Wall clock time and date at job start Tue Mar 31 2020 18:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47541 * 2 1 4 4 O 1.42897 * 109.47477 * 239.99692 * 2 1 3 5 5 C 1.35909 * 116.99755 * 85.32034 * 4 2 1 6 6 C 1.39140 * 120.47350 * 354.62197 * 5 4 2 7 7 C 1.38536 * 118.37229 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22456 * 0.02562 * 7 6 5 9 9 N 1.31851 * 120.88709 * 359.97423 * 8 7 6 10 10 C 1.31843 * 121.77646 * 0.02562 * 9 8 7 11 11 C 1.50706 * 109.46967 * 119.99943 * 2 1 3 12 12 O 1.21281 * 120.00259 * 119.99707 * 11 2 1 13 13 N 1.34777 * 120.00099 * 300.00340 * 11 2 1 14 14 C 1.46505 * 119.99734 * 359.97438 * 13 11 2 15 15 C 1.46500 * 120.00086 * 180.02562 * 13 11 2 16 16 C 1.52998 * 109.47480 * 89.99294 * 15 13 11 17 17 C 1.52996 * 109.47080 * 300.00034 * 16 15 13 18 18 C 1.53003 * 109.46786 * 59.99998 * 16 15 13 19 19 C 1.52998 * 109.47119 * 179.97438 * 16 15 13 20 20 N 1.46498 * 109.47376 * 179.97438 * 19 16 15 21 21 C 1.36931 * 120.00152 * 180.02562 * 20 19 16 22 22 H 1.07997 * 120.00440 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99875 * 180.02562 * 21 20 19 24 24 N 1.31614 * 120.00148 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99846 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47124 * 90.00050 * 25 23 21 27 27 H 1.48500 * 109.46924 * 209.99616 * 25 23 21 28 28 H 1.48502 * 109.47163 * 330.00107 * 25 23 21 29 29 H 1.08998 * 109.46848 * 300.00287 * 1 2 3 30 30 H 1.08998 * 109.46734 * 59.99862 * 1 2 3 31 31 H 1.08997 * 109.47541 * 179.97438 * 1 2 3 32 32 H 1.07991 * 120.81475 * 359.97438 * 6 5 4 33 33 H 1.07999 * 120.38729 * 179.97438 * 7 6 5 34 34 H 1.07996 * 119.56040 * 179.97438 * 8 7 6 35 35 H 1.08005 * 119.65342 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.46472 * 90.00697 * 14 13 11 37 37 H 1.08997 * 109.46774 * 210.00507 * 14 13 11 38 38 H 1.08992 * 109.46929 * 330.00445 * 14 13 11 39 39 H 1.08997 * 109.46794 * 209.99678 * 15 13 11 40 40 H 1.09000 * 109.46636 * 329.99132 * 15 13 11 41 41 H 1.08998 * 109.47232 * 60.00171 * 17 16 15 42 42 H 1.09003 * 109.47100 * 180.02562 * 17 16 15 43 43 H 1.08999 * 109.47420 * 299.99766 * 17 16 15 44 44 H 1.09001 * 109.46947 * 60.00561 * 18 16 15 45 45 H 1.09003 * 109.46377 * 179.97438 * 18 16 15 46 46 H 1.08997 * 109.46911 * 299.99571 * 18 16 15 47 47 H 1.09004 * 109.47389 * 300.00507 * 19 16 15 48 48 H 1.09004 * 109.47147 * 59.99694 * 19 16 15 49 49 H 0.97006 * 119.99638 * 0.02562 * 20 19 16 50 50 H 0.96996 * 119.99885 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.1189 0.0642 -2.3025 6 6 1.6754 1.3826 -2.3342 7 6 1.8108 2.0945 -3.5150 8 6 2.3771 1.4766 -4.6145 9 7 2.7874 0.2252 -4.5511 10 6 2.6766 -0.4866 -3.4468 11 6 2.0323 -0.7104 1.2305 12 8 2.7295 -1.6966 1.1193 13 7 1.7066 -0.2500 2.4546 14 6 0.8648 0.9415 2.5890 15 6 2.1954 -0.9403 3.6508 16 6 3.5430 -0.3474 4.0670 17 6 4.5507 -0.5232 2.9292 18 6 3.3725 1.1422 4.3717 19 6 4.0531 -1.0679 5.3166 20 7 5.3438 -0.5007 5.7148 21 6 5.9971 -0.9907 6.8139 22 1 5.5608 -1.7950 7.3876 23 6 7.2199 -0.4528 7.1915 24 7 7.7515 0.5277 6.4928 25 14 8.1109 -1.1207 8.6914 26 1 9.0072 -2.2313 8.2809 27 1 8.9163 -0.0381 9.3115 28 1 7.1175 -1.6237 9.6740 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2356 1.8396 -1.4602 33 1 1.4771 3.1198 -3.5761 34 1 2.4849 2.0264 -5.5378 35 1 3.0245 -1.5090 -3.4330 36 1 -0.1833 0.6438 2.6222 37 1 1.1226 1.4667 3.5086 38 1 1.0287 1.6001 1.7362 39 1 1.4774 -0.8151 4.4613 40 1 2.3168 -2.0015 3.4337 41 1 4.1871 -0.0096 2.0393 42 1 5.5110 -0.1013 3.2259 43 1 4.6722 -1.5845 2.7122 44 1 2.6547 1.2674 5.1823 45 1 4.3326 1.5645 4.6686 46 1 3.0090 1.6558 3.4817 47 1 3.3350 -0.9424 6.1270 48 1 4.1744 -2.1293 5.1000 49 1 5.7355 0.2220 5.1998 50 1 8.6060 0.9033 6.7564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282320954.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:46 Heat of formation + Delta-G solvation = -33.564354 kcal Electronic energy + Delta-G solvation = -29727.843530 eV Core-core repulsion = 25755.767431 eV Total energy + Delta-G solvation = -3972.076099 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06583 -41.15768 -39.43142 -38.42849 -36.57647 -35.11413 -33.29661 -33.09237 -32.03886 -31.00067 -28.88623 -28.19779 -27.33207 -27.17640 -25.46675 -24.78926 -24.35981 -23.37870 -20.72496 -19.85791 -19.58974 -19.10858 -18.23523 -17.79109 -17.39074 -17.21492 -16.77685 -16.55908 -16.35160 -15.69148 -15.49917 -15.40860 -15.11024 -14.85499 -14.73964 -14.57982 -14.24781 -14.15457 -13.96142 -13.85766 -13.73298 -13.39111 -13.26837 -12.97285 -12.89089 -12.77144 -12.64522 -12.50916 -12.34422 -12.23963 -12.20845 -12.09579 -11.66970 -11.64942 -11.50135 -10.94520 -10.85912 -10.66255 -10.57780 -9.63737 -9.46914 -8.97769 -7.95125 -5.22735 0.14052 0.23564 1.44556 1.45826 1.47913 1.49573 1.56042 2.39198 2.56265 2.79609 3.28457 3.38274 3.53496 3.59105 3.75677 3.78639 3.85730 3.87530 3.91623 3.95517 4.14392 4.23892 4.28849 4.34954 4.45908 4.52235 4.57142 4.64572 4.66243 4.76075 4.79412 4.81359 4.89469 4.90441 4.94775 5.02365 5.07870 5.13099 5.15153 5.17059 5.18761 5.41662 5.42833 5.48541 5.52148 5.56018 6.12933 6.27483 6.35331 6.96575 7.10300 7.33965 8.11318 8.34769 9.28728 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018527 B = 0.002346 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.952274 B =11932.215970 C =12605.215220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.121 0.879 4 O -0.307 6.307 5 C 0.068 3.932 6 C -0.166 4.166 7 C -0.119 4.119 8 C 0.045 3.955 9 N -0.475 5.475 10 C 0.048 3.952 11 C 0.507 3.493 12 O -0.563 6.563 13 N -0.597 5.597 14 C 0.050 3.950 15 C 0.137 3.863 16 C -0.076 4.076 17 C -0.108 4.108 18 C -0.127 4.127 19 C 0.162 3.838 20 N -0.739 5.739 21 C -0.243 4.243 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.973 3.027 26 H -0.291 1.291 27 H -0.294 1.294 28 H -0.267 1.267 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.170 0.830 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.154 0.846 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.063 0.937 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.031 0.969 44 H 0.069 0.931 45 H 0.029 0.971 46 H 0.075 0.925 47 H 0.033 0.967 48 H 0.007 0.993 49 H 0.376 0.624 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.711 8.289 -17.862 30.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.008 3.992 3 H 0.138 0.862 4 O -0.219 6.219 5 C 0.020 3.980 6 C -0.192 4.192 7 C -0.139 4.139 8 C -0.112 4.112 9 N -0.184 5.184 10 C -0.109 4.109 11 C 0.294 3.706 12 O -0.441 6.441 13 N -0.330 5.330 14 C -0.091 4.091 15 C 0.013 3.987 16 C -0.078 4.078 17 C -0.166 4.166 18 C -0.184 4.184 19 C 0.035 3.965 20 N -0.383 5.383 21 C -0.375 4.375 22 H 0.092 0.908 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.802 3.198 26 H -0.219 1.219 27 H -0.220 1.220 28 H -0.192 1.192 29 H 0.137 0.863 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.187 0.813 33 H 0.195 0.805 34 H 0.201 0.799 35 H 0.171 0.829 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.088 0.912 45 H 0.048 0.952 46 H 0.094 0.906 47 H 0.051 0.949 48 H 0.024 0.976 49 H 0.209 0.791 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.954 7.061 -18.454 30.287 hybrid contribution 1.122 -0.014 1.400 1.794 sum -21.832 7.047 -17.054 28.586 Atomic orbital electron populations 1.22607 0.89884 1.04584 1.06578 1.22417 0.97668 0.97068 0.82088 0.86168 1.86208 1.81448 1.37799 1.16494 1.20340 0.97528 0.92434 0.87650 1.22136 1.02743 0.92730 1.01634 1.22435 0.97110 1.02527 0.91787 1.23283 0.96677 0.90603 1.00621 1.67735 1.15886 1.09002 1.25797 1.22250 1.00215 1.01256 0.87183 1.20603 0.80070 0.84660 0.85223 1.90765 1.38518 1.28081 1.86713 1.47670 1.51017 1.30200 1.04134 1.22606 0.95209 0.85961 1.05303 1.21390 0.94096 0.96244 0.86934 1.21017 0.95401 0.97235 0.94131 1.21550 0.97979 0.99989 0.97072 1.21817 1.01334 0.93566 1.01696 1.20753 0.87135 0.94575 0.94067 1.42578 1.20795 1.42713 1.32185 1.19652 1.00842 1.13478 1.03482 0.90758 1.25555 0.99061 0.99678 1.02645 1.69817 1.19648 1.29805 1.42900 0.85138 0.78414 0.76830 0.79375 1.21858 1.22048 1.19213 0.86262 0.89192 0.92113 0.81280 0.80498 0.79942 0.82863 0.89027 0.89058 0.88872 0.87015 0.91803 0.93445 0.95322 0.94948 0.91191 0.95168 0.90619 0.94902 0.97553 0.79097 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.83 71.98 0.64 -1.04 16 2 C 0.07 1.14 1.84 29.85 0.05 1.19 16 3 H 0.12 1.39 5.58 -2.39 -0.01 1.38 16 4 O -0.31 -7.41 9.34 -73.49 -0.69 -8.10 16 5 C 0.07 1.40 6.62 22.60 0.15 1.55 16 6 C -0.17 -2.13 8.36 22.56 0.19 -1.95 16 7 C -0.12 -1.23 10.11 22.34 0.23 -1.00 16 8 C 0.05 0.66 11.18 84.69 0.95 1.61 16 9 N -0.47 -10.36 10.36 -195.43 -2.02 -12.38 16 10 C 0.05 1.11 11.14 84.80 0.94 2.06 16 11 C 0.51 12.52 5.56 87.66 0.49 13.01 16 12 O -0.56 -20.35 14.27 16.00 0.23 -20.12 16 13 N -0.60 -11.39 2.40 -846.76 -2.03 -13.42 16 14 C 0.05 0.41 7.71 127.77 0.98 1.39 16 15 C 0.14 3.34 4.60 86.38 0.40 3.74 16 16 C -0.08 -2.44 0.60 -52.18 -0.03 -2.47 16 17 C -0.11 -4.12 6.97 71.98 0.50 -3.62 16 18 C -0.13 -3.56 7.05 71.98 0.51 -3.06 16 19 C 0.16 6.58 5.15 86.38 0.44 7.03 16 20 N -0.74 -38.39 5.00 -343.45 -1.72 -40.11 16 21 C -0.24 -13.88 9.99 84.04 0.84 -13.04 16 22 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 24 N -0.97 -60.68 13.06 21.65 0.28 -60.39 16 25 Si 0.97 47.16 29.55 68.60 2.03 49.19 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 27 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 29 H 0.12 0.40 4.53 -2.39 -0.01 0.39 16 30 H 0.09 0.56 6.98 -2.39 -0.02 0.55 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.17 1.04 5.61 -2.92 -0.02 1.02 16 33 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 34 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 36 H 0.09 0.29 6.95 -2.39 -0.02 0.27 16 37 H 0.09 0.73 6.04 -2.39 -0.01 0.72 16 38 H 0.09 0.34 6.01 -2.39 -0.01 0.32 16 39 H 0.11 2.05 8.07 -2.39 -0.02 2.03 16 40 H 0.06 1.88 7.42 -2.39 -0.02 1.86 16 41 H 0.05 1.64 6.15 -2.39 -0.01 1.63 16 42 H 0.03 1.24 6.86 -2.39 -0.02 1.22 16 43 H 0.03 1.36 7.73 -2.39 -0.02 1.34 16 44 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 45 H 0.03 1.08 6.86 -2.39 -0.02 1.07 16 46 H 0.08 1.63 5.99 -2.39 -0.01 1.61 16 47 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 49 H 0.38 20.76 5.36 -92.70 -0.50 20.26 16 50 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -83.10 385.47 4.28 -78.81 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.46 Total: 25.20 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 7.74 Total: 1.31 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -5.49 Total: -126.30 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.46 Total: -28.22 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.19 kcal Total: -83.10 4.28 -78.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282320954.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.250 kcal (2) G-P(sol) polarization free energy of solvation -83.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds