Wall clock time and date at job start Tue Mar 31 2020 18:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46989 * 2 1 4 4 O 1.42898 * 109.47249 * 120.00207 * 2 1 3 5 5 C 1.42899 * 113.99860 * 269.99863 * 4 2 1 6 6 C 1.50702 * 109.46961 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78614 * 269.71722 * 6 5 4 8 8 C 1.38208 * 119.15948 * 179.80304 * 7 6 5 9 9 N 1.31871 * 120.76453 * 0.48325 * 8 7 6 10 10 C 1.31872 * 121.72383 * 359.74538 * 9 8 7 11 11 C 1.38209 * 120.76694 * 0.02562 * 10 9 8 12 12 C 1.50703 * 109.46670 * 239.99961 * 2 1 3 13 13 O 1.21283 * 120.00247 * 248.72635 * 12 2 1 14 14 N 1.34784 * 119.99773 * 68.73027 * 12 2 1 15 15 C 1.46499 * 120.00055 * 4.48575 * 14 12 2 16 16 C 1.46494 * 119.99757 * 184.48676 * 14 12 2 17 17 C 1.53003 * 109.46995 * 89.99758 * 16 14 12 18 18 C 1.53000 * 109.47025 * 179.97438 * 17 16 14 19 19 N 1.46498 * 109.47150 * 180.02562 * 18 17 16 20 20 C 1.46499 * 120.00259 * 89.99804 * 19 18 17 21 21 C 1.36939 * 120.00135 * 269.99927 * 19 18 17 22 22 H 1.07997 * 119.99978 * 145.75474 * 21 19 18 23 23 C 1.38818 * 119.99702 * 325.75218 * 21 19 18 24 24 N 1.31619 * 119.99732 * 156.24121 * 23 21 19 25 25 Si 1.86793 * 120.00109 * 336.24527 * 23 21 19 26 26 H 1.48503 * 109.47018 * 95.34708 * 25 23 21 27 27 H 1.48508 * 109.46969 * 215.34176 * 25 23 21 28 28 H 1.48494 * 109.47196 * 335.34446 * 25 23 21 29 29 H 1.08997 * 109.47416 * 66.63982 * 1 2 3 30 30 H 1.09002 * 109.46982 * 186.64478 * 1 2 3 31 31 H 1.09002 * 109.46353 * 306.64373 * 1 2 3 32 32 H 1.08999 * 109.47171 * 299.99738 * 5 4 2 33 33 H 1.09000 * 109.47154 * 59.99953 * 5 4 2 34 34 H 1.08000 * 120.41919 * 0.02562 * 7 6 5 35 35 H 1.07996 * 119.61638 * 180.20971 * 8 7 6 36 36 H 1.08007 * 119.61530 * 180.02562 * 10 9 8 37 37 H 1.08001 * 120.41724 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.46993 * 86.33992 * 15 14 12 39 39 H 1.09001 * 109.46745 * 206.33867 * 15 14 12 40 40 H 1.08995 * 109.47086 * 326.33835 * 15 14 12 41 41 H 1.09000 * 109.47309 * 209.99615 * 16 14 12 42 42 H 1.09000 * 109.47272 * 329.99997 * 16 14 12 43 43 H 1.08995 * 109.47434 * 299.99923 * 17 16 14 44 44 H 1.09003 * 109.47231 * 60.00422 * 17 16 14 45 45 H 1.09000 * 109.47320 * 299.99882 * 18 17 16 46 46 H 1.09000 * 109.47231 * 60.00245 * 18 17 16 47 47 H 1.09007 * 109.47160 * 95.02118 * 20 19 18 48 48 H 1.08999 * 109.47570 * 215.02271 * 20 19 18 49 49 H 1.08997 * 109.47084 * 335.03144 * 20 19 18 50 50 H 0.96991 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 2.7016 -0.6283 3.4609 7 6 1.8150 -1.2044 4.3579 8 6 2.3115 -1.9450 5.4139 9 7 3.6109 -2.0984 5.5782 10 6 4.4831 -1.5611 4.7477 11 6 4.0605 -0.8113 3.6664 12 6 2.0323 -0.7104 -1.2305 13 8 2.5937 -1.7805 -1.1263 14 7 1.8576 -0.1566 -2.4468 15 6 1.2686 1.1794 -2.5656 16 6 2.2568 -0.8908 -3.6500 17 6 1.0804 -1.7333 -4.1472 18 6 1.4972 -2.4996 -5.4042 19 7 0.3706 -3.3059 -5.8806 20 6 -0.5820 -2.7397 -6.8388 21 6 0.2079 -4.5888 -5.4303 22 1 -0.7849 -4.9907 -5.2917 23 6 1.3192 -5.3728 -5.1520 24 7 1.2197 -6.3807 -4.3113 25 14 2.9558 -4.9973 -5.9704 26 1 3.7775 -4.1508 -5.0685 27 1 3.6737 -6.2675 -6.2472 28 1 2.7173 -4.2754 -7.2459 29 1 -0.3634 0.4075 -0.9434 30 1 -0.3633 -1.0208 0.1189 31 1 -0.3632 0.6134 0.8246 32 1 2.9321 0.9512 2.0450 33 1 1.2539 0.6546 2.5588 34 1 0.7499 -1.0789 4.2310 35 1 1.6275 -2.3999 6.1150 36 1 5.5399 -1.7088 4.9145 37 1 4.7797 -0.3735 2.9900 38 1 2.0522 1.9315 -2.4741 39 1 0.7827 1.2772 -3.5365 40 1 0.5325 1.3236 -1.7748 41 1 2.5512 -0.1841 -4.4260 42 1 3.0976 -1.5436 -3.4152 43 1 0.7861 -2.4400 -3.3713 44 1 0.2397 -1.0806 -4.3821 45 1 1.7912 -1.7927 -6.1800 46 1 2.3381 -3.1523 -5.1698 47 1 -0.2903 -3.0211 -7.8507 48 1 -1.5804 -3.1233 -6.6285 49 1 -0.5841 -1.6533 -6.7503 50 1 1.9960 -6.9287 -4.1171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327264540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:52 Heat of formation + Delta-G solvation = -3.036286 kcal Electronic energy + Delta-G solvation = -29018.882655 eV Core-core repulsion = 25048.130352 eV Total energy + Delta-G solvation = -3970.752303 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.51419 -40.07809 -37.97796 -36.38859 -35.40816 -33.77418 -32.32615 -31.47785 -31.46296 -30.50952 -27.30712 -27.03889 -26.38616 -25.61915 -23.76659 -23.65086 -22.29662 -21.83057 -20.62985 -19.31770 -17.77049 -17.12206 -16.80948 -16.65773 -16.57830 -15.88053 -15.69310 -15.52541 -15.35428 -15.01987 -14.42693 -14.07688 -13.95432 -13.82581 -13.65524 -13.47730 -13.23135 -13.18023 -12.95055 -12.64756 -12.55520 -12.30147 -12.03449 -11.99364 -11.81232 -11.71700 -11.45473 -11.28459 -11.05684 -10.79940 -10.39891 -10.35947 -10.19698 -10.02141 -9.74925 -9.69762 -9.42040 -9.39701 -9.38538 -8.57773 -8.41449 -6.80167 -5.91202 -3.28985 0.85376 0.88752 2.66328 2.75329 3.38703 3.42987 3.52281 3.57128 3.79407 4.21251 4.26991 4.36983 4.44824 4.60384 4.61712 4.73042 4.76754 4.84869 4.90751 4.97026 5.02864 5.03314 5.20509 5.28892 5.32699 5.34980 5.43879 5.45736 5.51309 5.51981 5.67192 5.79079 5.91938 5.95214 6.01620 6.04424 6.15546 6.25814 6.36105 6.41794 6.53593 6.65497 6.71474 6.80409 6.83955 7.10169 7.42509 7.70632 8.10928 8.29413 8.42811 9.05064 9.79588 10.17912 11.24698 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.002623 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.038975 B =10673.402415 C =11788.790508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 H 0.083 0.917 4 O -0.347 6.347 5 C 0.099 3.901 6 C -0.044 4.044 7 C -0.151 4.151 8 C 0.096 3.904 9 N -0.482 5.482 10 C 0.096 3.904 11 C -0.150 4.150 12 C 0.509 3.491 13 O -0.504 6.504 14 N -0.614 5.614 15 C 0.065 3.935 16 C 0.115 3.885 17 C -0.146 4.146 18 C 0.141 3.859 19 N -0.613 5.613 20 C 0.127 3.873 21 C -0.272 4.272 22 H 0.078 0.922 23 C 0.035 3.965 24 N -0.896 5.896 25 Si 0.877 3.123 26 H -0.283 1.283 27 H -0.302 1.302 28 H -0.272 1.272 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.137 0.863 35 H 0.158 0.842 36 H 0.158 0.842 37 H 0.136 0.864 38 H 0.054 0.946 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.037 0.963 46 H 0.054 0.946 47 H 0.007 0.993 48 H 0.037 0.963 49 H 0.029 0.971 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.046 22.545 14.043 26.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.013 3.987 3 H 0.101 0.899 4 O -0.265 6.265 5 C 0.022 3.978 6 C -0.052 4.052 7 C -0.170 4.170 8 C -0.061 4.061 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.295 3.705 13 O -0.376 6.376 14 N -0.350 5.350 15 C -0.078 4.078 16 C -0.008 4.008 17 C -0.187 4.187 18 C 0.015 3.985 19 N -0.337 5.337 20 C -0.018 4.018 21 C -0.401 4.401 22 H 0.096 0.904 23 C -0.165 4.165 24 N -0.537 5.537 25 Si 0.708 3.292 26 H -0.211 1.211 27 H -0.230 1.230 28 H -0.197 1.197 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.155 0.845 35 H 0.175 0.825 36 H 0.175 0.825 37 H 0.154 0.846 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.056 0.944 46 H 0.072 0.928 47 H 0.026 0.974 48 H 0.056 0.944 49 H 0.048 0.952 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.746 21.105 14.864 25.873 hybrid contribution 0.507 0.941 -1.214 1.617 sum 2.253 22.046 13.650 26.028 Atomic orbital electron populations 1.22409 0.93363 1.04598 1.03214 1.21920 0.95320 0.95916 0.85556 0.89909 1.88180 1.86541 1.33351 1.18400 1.21407 0.99978 0.91641 0.84774 1.19953 0.93713 0.96905 0.94667 1.22091 1.01026 0.98193 0.95739 1.22786 0.91977 0.95210 0.96126 1.67673 1.03409 1.19412 1.28682 1.22787 0.99752 0.93014 0.90497 1.22102 0.95850 0.99958 0.99040 1.20287 0.79988 0.86211 0.84037 1.90798 1.40128 1.21061 1.85662 1.47825 1.63203 1.17889 1.06100 1.22058 0.98390 0.83443 1.03868 1.21625 0.99158 0.95280 0.84692 1.22489 0.96670 0.98645 1.00918 1.21084 0.91581 0.93163 0.92711 1.44039 1.29389 1.11901 1.48328 1.21030 0.93614 0.95308 0.91858 1.18754 0.93963 0.87478 1.39881 0.90409 1.25374 0.97924 0.95692 0.97545 1.69877 1.30648 1.20800 1.32410 0.86934 0.85065 0.76266 0.80929 1.21126 1.23002 1.19685 0.89989 0.90400 0.91337 0.91881 0.91705 0.84544 0.82502 0.82512 0.84599 0.92750 0.90448 0.90584 0.90932 0.89893 0.90794 0.92896 0.94429 0.92832 0.97439 0.94420 0.95186 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.69 9.12 37.16 0.34 -1.35 16 2 C 0.07 0.85 2.32 -27.88 -0.06 0.79 16 3 H 0.08 0.65 7.35 -51.93 -0.38 0.27 16 4 O -0.35 -4.68 9.52 -54.99 -0.52 -5.20 16 5 C 0.10 0.89 5.92 36.01 0.21 1.11 16 6 C -0.04 -0.45 5.55 -104.32 -0.58 -1.03 16 7 C -0.15 -1.43 9.82 -39.44 -0.39 -1.82 16 8 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 9 N -0.48 -5.57 10.36 -13.25 -0.14 -5.71 16 10 C 0.10 0.98 11.18 -17.54 -0.20 0.78 16 11 C -0.15 -1.48 9.82 -39.44 -0.39 -1.87 16 12 C 0.51 8.20 7.03 -10.98 -0.08 8.13 16 13 O -0.50 -11.09 16.08 -14.20 -0.23 -11.32 16 14 N -0.61 -8.44 2.87 -181.57 -0.52 -8.96 16 15 C 0.07 0.54 9.81 59.85 0.59 1.13 16 16 C 0.11 1.85 5.42 -4.04 -0.02 1.83 16 17 C -0.15 -2.82 5.86 -26.73 -0.16 -2.98 16 18 C 0.14 3.12 4.50 -4.04 -0.02 3.10 16 19 N -0.61 -15.15 2.54 -181.12 -0.46 -15.61 16 20 C 0.13 2.58 10.69 59.85 0.64 3.22 16 21 C -0.27 -7.97 9.96 -15.06 -0.15 -8.12 16 22 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 23 C 0.04 1.07 5.30 -17.43 -0.09 0.98 16 24 N -0.90 -28.77 13.97 55.49 0.78 -28.00 16 25 Si 0.88 23.31 24.99 -169.99 -4.25 19.06 16 26 H -0.28 -7.36 6.65 56.52 0.38 -6.98 16 27 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 28 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 29 H 0.08 0.68 5.46 -51.93 -0.28 0.39 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.46 8.03 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.04 -51.93 -0.42 0.04 16 33 H 0.06 0.43 7.99 -51.93 -0.42 0.02 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.16 1.12 8.06 -52.49 -0.42 0.69 16 36 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.59 8.04 -51.93 -0.42 0.17 16 40 H 0.08 0.50 4.30 -51.93 -0.22 0.27 16 41 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.08 1.58 7.36 -51.93 -0.38 1.19 16 43 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 46 H 0.05 1.33 2.93 -51.93 -0.15 1.18 16 47 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 48 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 49 H 0.03 0.51 8.03 -51.93 -0.42 0.09 16 50 H 0.26 8.05 8.31 -40.82 -0.34 7.71 16 LS Contribution 405.78 15.07 6.12 6.12 Total: -1.00 -39.08 405.78 -7.93 -47.01 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.16 Total: -2.03 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.55 Total: 4.64 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.34 Total: -58.27 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.75 Total: -16.52 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.25 Total: 19.06 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -39.08 -7.93 -47.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327264540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.977 kcal (2) G-P(sol) polarization free energy of solvation -39.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds