Wall clock time and date at job start Tue Mar 31 2020 19:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.47474 * 2 1 4 4 C 1.36940 * 120.00098 * 275.24135 * 3 2 1 5 5 H 1.08004 * 119.99777 * 37.70217 * 4 3 2 6 6 C 1.38807 * 119.99910 * 217.70252 * 4 3 2 7 7 N 1.31618 * 120.00592 * 21.65537 * 6 4 3 8 8 Si 1.86809 * 119.99860 * 201.65224 * 6 4 3 9 9 H 1.48497 * 109.47073 * 90.00135 * 8 6 4 10 10 H 1.48498 * 109.47071 * 210.00071 * 8 6 4 11 11 H 1.48498 * 109.46845 * 330.00091 * 8 6 4 12 12 C 1.46502 * 120.00111 * 95.24250 * 3 2 1 13 13 C 1.52997 * 109.46753 * 269.99833 * 12 3 2 14 14 C 1.53047 * 109.45792 * 174.99837 * 13 12 3 15 15 C 1.53190 * 109.31128 * 181.38717 * 14 13 12 16 16 N 1.46923 * 108.77596 * 305.36553 * 15 14 13 17 17 C 1.34777 * 120.62900 * 233.58667 * 16 15 14 18 18 O 1.21275 * 120.00264 * 359.97438 * 17 16 15 19 19 C 1.50702 * 119.99766 * 180.02562 * 17 16 15 20 20 C 1.50704 * 109.46882 * 180.02562 * 19 17 16 21 21 C 1.34328 * 126.44731 * 90.00053 * 20 19 17 22 22 N 1.34471 * 107.67097 * 180.28327 * 21 20 19 23 23 C 1.30262 * 108.70350 * 359.56045 * 22 21 20 24 24 C 1.50693 * 125.62171 * 180.19560 * 23 22 21 25 25 O 1.33974 * 108.75467 * 0.43803 * 23 22 21 26 26 C 1.46928 * 118.74080 * 53.86253 * 16 15 14 27 27 C 1.53042 * 109.46428 * 295.06638 * 13 12 3 28 28 H 1.09005 * 109.46243 * 300.00134 * 1 2 3 29 29 H 1.09001 * 109.47020 * 59.99551 * 1 2 3 30 30 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46936 * 239.99617 * 2 1 3 32 32 H 1.09001 * 109.47020 * 120.00449 * 2 1 3 33 33 H 0.96993 * 120.00300 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46791 * 150.00067 * 12 3 2 35 35 H 1.09002 * 109.47131 * 29.99729 * 12 3 2 36 36 H 1.09004 * 109.46238 * 55.03321 * 13 12 3 37 37 H 1.08997 * 109.49675 * 61.43626 * 14 13 12 38 38 H 1.08998 * 109.52047 * 301.35194 * 14 13 12 39 39 H 1.09001 * 109.58516 * 185.57571 * 15 14 13 40 40 H 1.09002 * 109.70456 * 65.22699 * 15 14 13 41 41 H 1.08999 * 109.47511 * 59.99799 * 19 17 16 42 42 H 1.09004 * 109.47218 * 299.99432 * 19 17 16 43 43 H 1.08006 * 126.16158 * 0.02562 * 21 20 19 44 44 H 1.09008 * 109.46851 * 270.28570 * 24 23 22 45 45 H 1.08990 * 109.47651 * 30.28569 * 24 23 22 46 46 H 1.09000 * 109.47122 * 150.29226 * 24 23 22 47 47 H 1.09007 * 109.58568 * 65.92557 * 26 16 15 48 48 H 1.08993 * 109.58489 * 186.34767 * 26 16 15 49 49 H 1.08991 * 109.49557 * 298.56755 * 27 13 12 50 50 H 1.08998 * 109.49277 * 58.63065 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1446 2.0628 -1.1810 5 1 1.4117 1.9285 -1.9629 6 6 3.2143 2.9263 -1.3731 7 7 4.3072 2.7907 -0.6524 8 14 3.1027 4.2809 -2.6546 9 1 2.5455 5.5078 -2.0308 10 1 4.4577 4.5691 -3.1895 11 1 2.2162 3.8424 -3.7623 12 6 2.3719 2.0331 1.2634 13 6 1.1407 2.7390 1.8349 14 6 1.4764 3.3137 3.2131 15 6 0.2318 3.9894 3.7971 16 7 -0.2634 4.9820 2.8337 17 6 -0.4677 6.2604 3.2086 18 8 -0.2430 6.6006 4.3507 19 6 -0.9765 7.2666 2.2088 20 6 -1.1172 8.6106 2.8760 21 6 -0.1749 9.5646 2.9557 22 7 -0.6991 10.6004 3.6343 23 6 -1.9266 10.3090 3.9586 24 6 -2.8683 11.2033 4.7229 25 8 -2.2121 9.0811 3.5051 26 6 -0.5374 4.5532 1.4553 27 6 0.7211 3.8725 0.8962 28 1 -0.3632 0.5139 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 5.0545 3.3943 -0.7864 34 1 3.1606 2.7644 1.0866 35 1 2.7234 1.2840 1.9730 36 1 0.3232 2.0241 1.9290 37 1 2.2769 4.0470 3.1163 38 1 1.7978 2.5093 3.8747 39 1 0.4903 4.4854 4.7326 40 1 -0.5401 3.2420 3.9810 41 1 -1.9469 6.9448 1.8309 42 1 -0.2718 7.3445 1.3808 43 1 0.8251 9.5080 2.5514 44 1 -2.7615 11.0149 5.7913 45 1 -2.6306 12.2460 4.5124 46 1 -3.8941 10.9958 4.4182 47 1 -1.3698 3.8494 1.4502 48 1 -0.7866 5.4214 0.8453 49 1 1.5287 4.6005 0.8212 50 1 0.5053 3.4655 -0.0917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328578380.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:27 Heat of formation + Delta-G solvation = -20.640085 kcal Electronic energy + Delta-G solvation = -29996.145766 eV Core-core repulsion = 26024.630105 eV Total energy + Delta-G solvation = -3971.515661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.37657 -41.25157 -39.07558 -37.26577 -35.81691 -34.55981 -33.92065 -33.69133 -32.16906 -31.15813 -30.48822 -28.38760 -27.01489 -25.81439 -24.15252 -23.92797 -23.34799 -22.30614 -21.93051 -21.24737 -19.97814 -18.56584 -18.44273 -18.01034 -17.53562 -16.83260 -16.78198 -16.60755 -15.80328 -15.52946 -15.49923 -15.12192 -15.07637 -14.81669 -14.58274 -14.29704 -14.20423 -14.01372 -13.91037 -13.78626 -13.55770 -13.34157 -13.12990 -13.10342 -12.93504 -12.89291 -12.59425 -12.33716 -12.25989 -12.14736 -12.04190 -11.87988 -11.64040 -11.61801 -11.54797 -11.20558 -11.00182 -10.91523 -10.38035 -9.71614 -9.66684 -8.44221 -7.72073 -5.34252 0.34830 1.46330 1.47991 1.52217 1.54153 1.58177 1.64409 2.07983 2.56339 3.11527 3.31751 3.44102 3.62198 3.73120 3.93402 3.97623 4.06811 4.12023 4.19852 4.24745 4.29397 4.44537 4.51716 4.54889 4.61342 4.63460 4.65193 4.69440 4.83590 4.85330 4.89736 4.92810 4.94632 4.95466 4.99599 5.14746 5.17822 5.26938 5.35446 5.37256 5.40968 5.44640 5.54099 5.67848 5.75076 5.82840 5.98319 6.34566 6.56060 6.66361 7.03682 7.27952 7.98170 8.51795 9.22098 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.003019 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.086932 B = 9272.086729 C =10322.612626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.243 4.243 5 H 0.056 0.944 6 C -0.029 4.029 7 N -0.920 5.920 8 Si 0.937 3.063 9 H -0.276 1.276 10 H -0.306 1.306 11 H -0.268 1.268 12 C 0.155 3.845 13 C -0.088 4.088 14 C -0.120 4.120 15 C 0.119 3.881 16 N -0.602 5.602 17 C 0.513 3.487 18 O -0.585 6.585 19 C -0.051 4.051 20 C -0.035 4.035 21 C -0.045 4.045 22 N -0.517 5.517 23 C 0.185 3.815 24 C -0.055 4.055 25 O -0.209 6.209 26 C 0.107 3.893 27 C -0.110 4.110 28 H 0.052 0.948 29 H 0.039 0.961 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.038 0.962 33 H 0.246 0.754 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.144 0.856 42 H 0.150 0.850 43 H 0.191 0.809 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.110 0.890 47 H 0.090 0.910 48 H 0.106 0.894 49 H 0.030 0.970 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.455 8.330 7.124 19.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.009 3.991 3 N -0.319 5.319 4 C -0.373 4.373 5 H 0.073 0.927 6 C -0.227 4.227 7 N -0.565 5.565 8 Si 0.766 3.234 9 H -0.202 1.202 10 H -0.234 1.234 11 H -0.193 1.193 12 C 0.029 3.971 13 C -0.109 4.109 14 C -0.158 4.158 15 C -0.003 4.003 16 N -0.334 5.334 17 C 0.302 3.698 18 O -0.466 6.466 19 C -0.090 4.090 20 C -0.088 4.088 21 C -0.183 4.183 22 N -0.247 5.247 23 C -0.021 4.021 24 C -0.112 4.112 25 O -0.097 6.097 26 C -0.015 4.015 27 C -0.148 4.148 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.208 0.792 44 H 0.123 0.877 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.109 0.891 48 H 0.124 0.876 49 H 0.049 0.951 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.930 9.083 7.852 19.948 hybrid contribution 0.792 -0.147 -0.917 1.221 sum -15.139 8.937 6.934 18.898 Atomic orbital electron populations 1.22151 0.97138 1.00520 1.00990 1.20963 0.93920 0.86039 0.98177 1.43979 1.76319 1.09250 1.02365 1.19027 1.03431 1.20345 0.94518 0.92670 1.25682 0.94065 1.03327 0.99581 1.70142 1.03762 1.38078 1.44522 0.85737 0.76263 0.81226 0.80178 1.20241 1.23374 1.19276 1.20835 0.95518 0.95481 0.85260 1.21581 0.99413 0.96797 0.93103 1.21847 0.96872 0.99718 0.97401 1.21569 0.96155 0.90687 0.91887 1.48222 1.64124 1.08288 1.12724 1.20767 0.77367 0.83070 0.88630 1.90691 1.54056 1.79484 1.22360 1.20240 1.07080 0.84934 0.96775 1.22832 0.86018 0.98328 1.01657 1.23289 1.01732 0.90469 1.02796 1.70417 1.08383 1.29762 1.16180 1.27336 0.93588 0.83130 0.98047 1.20547 0.95907 0.96136 0.98617 1.84345 1.38776 1.30554 1.55980 1.22184 0.98032 1.01151 0.80103 1.21806 0.96028 0.96758 1.00214 0.92933 0.94139 0.92205 0.95622 0.94329 0.94453 0.92624 0.96584 0.91292 0.94101 0.90216 0.90747 0.89650 0.83801 0.83240 0.79234 0.87712 0.86823 0.87122 0.89134 0.87634 0.95077 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 10.21 71.98 0.73 -3.82 16 2 C 0.13 5.17 6.44 86.38 0.56 5.73 16 3 N -0.60 -26.74 2.31 -701.99 -1.62 -28.36 16 4 C -0.24 -11.94 7.35 84.03 0.62 -11.32 16 5 H 0.06 2.73 7.92 -2.91 -0.02 2.70 16 6 C -0.03 -1.52 4.95 84.86 0.42 -1.10 16 7 N -0.92 -51.67 11.50 21.65 0.25 -51.42 16 8 Si 0.94 41.53 29.61 68.60 2.03 43.56 16 9 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.31 -14.23 7.11 99.48 0.71 -13.53 16 11 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 12 C 0.16 6.62 4.84 86.38 0.42 7.03 16 13 C -0.09 -2.91 2.35 -10.76 -0.03 -2.93 16 14 C -0.12 -3.56 5.36 30.67 0.16 -3.39 16 15 C 0.12 3.15 6.43 86.36 0.56 3.71 16 16 N -0.60 -15.48 2.97 -818.08 -2.43 -17.91 16 17 C 0.51 14.27 7.69 87.66 0.67 14.95 16 18 O -0.59 -21.32 15.45 -3.01 -0.05 -21.36 16 19 C -0.05 -1.04 4.60 29.10 0.13 -0.91 16 20 C -0.04 -0.91 5.88 24.79 0.15 -0.77 16 21 C -0.05 -1.25 11.80 83.39 0.98 -0.27 16 22 N -0.52 -14.81 11.29 -303.82 -3.43 -18.24 16 23 C 0.19 4.41 8.34 88.34 0.74 5.15 16 24 C -0.06 -0.65 10.51 71.23 0.75 0.10 16 25 O -0.21 -5.47 10.78 -3.81 -0.04 -5.51 16 26 C 0.11 2.41 6.37 86.51 0.55 2.96 16 27 C -0.11 -3.53 4.97 30.82 0.15 -3.38 16 28 H 0.05 1.52 6.47 -2.38 -0.02 1.50 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.03 1.04 8.08 -2.38 -0.02 1.03 16 32 H 0.04 1.41 7.83 -2.39 -0.02 1.39 16 33 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 34 H 0.06 2.84 5.54 -2.39 -0.01 2.83 16 35 H 0.02 0.67 7.86 -2.39 -0.02 0.65 16 36 H 0.07 2.13 6.47 -2.38 -0.02 2.11 16 37 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 39 H 0.07 2.17 7.01 -2.39 -0.02 2.15 16 40 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.14 2.04 7.93 -2.39 -0.02 2.02 16 42 H 0.15 2.42 7.70 -2.39 -0.02 2.41 16 43 H 0.19 4.60 8.06 -2.91 -0.02 4.58 16 44 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 45 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.11 0.79 8.14 -2.39 -0.02 0.78 16 47 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.11 1.80 5.93 -2.39 -0.01 1.79 16 49 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.08 2.95 6.26 -2.39 -0.01 2.94 16 Total: -1.00 -71.07 396.10 3.21 -67.86 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.93 Total: 19.65 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 7.57 Total: 11.73 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -7.23 Total: -115.93 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.09 Total: -26.88 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -71.07 3.21 -67.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328578380.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.217 kcal (2) G-P(sol) polarization free energy of solvation -71.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds