Wall clock time and date at job start Tue Mar 31 2020 18:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46989 * 2 1 4 4 O 1.42898 * 109.47249 * 120.00207 * 2 1 3 5 5 C 1.42899 * 113.99860 * 269.99863 * 4 2 1 6 6 C 1.50702 * 109.46961 * 180.02562 * 5 4 2 7 7 C 1.38653 * 120.78614 * 269.71722 * 6 5 4 8 8 C 1.38208 * 119.15948 * 179.80304 * 7 6 5 9 9 N 1.31871 * 120.76453 * 0.48325 * 8 7 6 10 10 C 1.31872 * 121.72383 * 359.74538 * 9 8 7 11 11 C 1.38209 * 120.76694 * 0.02562 * 10 9 8 12 12 C 1.50703 * 109.46670 * 239.99961 * 2 1 3 13 13 O 1.21283 * 120.00247 * 248.72635 * 12 2 1 14 14 N 1.34784 * 119.99773 * 68.73027 * 12 2 1 15 15 C 1.46499 * 120.00055 * 4.48575 * 14 12 2 16 16 C 1.46494 * 119.99757 * 184.48676 * 14 12 2 17 17 C 1.53003 * 109.46995 * 89.99758 * 16 14 12 18 18 C 1.53000 * 109.47025 * 179.97438 * 17 16 14 19 19 N 1.46498 * 109.47150 * 180.02562 * 18 17 16 20 20 C 1.46499 * 120.00259 * 89.99804 * 19 18 17 21 21 C 1.36939 * 120.00135 * 269.99927 * 19 18 17 22 22 H 1.07997 * 119.99978 * 145.75474 * 21 19 18 23 23 C 1.38818 * 119.99702 * 325.75218 * 21 19 18 24 24 N 1.31619 * 119.99732 * 156.24121 * 23 21 19 25 25 Si 1.86793 * 120.00109 * 336.24527 * 23 21 19 26 26 H 1.48503 * 109.47018 * 95.34708 * 25 23 21 27 27 H 1.48508 * 109.46969 * 215.34176 * 25 23 21 28 28 H 1.48494 * 109.47196 * 335.34446 * 25 23 21 29 29 H 1.08997 * 109.47416 * 66.63982 * 1 2 3 30 30 H 1.09002 * 109.46982 * 186.64478 * 1 2 3 31 31 H 1.09002 * 109.46353 * 306.64373 * 1 2 3 32 32 H 1.08999 * 109.47171 * 299.99738 * 5 4 2 33 33 H 1.09000 * 109.47154 * 59.99953 * 5 4 2 34 34 H 1.08000 * 120.41919 * 0.02562 * 7 6 5 35 35 H 1.07996 * 119.61638 * 180.20971 * 8 7 6 36 36 H 1.08007 * 119.61530 * 180.02562 * 10 9 8 37 37 H 1.08001 * 120.41724 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.46993 * 86.33992 * 15 14 12 39 39 H 1.09001 * 109.46745 * 206.33867 * 15 14 12 40 40 H 1.08995 * 109.47086 * 326.33835 * 15 14 12 41 41 H 1.09000 * 109.47309 * 209.99615 * 16 14 12 42 42 H 1.09000 * 109.47272 * 329.99997 * 16 14 12 43 43 H 1.08995 * 109.47434 * 299.99923 * 17 16 14 44 44 H 1.09003 * 109.47231 * 60.00422 * 17 16 14 45 45 H 1.09000 * 109.47320 * 299.99882 * 18 17 16 46 46 H 1.09000 * 109.47231 * 60.00245 * 18 17 16 47 47 H 1.09007 * 109.47160 * 95.02118 * 20 19 18 48 48 H 1.08999 * 109.47570 * 215.02271 * 20 19 18 49 49 H 1.08997 * 109.47084 * 335.03144 * 20 19 18 50 50 H 0.96991 * 120.00033 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1829 2.2940 6 6 2.7016 -0.6283 3.4609 7 6 1.8150 -1.2044 4.3579 8 6 2.3115 -1.9450 5.4139 9 7 3.6109 -2.0984 5.5782 10 6 4.4831 -1.5611 4.7477 11 6 4.0605 -0.8113 3.6664 12 6 2.0323 -0.7104 -1.2305 13 8 2.5937 -1.7805 -1.1263 14 7 1.8576 -0.1566 -2.4468 15 6 1.2686 1.1794 -2.5656 16 6 2.2568 -0.8908 -3.6500 17 6 1.0804 -1.7333 -4.1472 18 6 1.4972 -2.4996 -5.4042 19 7 0.3706 -3.3059 -5.8806 20 6 -0.5820 -2.7397 -6.8388 21 6 0.2079 -4.5888 -5.4303 22 1 -0.7849 -4.9907 -5.2917 23 6 1.3192 -5.3728 -5.1520 24 7 1.2197 -6.3807 -4.3113 25 14 2.9558 -4.9973 -5.9704 26 1 3.7775 -4.1508 -5.0685 27 1 3.6737 -6.2675 -6.2472 28 1 2.7173 -4.2754 -7.2459 29 1 -0.3634 0.4075 -0.9434 30 1 -0.3633 -1.0208 0.1189 31 1 -0.3632 0.6134 0.8246 32 1 2.9321 0.9512 2.0450 33 1 1.2539 0.6546 2.5588 34 1 0.7499 -1.0789 4.2310 35 1 1.6275 -2.3999 6.1150 36 1 5.5399 -1.7088 4.9145 37 1 4.7797 -0.3735 2.9900 38 1 2.0522 1.9315 -2.4741 39 1 0.7827 1.2772 -3.5365 40 1 0.5325 1.3236 -1.7748 41 1 2.5512 -0.1841 -4.4260 42 1 3.0976 -1.5436 -3.4152 43 1 0.7861 -2.4400 -3.3713 44 1 0.2397 -1.0806 -4.3821 45 1 1.7912 -1.7927 -6.1800 46 1 2.3381 -3.1523 -5.1698 47 1 -0.2903 -3.0211 -7.8507 48 1 -1.5804 -3.1233 -6.6285 49 1 -0.5841 -1.6533 -6.7503 50 1 1.9960 -6.9287 -4.1171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327264540.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:52 Heat of formation + Delta-G solvation = -30.626045 kcal Electronic energy + Delta-G solvation = -29020.079036 eV Core-core repulsion = 25048.130352 eV Total energy + Delta-G solvation = -3971.948684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.39224 -41.02845 -38.92689 -38.10837 -36.76719 -34.61228 -33.99434 -33.15754 -32.18269 -31.68288 -28.32209 -28.02258 -27.78389 -27.15940 -24.85513 -24.45070 -23.37191 -22.97982 -22.47771 -20.40746 -18.86322 -18.56945 -18.02414 -17.59468 -17.50045 -17.36793 -16.70216 -16.58442 -16.53554 -16.01707 -15.88785 -15.34812 -15.12615 -14.88497 -14.82754 -14.63914 -14.46459 -14.39225 -14.10512 -13.95501 -13.66714 -13.51604 -13.37390 -13.12859 -12.99354 -12.75360 -12.72295 -12.50591 -12.43181 -12.32101 -12.22915 -12.12665 -11.74912 -11.32660 -11.07164 -10.78347 -10.65506 -10.51497 -10.49850 -10.12482 -9.71017 -8.83313 -8.24709 -5.57937 0.10432 0.16189 1.26274 1.33831 1.46433 1.51848 1.78307 2.38622 2.62626 2.98371 3.05495 3.39261 3.45674 3.55112 3.69148 3.74039 3.87896 3.99156 4.01534 4.08269 4.16928 4.22661 4.27061 4.35421 4.38570 4.40982 4.52198 4.58165 4.66041 4.67100 4.69505 4.72835 4.74277 4.81169 4.84609 4.92957 4.95438 5.03054 5.12041 5.20360 5.24651 5.30876 5.37379 5.55612 5.71978 5.88670 5.99418 6.09617 6.39527 6.95316 6.96406 7.16067 7.62188 8.00039 8.95427 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.002623 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.038975 B =10673.402415 C =11788.790508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.081 3.919 3 H 0.130 0.870 4 O -0.388 6.388 5 C 0.096 3.904 6 C -0.062 4.062 7 C -0.156 4.156 8 C 0.082 3.918 9 N -0.511 5.511 10 C 0.082 3.918 11 C -0.160 4.160 12 C 0.494 3.506 13 O -0.583 6.583 14 N -0.610 5.610 15 C 0.055 3.945 16 C 0.120 3.880 17 C -0.129 4.129 18 C 0.133 3.867 19 N -0.628 5.628 20 C 0.124 3.876 21 C -0.260 4.260 22 H 0.040 0.960 23 C -0.029 4.029 24 N -0.951 5.951 25 Si 0.948 3.052 26 H -0.281 1.281 27 H -0.309 1.309 28 H -0.249 1.249 29 H 0.097 0.903 30 H 0.040 0.960 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.158 0.842 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.149 0.851 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.043 0.957 43 H 0.013 0.987 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.022 0.978 47 H 0.016 0.984 48 H 0.031 0.969 49 H 0.073 0.927 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 27.544 12.837 30.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.020 3.980 3 H 0.147 0.853 4 O -0.308 6.308 5 C 0.020 3.980 6 C -0.070 4.070 7 C -0.175 4.175 8 C -0.074 4.074 9 N -0.221 5.221 10 C -0.074 4.074 11 C -0.180 4.180 12 C 0.282 3.718 13 O -0.462 6.462 14 N -0.343 5.343 15 C -0.086 4.086 16 C -0.004 4.004 17 C -0.170 4.170 18 C 0.007 3.993 19 N -0.353 5.353 20 C -0.020 4.020 21 C -0.390 4.390 22 H 0.057 0.943 23 C -0.225 4.225 24 N -0.595 5.595 25 Si 0.777 3.223 26 H -0.209 1.209 27 H -0.238 1.238 28 H -0.172 1.172 29 H 0.115 0.885 30 H 0.059 0.941 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.175 0.825 35 H 0.196 0.804 36 H 0.193 0.807 37 H 0.167 0.833 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.061 0.939 43 H 0.032 0.968 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.040 0.960 47 H 0.034 0.966 48 H 0.050 0.950 49 H 0.091 0.909 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.425 26.215 13.619 29.576 hybrid contribution 0.466 -0.539 -0.822 1.088 sum 1.891 25.676 12.797 28.751 Atomic orbital electron populations 1.22420 0.91818 1.03209 1.05605 1.22025 0.96185 0.96890 0.82889 0.85265 1.88138 1.86973 1.35784 1.19862 1.21647 1.02088 0.91201 0.83018 1.20315 0.94002 0.97313 0.95375 1.22381 1.02131 0.97663 0.95348 1.23224 0.91942 0.95376 0.96870 1.67685 1.04349 1.20374 1.29660 1.23162 1.00648 0.93038 0.90591 1.22352 0.96444 1.00014 0.99184 1.21392 0.78743 0.85531 0.86106 1.90758 1.43854 1.24653 1.86962 1.47939 1.62313 1.19447 1.04643 1.22480 0.99803 0.80619 1.05653 1.21440 0.96313 0.95762 0.86879 1.22233 0.98885 0.97934 0.97903 1.21240 0.89683 0.93288 0.95059 1.44228 1.30818 1.10647 1.49586 1.21188 0.92098 0.97704 0.90963 1.18684 0.92312 0.89641 1.38335 0.94273 1.26076 1.02059 0.96046 0.98331 1.70025 1.31683 1.22997 1.34803 0.85800 0.80335 0.75790 0.80417 1.20908 1.23764 1.17246 0.88475 0.94084 0.87603 0.89774 0.88784 0.82483 0.80448 0.80739 0.83300 0.89833 0.88925 0.88477 0.86254 0.93871 0.96805 0.90035 0.89872 0.95994 0.96572 0.94980 0.90851 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 9.12 71.98 0.66 -2.17 16 2 C 0.08 1.67 2.32 29.85 0.07 1.74 16 3 H 0.13 1.42 7.35 -2.39 -0.02 1.40 16 4 O -0.39 -10.14 9.52 -130.09 -1.24 -11.38 16 5 C 0.10 1.51 5.92 71.24 0.42 1.94 16 6 C -0.06 -1.21 5.55 -19.67 -0.11 -1.32 16 7 C -0.16 -2.84 9.82 22.36 0.22 -2.62 16 8 C 0.08 1.62 11.18 84.68 0.95 2.57 16 9 N -0.51 -11.99 10.36 -195.83 -2.03 -14.02 16 10 C 0.08 1.69 11.18 84.68 0.95 2.63 16 11 C -0.16 -3.15 9.82 22.36 0.22 -2.93 16 12 C 0.49 15.80 7.03 87.66 0.62 16.42 16 13 O -0.58 -27.30 16.08 15.85 0.25 -27.04 16 14 N -0.61 -15.38 2.87 -846.76 -2.43 -17.81 16 15 C 0.05 0.63 9.81 127.77 1.25 1.88 16 16 C 0.12 3.65 5.42 86.38 0.47 4.12 16 17 C -0.13 -4.83 5.86 30.60 0.18 -4.65 16 18 C 0.13 5.60 4.50 86.38 0.39 5.99 16 19 N -0.63 -30.38 2.54 -726.94 -1.85 -32.22 16 20 C 0.12 4.69 10.69 127.77 1.37 6.05 16 21 C -0.26 -15.65 9.96 84.03 0.84 -14.81 16 22 H 0.04 2.60 8.06 -2.91 -0.02 2.58 16 23 C -0.03 -1.83 5.30 84.86 0.45 -1.38 16 24 N -0.95 -64.38 13.97 21.65 0.30 -64.08 16 25 Si 0.95 49.67 24.99 68.60 1.71 51.39 16 26 H -0.28 -14.49 6.65 99.48 0.66 -13.83 16 27 H -0.31 -16.32 7.11 99.48 0.71 -15.62 16 28 H -0.25 -11.95 7.11 99.48 0.71 -11.24 16 29 H 0.10 1.24 5.46 -2.39 -0.01 1.23 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.11 0.94 8.03 -2.39 -0.02 0.92 16 32 H 0.08 0.94 8.04 -2.39 -0.02 0.92 16 33 H 0.09 0.89 7.99 -2.39 -0.02 0.87 16 34 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.18 2.47 8.06 -2.91 -0.02 2.44 16 36 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 37 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 38 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.09 0.85 8.04 -2.39 -0.02 0.83 16 40 H 0.10 0.72 4.30 -2.39 -0.01 0.71 16 41 H 0.12 2.53 8.07 -2.39 -0.02 2.51 16 42 H 0.04 1.67 7.36 -2.39 -0.02 1.65 16 43 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.08 2.78 8.07 -2.39 -0.02 2.76 16 46 H 0.02 1.08 2.93 -2.39 -0.01 1.08 16 47 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 48 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 49 H 0.07 2.13 8.03 -2.39 -0.02 2.11 16 50 H 0.26 16.83 8.31 -92.71 -0.77 16.06 16 Total: -1.00 -95.42 405.78 4.53 -90.89 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.87 Total: 10.82 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 8.93 Total: 13.46 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -6.00 Total: -128.13 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.98 Total: -38.43 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 1.71 Total: 51.39 kcal Total: -95.42 4.53 -90.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327264540.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.265 kcal (2) G-P(sol) polarization free energy of solvation -95.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds