15 13 20 20 N 1.46498 * 109.47376 * 179.97438 * 19 16 15 21 21 C 1.36931 * 120.00152 * 180.02562 * 20 19 16 22 22 H 1.07997 * 120.00440 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99875 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00148 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99846 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47124 * 90.00050 * 25 23 21 27 27 H 1.48500 * 109.46924 * 209.99616 * 25 23 21 28 28 H 1.48502 * 109.47163 * 330.00107 * 25 23 21 29 29 H 1.08998 * 109.46848 * 300.00287 * 1 2 3 30 30 H 1.08998 * 109.46734 * 59.99862 * 1 2 3 31 31 H 1.08997 * 109.47541 * 179.97438 * 1 2 3 32 32 H 1.07991 * 120.81475 * 359.97438 * 6 5 4 33 33 H 1.07999 * 120.38729 * 179.97438 * 7 6 5 34 34 H 1.07996 * 119.56040 * 179.97438 * 8 7 6 35 35 H 1.08005 * 119.65342 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.46472 * 90.00697 * 14 13 11 37 37 H 1.08997 * 109.46774 * 210.00507 * 14 13 11 38 38 H 1.08992 * 109.46929 * 330.00445 * 14 13 11 39 39 H 1.08997 * 109.46794 * 209.99678 * 15 13 11 40 40 H 1.09000 * 109.46636 * 329.99132 * 15 13 11 41 41 H 1.08998 * 109.47232 * 60.00171 * 17 16 15 42 42 H 1.09003 * 109.47100 * 180.02562 * 17 16 15 43 43 H 1.08999 * 109.47420 * 299.99766 * 17 16 15 44 44 H 1.09001 * 109.46947 * 60.00561 * 18 16 15 45 45 H 1.09003 * 109.46377 * 179.97438 * 18 16 15 46 46 H 1.08997 * 109.46911 * 299.99571 * 18 16 15 47 47 H 1.09004 * 109.47389 * 300.00507 * 19 16 15 48 48 H 1.09004 * 109.47147 * 59.99694 * 19 16 15 49 49 H 0.97006 * 119.99638 * 0.02562 * 20 19 16 50 50 H 0.96996 * 119.99885 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1189 0.0642 -2.3025 6 6 1.6754 1.3826 -2.3342 7 6 1.8108 2.0945 -3.5150 8 6 2.3771 1.4766 -4.6145 9 7 2.7874 0.2252 -4.5511 10 6 2.6766 -0.4866 -3.4468 11 6 2.0323 -0.7104 1.2305 12 8 2.7295 -1.6966 1.1193 13 7 1.7066 -0.2500 2.4546 14 6 0.8648 0.9415 2.5890 15 6 2.1954 -0.9403 3.6508 16 6 3.5430 -0.3474 4.0670 17 6 4.5507 -0.5232 2.9292 18 6 3.3725 1.1422 4.3717 19 6 4.0531 -1.0679 5.3166 20 7 5.3438 -0.5007 5.7148 21 6 5.9971 -0.9907 6.8139 22 1 5.5608 -1.7950 7.3876 23 6 7.2199 -0.4528 7.1915 24 7 7.7515 0.5277 6.4928 25 14 8.1109 -1.1207 8.6914 26 1 9.0072 -2.2313 8.2809 27 1 8.9163 -0.0381 9.3115 28 1 7.1175 -1.6237 9.6740 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2356 1.8396 -1.4602 33 1 1.4771 3.1198 -3.5761 34 1 2.4849 2.0264 -5.5378 35 1 3.0245 -1.5090 -3.4330 36 1 -0.1833 0.6438 2.6222 37 1 1.1226 1.4667 3.5086 38 1 1.0287 1.6001 1.7362 39 1 1.4774 -0.8151 4.4613 40 1 2.3168 -2.0015 3.4337 41 1 4.1871 -0.0096 2.0393 42 1 5.5110 -0.1013 3.2259 43 1 4.6722 -1.5845 2.7122 44 1 2.6547 1.2674 5.1823 45 1 4.3326 1.5645 4.6686 46 1 3.0090 1.6558 3.4817 47 1 3.3350 -0.9424 6.1270 48 1 4.1744 -2.1293 5.1000 49 1 5.7355 0.2220 5.1998 50 1 8.6060 0.9033 6.7564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282320954.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:47 Heat of formation + Delta-G solvation = -10.188176 kcal Electronic energy + Delta-G solvation = -29726.829863 eV Core-core repulsion = 25755.767431 eV Total energy + Delta-G solvation = -3971.062432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29665 -40.29696 -38.55830 -37.17200 -35.40273 -33.43353 -32.60065 -32.18021 -30.44855 -30.06202 -28.01518 -26.88968 -26.31559 -25.48450 -24.71819 -23.92894 -23.10147 -22.24628 -19.76080 -18.91532 -18.39364 -17.45009 -17.24306 -17.10927 -16.50647 -16.30435 -15.91445 -15.46502 -14.84313 -14.64491 -14.37933 -14.24310 -14.02790 -13.95310 -13.61278 -13.41729 -13.31752 -13.13738 -12.89668 -12.70697 -12.61046 -12.44855 -12.28883 -12.08524 -11.76999 -11.62130 -11.27461 -11.14126 -10.98106 -10.80404 -10.74369 -10.31542 -10.24363 -10.18418 -9.98342 -9.93345 -9.70965 -9.64427 -8.84005 -8.77734 -8.67303 -6.87088 -5.73587 -3.01083 0.77546 0.87210 2.22069 2.42087 3.15854 3.45033 3.45597 3.50653 3.52048 4.00558 4.16443 4.20852 4.36256 4.39520 4.45249 4.62336 4.72056 4.73445 4.85373 4.97570 5.03522 5.07023 5.14714 5.25813 5.34024 5.36083 5.38796 5.56627 5.58791 5.66001 5.67527 5.68509 5.88012 5.92047 6.01471 6.07701 6.11281 6.26627 6.37116 6.49753 6.57242 6.72843 6.76971 6.81810 6.93102 6.97389 7.18607 7.62341 7.73076 8.01630 8.45929 9.57062 10.16011 10.50684 11.49589 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.002346 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.952274 B =11932.215970 C =12605.215220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.066 3.934 3 H 0.097 0.903 4 O -0.276 6.276 5 C 0.085 3.915 6 C -0.171 4.171 7 C -0.130 4.130 8 C 0.054 3.946 9 N -0.446 5.446 10 C 0.078 3.922 11 C 0.517 3.483 12 O -0.503 6.503 13 N -0.604 5.604 14 C 0.065 3.935 15 C 0.129 3.871 16 C -0.086 4.086 17 C -0.123 4.123 18 C -0.136 4.136 19 C 0.165 3.835 20 N -0.728 5.728 21 C -0.236 4.236 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.034 0.966 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.067 0.933 46 H 0.044 0.956 47 H 0.018 0.982 48 H 0.020 0.980 49 H 0.385 0.615 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.588 5.811 -18.094 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.006 3.994 3 H 0.114 0.886 4 O -0.187 6.187 5 C 0.037 3.963 6 C -0.197 4.197 7 C -0.150 4.150 8 C -0.102 4.102 9 N -0.155 5.155 10 C -0.081 4.081 11 C 0.302 3.698 12 O -0.376 6.376 13 N -0.338 5.338 14 C -0.078 4.078 15 C 0.007 3.993 16 C -0.088 4.088 17 C -0.181 4.181 18 C -0.193 4.193 19 C 0.037 3.963 20 N -0.373 5.373 21 C -0.367 4.367 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.156 0.844 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.036 0.964 48 H 0.038 0.962 49 H 0.220 0.780 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -19.763 4.581 -18.697 27.589 hybrid contribution 0.202 0.739 1.551 1.730 sum -19.561 5.320 -17.146 26.550 Atomic orbital electron populations 1.22596 0.92632 1.04876 1.04409 1.22250 0.95790 0.97034 0.84335 0.88553 1.86249 1.80669 1.36259 1.15491 1.20265 0.96499 0.91208 0.88341 1.21770 1.03749 0.94030 1.00158 1.22004 0.98891 1.01094 0.92997 1.22697 0.97368 0.91303 0.98872 1.67765 1.14694 1.07480 1.25583 1.22295 0.98560 1.01086 0.86167 1.19848 0.80976 0.85189 0.83755 1.90785 1.35741 1.25343 1.85757 1.47619 1.51341 1.29335 1.05537 1.22189 0.94394 0.87387 1.03825 1.21617 0.95285 0.97406 0.85016 1.21122 0.94373 0.96233 0.97045 1.21717 0.98734 1.01939 0.95669 1.21894 1.02760 0.95065 0.99628 1.20581 0.88853 0.95101 0.91767 1.42383 1.19150 1.42882 1.32868 1.19236 1.00602 1.13884 1.03015 0.91259 1.24722 0.97979 0.98930 0.99475 1.69654 1.19397 1.28235 1.41088 0.86193 0.79657 0.77803 0.82564 1.21770 1.21854 1.20827 0.89025 0.90929 0.90502 0.84223 0.84405 0.82470 0.81704 0.92032 0.89588 0.91414 0.90228 0.89562 0.94656 0.92052 0.92414 0.93131 0.91374 0.93744 0.96441 0.96230 0.78019 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.20 8.83 37.16 0.33 -0.88 16 2 C 0.07 0.63 1.84 -27.88 -0.05 0.58 16 3 H 0.10 0.74 5.58 -51.93 -0.29 0.45 16 4 O -0.28 -3.31 9.34 -39.36 -0.37 -3.67 16 5 C 0.09 0.89 6.62 -39.07 -0.26 0.63 16 6 C -0.17 -1.35 8.36 -39.14 -0.33 -1.68 16 7 C -0.13 -0.90 10.11 -39.47 -0.40 -1.30 16 8 C 0.05 0.45 11.18 -17.54 -0.20 0.25 16 9 N -0.45 -4.82 10.36 -13.12 -0.14 -4.96 16 10 C 0.08 0.85 11.14 -17.37 -0.19 0.65 16 11 C 0.52 6.61 5.56 -10.98 -0.06 6.55 16 12 O -0.50 -8.71 14.27 -14.35 -0.20 -8.91 16 13 N -0.60 -6.51 2.40 -181.57 -0.44 -6.95 16 14 C 0.06 0.43 7.71 59.85 0.46 0.89 16 15 C 0.13 1.67 4.60 -4.04 -0.02 1.65 16 16 C -0.09 -1.39 0.60 -154.51 -0.09 -1.49 16 17 C -0.12 -2.24 6.97 37.16 0.26 -1.98 16 18 C -0.14 -2.03 7.05 37.16 0.26 -1.77 16 19 C 0.17 3.33 5.15 -4.04 -0.02 3.31 16 20 N -0.73 -18.45 5.00 -59.91 -0.30 -18.75 16 21 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 25 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 H 0.09 0.40 4.53 -51.93 -0.24 0.16 16 30 H 0.07 0.38 6.98 -51.93 -0.36 0.02 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.14 0.78 5.61 -52.49 -0.29 0.48 16 33 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.17 1.64 8.06 -52.48 -0.42 1.21 16 36 H 0.06 0.28 6.95 -51.93 -0.36 -0.08 16 37 H 0.09 0.58 6.04 -51.93 -0.31 0.27 16 38 H 0.07 0.33 6.01 -51.93 -0.31 0.01 16 39 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 40 H 0.09 1.26 7.42 -51.93 -0.39 0.87 16 41 H 0.03 0.60 6.15 -51.93 -0.32 0.28 16 42 H 0.06 1.26 6.86 -51.93 -0.36 0.91 16 43 H 0.06 1.14 7.73 -51.93 -0.40 0.74 16 44 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 45 H 0.07 1.24 6.86 -51.93 -0.36 0.89 16 46 H 0.04 0.55 5.99 -51.93 -0.31 0.24 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.38 10.22 5.36 -40.82 -0.22 10.01 16 50 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 385.47 15.07 5.81 5.81 Total: -1.00 -35.37 385.47 -7.93 -43.30 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.44 Total: 6.19 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -0.56 Total: -1.94 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: -0.15 Total: -58.45 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.57 Total: -12.59 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.37 -7.93 -43.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282320954.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.107 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds