Wall clock time and date at job start Tue Mar 31 2020 19:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47474 * 2 1 4 4 C 1.36940 * 120.00098 * 275.24135 * 3 2 1 5 5 H 1.08004 * 119.99777 * 37.70217 * 4 3 2 6 6 C 1.38807 * 119.99910 * 217.70252 * 4 3 2 7 7 N 1.31618 * 120.00592 * 21.65537 * 6 4 3 8 8 Si 1.86809 * 119.99860 * 201.65224 * 6 4 3 9 9 H 1.48497 * 109.47073 * 90.00135 * 8 6 4 10 10 H 1.48498 * 109.47071 * 210.00071 * 8 6 4 11 11 H 1.48498 * 109.46845 * 330.00091 * 8 6 4 12 12 C 1.46502 * 120.00111 * 95.24250 * 3 2 1 13 13 C 1.52997 * 109.46753 * 269.99833 * 12 3 2 14 14 C 1.53047 * 109.45792 * 174.99837 * 13 12 3 15 15 C 1.53190 * 109.31128 * 181.38717 * 14 13 12 16 16 N 1.46923 * 108.77596 * 305.36553 * 15 14 13 17 17 C 1.34777 * 120.62900 * 233.58667 * 16 15 14 18 18 O 1.21275 * 120.00264 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99766 * 180.02562 * 17 16 15 20 20 C 1.50704 * 109.46882 * 180.02562 * 19 17 16 21 21 C 1.34328 * 126.44731 * 90.00053 * 20 19 17 22 22 N 1.34471 * 107.67097 * 180.28327 * 21 20 19 23 23 C 1.30262 * 108.70350 * 359.56045 * 22 21 20 24 24 C 1.50693 * 125.62171 * 180.19560 * 23 22 21 25 25 O 1.33974 * 108.75467 * 0.43803 * 23 22 21 26 26 C 1.46928 * 118.74080 * 53.86253 * 16 15 14 27 27 C 1.53042 * 109.46428 * 295.06638 * 13 12 3 28 28 H 1.09005 * 109.46243 * 300.00134 * 1 2 3 29 29 H 1.09001 * 109.47020 * 59.99551 * 1 2 3 30 30 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46936 * 239.99617 * 2 1 3 32 32 H 1.09001 * 109.47020 * 120.00449 * 2 1 3 33 33 H 0.96993 * 120.00300 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46791 * 150.00067 * 12 3 2 35 35 H 1.09002 * 109.47131 * 29.99729 * 12 3 2 36 36 H 1.09004 * 109.46238 * 55.03321 * 13 12 3 37 37 H 1.08997 * 109.49675 * 61.43626 * 14 13 12 38 38 H 1.08998 * 109.52047 * 301.35194 * 14 13 12 39 39 H 1.09001 * 109.58516 * 185.57571 * 15 14 13 40 40 H 1.09002 * 109.70456 * 65.22699 * 15 14 13 41 41 H 1.08999 * 109.47511 * 59.99799 * 19 17 16 42 42 H 1.09004 * 109.47218 * 299.99432 * 19 17 16 43 43 H 1.08006 * 126.16158 * 0.02562 * 21 20 19 44 44 H 1.09008 * 109.46851 * 270.28570 * 24 23 22 45 45 H 1.08990 * 109.47651 * 30.28569 * 24 23 22 46 46 H 1.09000 * 109.47122 * 150.29226 * 24 23 22 47 47 H 1.09007 * 109.58568 * 65.92557 * 26 16 15 48 48 H 1.08993 * 109.58489 * 186.34767 * 26 16 15 49 49 H 1.08991 * 109.49557 * 298.56755 * 27 13 12 50 50 H 1.08998 * 109.49277 * 58.63065 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1446 2.0628 -1.1810 5 1 1.4117 1.9285 -1.9629 6 6 3.2143 2.9263 -1.3731 7 7 4.3072 2.7907 -0.6524 8 14 3.1027 4.2809 -2.6546 9 1 2.5455 5.5078 -2.0308 10 1 4.4577 4.5691 -3.1895 11 1 2.2162 3.8424 -3.7623 12 6 2.3719 2.0331 1.2634 13 6 1.1407 2.7390 1.8349 14 6 1.4764 3.3137 3.2131 15 6 0.2318 3.9894 3.7971 16 7 -0.2634 4.9820 2.8337 17 6 -0.4677 6.2604 3.2086 18 8 -0.2430 6.6006 4.3507 19 6 -0.9765 7.2666 2.2088 20 6 -1.1172 8.6106 2.8760 21 6 -0.1749 9.5646 2.9557 22 7 -0.6991 10.6004 3.6343 23 6 -1.9266 10.3090 3.9586 24 6 -2.8683 11.2033 4.7229 25 8 -2.2121 9.0811 3.5051 26 6 -0.5374 4.5532 1.4553 27 6 0.7211 3.8725 0.8962 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.0545 3.3943 -0.7864 34 1 3.1606 2.7644 1.0866 35 1 2.7234 1.2840 1.9730 36 1 0.3232 2.0241 1.9290 37 1 2.2769 4.0470 3.1163 38 1 1.7978 2.5093 3.8747 39 1 0.4903 4.4854 4.7326 40 1 -0.5401 3.2420 3.9810 41 1 -1.9469 6.9448 1.8309 42 1 -0.2718 7.3445 1.3808 43 1 0.8251 9.5080 2.5514 44 1 -2.7615 11.0149 5.7913 45 1 -2.6306 12.2460 4.5124 46 1 -3.8941 10.9958 4.4182 47 1 -1.3698 3.8494 1.4502 48 1 -0.7866 5.4214 0.8453 49 1 1.5287 4.6005 0.8212 50 1 0.5053 3.4655 -0.0917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328578380.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:28 Heat of formation + Delta-G solvation = -0.934586 kcal Electronic energy + Delta-G solvation = -29995.291271 eV Core-core repulsion = 26024.630105 eV Total energy + Delta-G solvation = -3970.661166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.41538 -40.08100 -37.68033 -35.73627 -34.82801 -33.49329 -32.69883 -31.90150 -31.10602 -30.21577 -28.93678 -26.96825 -25.90850 -24.23846 -22.97184 -22.59749 -22.26864 -21.26952 -20.41191 -19.86613 -18.78308 -17.45727 -17.03629 -16.67307 -16.49017 -15.74917 -15.53498 -14.94929 -14.55350 -14.24194 -14.11403 -13.97619 -13.74172 -13.51042 -13.36743 -13.26108 -13.21648 -12.91867 -12.89462 -12.67683 -12.35664 -12.24278 -12.10026 -11.72217 -11.38230 -11.33368 -11.16640 -10.94261 -10.81442 -10.64080 -10.61587 -10.45251 -10.32323 -10.10453 -9.96938 -9.82565 -9.57547 -9.44531 -8.75337 -8.49721 -8.47609 -6.57474 -5.81652 -3.39968 1.30806 2.43211 2.58872 2.61267 3.14025 3.28614 3.38133 3.39381 3.91329 4.42271 4.44196 4.54724 4.79015 4.88797 5.04135 5.09068 5.12013 5.15539 5.26866 5.30180 5.34556 5.39326 5.46865 5.50098 5.66604 5.69749 5.74841 5.88086 5.88996 5.98655 6.03151 6.24268 6.24630 6.27089 6.35432 6.37042 6.46129 6.60180 6.63500 6.81804 6.87895 6.92301 6.96393 7.11534 7.21090 7.45967 7.62684 7.69280 7.78416 8.15544 8.49047 9.17163 9.79702 10.39534 11.17173 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.003019 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.086932 B = 9272.086729 C =10322.612626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.255 4.255 5 H 0.058 0.942 6 C 0.016 3.984 7 N -0.884 5.884 8 Si 0.886 3.114 9 H -0.285 1.285 10 H -0.292 1.292 11 H -0.277 1.277 12 C 0.153 3.847 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.115 3.885 16 N -0.602 5.602 17 C 0.515 3.485 18 O -0.542 6.542 19 C -0.057 4.057 20 C -0.024 4.024 21 C -0.025 4.025 22 N -0.483 5.483 23 C 0.185 3.815 24 C -0.055 4.055 25 O -0.198 6.198 26 C 0.099 3.901 27 C -0.116 4.116 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.254 0.746 34 H 0.093 0.907 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.129 0.871 43 H 0.183 0.817 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.330 8.163 7.122 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.385 4.385 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.527 5.527 8 Si 0.716 3.284 9 H -0.211 1.211 10 H -0.218 1.218 11 H -0.202 1.202 12 C 0.026 3.974 13 C -0.122 4.122 14 C -0.167 4.167 15 C -0.007 4.007 16 N -0.335 5.335 17 C 0.302 3.698 18 O -0.420 6.420 19 C -0.097 4.097 20 C -0.077 4.077 21 C -0.163 4.163 22 N -0.213 5.213 23 C -0.022 4.022 24 C -0.112 4.112 25 O -0.085 6.085 26 C -0.023 4.023 27 C -0.154 4.154 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.131 0.869 42 H 0.147 0.853 43 H 0.200 0.800 44 H 0.110 0.890 45 H 0.118 0.882 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.775 8.938 7.868 17.464 hybrid contribution -0.212 -0.013 -0.956 0.980 sum -12.987 8.925 6.912 17.207 Atomic orbital electron populations 1.22367 1.00196 0.98820 1.01060 1.20829 0.91638 0.87567 0.98566 1.43762 1.76053 1.08084 1.02557 1.18903 1.04393 1.21034 0.94126 0.92389 1.25138 0.94228 1.01328 0.97755 1.70004 1.03064 1.37162 1.42424 0.86553 0.77104 0.82974 0.81787 1.21145 1.21821 1.20248 1.20940 0.94556 0.96307 0.85594 1.21810 1.01279 0.96706 0.92446 1.21952 0.96755 0.99924 0.98061 1.21625 0.96325 0.90368 0.92362 1.48151 1.64619 1.08369 1.12395 1.20229 0.78182 0.82706 0.88654 1.90707 1.52130 1.78840 1.20317 1.20133 1.05096 0.86886 0.97579 1.22517 0.86121 0.97645 1.01405 1.22993 1.01018 0.89983 1.02339 1.70414 1.07104 1.28991 1.14800 1.26228 0.93430 0.83270 0.99254 1.20227 0.95812 0.96537 0.98640 1.84337 1.38549 1.29940 1.55700 1.22160 0.99760 0.99693 0.80693 1.21971 0.94974 0.97453 1.00978 0.93764 0.93296 0.94785 0.94056 0.95028 0.93589 0.88975 0.96057 0.92579 0.91758 0.91351 0.89707 0.91881 0.86894 0.85281 0.79995 0.88986 0.88187 0.89468 0.91394 0.90549 0.92222 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 10.21 37.16 0.38 -2.37 16 2 C 0.14 2.77 6.44 -4.04 -0.03 2.75 16 3 N -0.58 -13.09 2.31 -173.23 -0.40 -13.49 16 4 C -0.25 -6.26 7.35 -15.06 -0.11 -6.37 16 5 H 0.06 1.45 7.92 -52.48 -0.42 1.03 16 6 C 0.02 0.41 4.95 -17.43 -0.09 0.33 16 7 N -0.88 -24.02 11.50 55.49 0.64 -23.38 16 8 Si 0.89 20.03 29.61 -169.99 -5.03 15.00 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 12 C 0.15 3.22 4.84 -4.04 -0.02 3.20 16 13 C -0.10 -1.73 2.35 -90.58 -0.21 -1.94 16 14 C -0.13 -1.95 5.36 -26.61 -0.14 -2.09 16 15 C 0.12 1.63 6.43 -3.71 -0.02 1.60 16 16 N -0.60 -8.43 2.97 -172.51 -0.51 -8.94 16 17 C 0.52 7.61 7.69 -10.98 -0.08 7.53 16 18 O -0.54 -10.01 15.45 5.56 0.09 -9.92 16 19 C -0.06 -0.65 4.60 -29.03 -0.13 -0.79 16 20 C -0.02 -0.32 5.88 -35.69 -0.21 -0.53 16 21 C -0.02 -0.35 11.80 -17.78 -0.21 -0.56 16 22 N -0.48 -7.00 11.29 -11.10 -0.13 -7.12 16 23 C 0.18 2.30 8.34 -12.95 -0.11 2.20 16 24 C -0.05 -0.39 10.51 36.00 0.38 -0.01 16 25 O -0.20 -2.73 10.78 5.34 0.06 -2.68 16 26 C 0.10 1.28 6.37 -3.49 -0.02 1.26 16 27 C -0.12 -1.94 4.97 -26.39 -0.13 -2.07 16 28 H 0.04 0.71 6.47 -51.93 -0.34 0.38 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.85 8.08 -51.92 -0.42 0.43 16 32 H 0.03 0.59 7.83 -51.93 -0.41 0.19 16 33 H 0.25 6.75 8.31 -40.82 -0.34 6.42 16 34 H 0.09 2.26 5.54 -51.93 -0.29 1.97 16 35 H 0.02 0.44 7.86 -51.93 -0.41 0.03 16 36 H 0.06 0.94 6.47 -51.93 -0.34 0.61 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.08 1.27 7.01 -51.93 -0.36 0.91 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.11 1.03 7.93 -51.93 -0.41 0.62 16 42 H 0.13 1.23 7.70 -51.93 -0.40 0.83 16 43 H 0.18 2.18 8.06 -52.48 -0.42 1.76 16 44 H 0.09 0.55 8.14 -51.92 -0.42 0.13 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 48 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.10 1.88 6.26 -51.93 -0.32 1.56 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -31.56 396.10 -8.29 -39.84 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -8.20 Total: 2.59 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.76 Total: 2.13 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.40 Total: -52.94 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.14 Total: -12.60 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.56 -8.29 -39.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328578380.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.907 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds