Wall clock time and date at job start Tue Mar 31 2020 19:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47098 * 2 1 4 4 C 1.36941 * 119.99758 * 272.70942 * 3 2 1 5 5 H 1.08001 * 119.99713 * 38.82671 * 4 3 2 6 6 C 1.38815 * 120.00154 * 218.82667 * 4 3 2 7 7 N 1.31618 * 119.99734 * 20.29096 * 6 4 3 8 8 Si 1.86803 * 119.99973 * 200.29780 * 6 4 3 9 9 H 1.48506 * 109.47235 * 59.99449 * 8 6 4 10 10 H 1.48494 * 109.47185 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47039 * 299.99739 * 8 6 4 12 12 C 1.46494 * 120.00444 * 92.71600 * 3 2 1 13 13 C 1.53004 * 109.46915 * 269.99823 * 12 3 2 14 14 C 1.53006 * 109.47112 * 179.97438 * 13 12 3 15 15 N 1.46496 * 109.47084 * 179.97438 * 14 13 12 16 16 C 1.34775 * 120.00263 * 180.02562 * 15 14 13 17 17 O 1.21554 * 119.99630 * 359.97438 * 16 15 14 18 18 C 1.47924 * 120.00340 * 180.02562 * 16 15 14 19 19 C 1.39465 * 119.65804 * 179.97438 * 18 16 15 20 20 C 1.38316 * 119.13458 * 179.97438 * 19 18 16 21 21 C 1.39230 * 118.44332 * 0.02562 * 20 19 18 22 22 O 1.35724 * 120.38286 * 179.97438 * 21 20 19 23 23 C 1.42903 * 117.00126 * 5.12748 * 22 21 20 24 24 C 1.52995 * 109.47101 * 272.85603 * 23 22 21 25 25 C 1.52998 * 109.47370 * 152.85342 * 23 22 21 26 26 C 1.39236 * 119.23733 * 0.25545 * 21 20 19 27 27 N 1.31380 * 120.80036 * 359.48964 * 26 21 20 28 28 H 1.08999 * 109.47168 * 60.00692 * 1 2 3 29 29 H 1.09003 * 109.47285 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47212 * 300.00629 * 1 2 3 31 31 H 1.08996 * 109.47212 * 239.99371 * 2 1 3 32 32 H 1.09006 * 109.46631 * 119.99983 * 2 1 3 33 33 H 0.97003 * 119.99309 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47538 * 149.99892 * 12 3 2 35 35 H 1.09005 * 109.47198 * 29.99681 * 12 3 2 36 36 H 1.09000 * 109.46962 * 59.99715 * 13 12 3 37 37 H 1.08993 * 109.47048 * 299.99471 * 13 12 3 38 38 H 1.08997 * 109.46907 * 59.99727 * 14 13 12 39 39 H 1.08996 * 109.47167 * 300.00272 * 14 13 12 40 40 H 0.97007 * 119.99769 * 0.02562 * 15 14 13 41 41 H 1.08008 * 120.43270 * 0.02562 * 19 18 16 42 42 H 1.08004 * 120.78389 * 180.02562 * 20 19 18 43 43 H 1.09008 * 109.46619 * 32.85077 * 23 22 21 44 44 H 1.08998 * 109.47619 * 180.02562 * 24 23 22 45 45 H 1.09009 * 109.46999 * 299.99821 * 24 23 22 46 46 H 1.09002 * 109.47333 * 59.99422 * 24 23 22 47 47 H 1.08998 * 109.47148 * 180.02562 * 25 23 22 48 48 H 1.09002 * 109.46720 * 299.99625 * 25 23 22 49 49 H 1.08997 * 109.47098 * 59.99620 * 25 23 22 50 50 H 1.07994 * 119.59679 * 179.75351 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1937 2.0453 -1.1846 5 1 1.4840 1.9133 -1.9879 6 6 3.2836 2.8884 -1.3530 7 7 4.3398 2.7612 -0.5781 8 14 3.2511 4.2034 -2.6793 9 1 2.1166 5.1289 -2.4311 10 1 4.5256 4.9650 -2.6526 11 1 3.0850 3.5621 -4.0083 12 6 2.3192 2.0518 1.2672 13 6 1.0654 2.7656 1.7766 14 6 1.3794 3.4655 3.1005 15 7 0.1791 4.1495 3.5880 16 6 0.2193 4.8382 4.7458 17 8 1.2513 4.8914 5.3857 18 6 -0.9929 5.5283 5.2383 19 6 -0.9434 6.2385 6.4376 20 6 -2.0830 6.8802 6.8877 21 6 -3.2415 6.7903 6.1206 22 8 -4.3822 7.4042 6.5255 23 6 -4.2989 8.2228 7.6938 24 6 -4.5210 7.3602 8.9378 25 6 -5.3711 9.3124 7.6307 26 6 -3.2179 6.0583 4.9364 27 7 -2.1171 5.4644 4.5344 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 5.1013 3.3505 -0.6955 34 1 3.1147 2.7807 1.1127 35 1 2.6406 1.3133 2.0017 36 1 0.2699 2.0367 1.9312 37 1 0.7440 3.5040 1.0422 38 1 2.1751 4.1943 2.9463 39 1 1.7007 2.7268 3.8348 40 1 -0.6446 4.1066 3.0774 41 1 -0.0269 6.2875 7.0070 42 1 -2.0746 7.4380 7.8125 43 1 -3.3132 8.6854 7.7438 44 1 -4.4580 7.9846 9.8290 45 1 -5.5068 6.8975 8.8878 46 1 -3.7572 6.5839 8.9828 47 1 -5.3073 9.9370 8.5217 48 1 -5.2128 9.9270 6.7445 49 1 -6.3568 8.8498 7.5807 50 1 -4.1142 5.9814 4.3390 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316908703.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:28 Heat of formation + Delta-G solvation = -30.684197 kcal Electronic energy + Delta-G solvation = -28135.124302 eV Core-core repulsion = 24163.173096 eV Total energy + Delta-G solvation = -3971.951206 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.22610 -39.68661 -38.36254 -36.38278 -34.76378 -33.90053 -32.66684 -31.81875 -31.42451 -30.36637 -28.45633 -27.89000 -25.69420 -24.71112 -23.99369 -23.23396 -21.93689 -20.96495 -20.56934 -19.98264 -18.90701 -17.84679 -17.23550 -16.62643 -16.10388 -15.63950 -15.43944 -15.23492 -14.91726 -14.84507 -14.55162 -14.19514 -14.07232 -13.77097 -13.60498 -13.34333 -13.23863 -12.95524 -12.84918 -12.71008 -12.52481 -12.42715 -12.28204 -11.58368 -11.53840 -11.37245 -11.34152 -11.10707 -10.97300 -10.70019 -10.55570 -10.42512 -10.28372 -10.19931 -10.00801 -9.76565 -9.58752 -9.46080 -8.92221 -8.65262 -8.42542 -6.49625 -5.73623 -3.34640 0.46735 0.82699 2.51856 2.70791 3.28304 3.39887 3.45790 3.47643 3.69129 4.02268 4.08195 4.22564 4.27235 4.40286 4.50595 4.51745 4.74508 4.78207 4.95635 5.10141 5.11844 5.17347 5.31312 5.41752 5.44990 5.48110 5.55017 5.61076 5.64504 5.72480 5.89022 5.96230 6.04457 6.15543 6.34593 6.41409 6.49215 6.53909 6.64423 6.75092 6.82444 6.84008 6.97129 7.16406 7.23822 7.40672 7.72875 7.78567 7.86858 8.33995 8.58407 9.25098 9.86774 10.46600 11.25605 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.001991 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.828881 B =14058.934037 C =14311.767473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.260 4.260 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.152 3.848 13 C -0.147 4.147 14 C 0.119 3.881 15 N -0.703 5.703 16 C 0.568 3.432 17 O -0.542 6.542 18 C 0.041 3.959 19 C -0.068 4.068 20 C -0.179 4.179 21 C 0.103 3.897 22 O -0.300 6.300 23 C 0.072 3.928 24 C -0.181 4.181 25 C -0.150 4.150 26 C 0.075 3.925 27 N -0.417 5.417 28 H 0.048 0.952 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.255 0.745 34 H 0.094 0.906 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.409 0.591 41 H 0.152 0.848 42 H 0.147 0.853 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.714 10.672 19.158 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.390 4.390 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.025 3.975 13 C -0.188 4.188 14 C -0.005 4.005 15 N -0.353 5.353 16 C 0.352 3.648 17 O -0.419 6.419 18 C -0.097 4.097 19 C -0.089 4.089 20 C -0.205 4.205 21 C 0.054 3.946 22 O -0.212 6.212 23 C 0.016 3.984 24 C -0.238 4.238 25 C -0.207 4.207 26 C -0.087 4.087 27 N -0.129 5.129 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.245 0.755 41 H 0.169 0.831 42 H 0.164 0.836 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.916 10.271 18.722 27.875 hybrid contribution -0.379 1.325 0.094 1.381 sum -18.295 11.596 18.815 28.691 Atomic orbital electron populations 1.22392 1.00212 0.98870 1.01156 1.20849 0.91604 0.87429 0.98719 1.43709 1.76423 1.08162 1.02117 1.18933 1.04314 1.22779 0.92998 0.92468 1.25228 0.94304 1.01263 0.97921 1.69985 1.04001 1.38037 1.40871 0.86486 0.76869 0.82185 0.81911 1.20885 1.21635 1.20738 1.20776 0.94405 0.96377 0.85925 1.22560 1.02521 0.99840 0.93855 1.21560 0.86358 0.96008 0.96530 1.46039 1.15684 1.50955 1.22652 1.17741 0.86398 0.79068 0.81583 1.90786 1.31130 1.62456 1.57542 1.21163 0.93087 1.01182 0.94282 1.21963 0.99061 0.92886 0.94981 1.21727 0.92748 1.04045 1.01973 1.20436 0.86123 0.93514 0.94558 1.86125 1.30283 1.59987 1.44762 1.22585 1.00922 0.91125 0.83737 1.22382 1.03610 1.00745 0.97078 1.21874 0.98619 0.97001 1.03182 1.22258 0.97159 0.96101 0.93163 1.67612 0.98223 1.15995 1.31061 0.93304 0.94676 0.93701 0.93765 0.94972 0.93484 0.88867 0.95665 0.92901 0.91610 0.91298 0.91770 0.75522 0.83067 0.83591 0.90566 0.90650 0.91117 0.91790 0.90277 0.91441 0.91208 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 10.23 37.16 0.38 -2.67 16 2 C 0.14 3.00 6.43 -4.04 -0.03 2.97 16 3 N -0.58 -14.42 2.42 -173.24 -0.42 -14.84 16 4 C -0.26 -7.08 9.46 -15.06 -0.14 -7.22 16 5 H 0.06 1.56 7.91 -52.49 -0.42 1.14 16 6 C 0.01 0.37 4.97 -17.43 -0.09 0.28 16 7 N -0.89 -25.55 11.49 55.49 0.64 -24.91 16 8 Si 0.90 21.66 29.60 -169.99 -5.03 16.62 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.15 3.51 5.33 -4.04 -0.02 3.49 16 13 C -0.15 -2.83 5.65 -26.73 -0.15 -2.98 16 14 C 0.12 2.09 5.67 -4.04 -0.02 2.07 16 15 N -0.70 -11.21 5.54 -61.23 -0.34 -11.55 16 16 C 0.57 9.24 7.80 -12.29 -0.10 9.14 16 17 O -0.54 -10.21 16.31 5.32 0.09 -10.13 16 18 C 0.04 0.55 6.74 -83.03 -0.56 -0.01 16 19 C -0.07 -0.76 9.62 -39.10 -0.38 -1.13 16 20 C -0.18 -1.56 8.44 -39.18 -0.33 -1.89 16 21 C 0.10 0.94 6.65 -38.84 -0.26 0.69 16 22 O -0.30 -2.42 9.79 -18.88 -0.18 -2.60 16 23 C 0.07 0.39 2.84 -26.73 -0.08 0.31 16 24 C -0.18 -0.81 9.25 37.16 0.34 -0.46 16 25 C -0.15 -0.59 9.56 37.16 0.36 -0.24 16 26 C 0.08 0.77 11.14 -17.37 -0.19 0.58 16 27 N -0.42 -5.26 9.52 -9.68 -0.09 -5.35 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.04 0.80 6.45 -51.93 -0.33 0.46 16 31 H 0.04 0.97 8.06 -51.93 -0.42 0.55 16 32 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 33 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.09 2.45 5.57 -51.93 -0.29 2.16 16 35 H 0.02 0.56 7.87 -51.93 -0.41 0.15 16 36 H 0.05 0.96 6.45 -51.93 -0.33 0.63 16 37 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.41 5.99 7.79 -40.82 -0.32 5.67 16 41 H 0.15 1.58 7.63 -52.48 -0.40 1.18 16 42 H 0.15 0.86 5.68 -52.48 -0.30 0.57 16 43 H 0.08 0.36 6.18 -51.92 -0.32 0.03 16 44 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 45 H 0.07 0.34 8.14 -51.92 -0.42 -0.09 16 46 H 0.06 0.33 7.21 -51.93 -0.37 -0.04 16 47 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 408.25 15.07 6.15 6.15 Total: -1.00 -31.68 408.25 -8.56 -40.24 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.11 Total: 3.44 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.26 Total: 2.93 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.21 Total: -56.65 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.10 Total: -12.73 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.68 -8.56 -40.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316908703.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.556 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds