Wall clock time and date at job start Tue Mar 31 2020 19:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46496 * 109.47174 * 2 1 4 4 C 1.36345 * 125.63618 * 89.97655 * 3 2 1 5 5 C 1.34849 * 108.22065 * 179.97438 * 4 3 2 6 6 C 1.40897 * 107.41480 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.28823 * 179.73542 * 6 5 4 8 8 N 1.46501 * 109.47262 * 90.02857 * 7 6 5 9 9 C 1.46497 * 120.00264 * 89.99901 * 8 7 6 10 10 C 1.34782 * 119.99581 * 270.00044 * 8 7 6 11 11 O 1.21344 * 120.00184 * 3.27979 * 10 8 7 12 12 C 1.49446 * 119.99805 * 183.28114 * 10 8 7 13 13 O 1.21356 * 119.99834 * 5.22290 * 12 10 8 14 14 N 1.34777 * 120.00125 * 185.22073 * 12 10 8 15 15 C 1.46505 * 120.00046 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.46924 * 180.02562 * 15 14 12 17 17 C 1.52993 * 109.47070 * 300.00057 * 16 15 14 18 18 C 1.52998 * 109.47156 * 60.00064 * 16 15 14 19 19 C 1.50697 * 109.46736 * 179.97438 * 16 15 14 20 20 H 1.08006 * 120.00434 * 0.40849 * 19 16 15 21 21 C 1.37878 * 119.99938 * 180.40815 * 19 16 15 22 22 N 1.31514 * 120.00068 * 194.09951 * 21 19 16 23 23 Si 1.86803 * 120.00020 * 14.10146 * 21 19 16 24 24 H 1.48490 * 109.47197 * 89.93894 * 23 21 19 25 25 H 1.48494 * 109.47097 * 209.94505 * 23 21 19 26 26 H 1.48502 * 109.46564 * 329.93932 * 23 21 19 27 27 C 1.34849 * 107.41588 * 0.02562 * 6 5 4 28 28 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46844 * 299.99865 * 1 2 3 30 30 H 1.09000 * 109.46785 * 59.99683 * 1 2 3 31 31 H 1.09002 * 109.46545 * 240.00301 * 2 1 3 32 32 H 1.09000 * 109.46785 * 120.00317 * 2 1 3 33 33 H 1.07997 * 125.88766 * 359.95534 * 4 3 2 34 34 H 1.07997 * 126.29065 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.47275 * 210.02759 * 7 6 5 36 36 H 1.09003 * 109.47333 * 330.02544 * 7 6 5 37 37 H 1.08992 * 109.47404 * 95.41343 * 9 8 7 38 38 H 1.09000 * 109.47008 * 215.41882 * 9 8 7 39 39 H 1.08999 * 109.46607 * 335.41582 * 9 8 7 40 40 H 0.96993 * 119.99909 * 0.02562 * 14 12 10 41 41 H 1.09004 * 109.46931 * 300.00373 * 15 14 12 42 42 H 1.08996 * 109.47125 * 59.99913 * 15 14 12 43 43 H 1.08997 * 109.47692 * 67.90933 * 17 16 15 44 44 H 1.09001 * 109.46998 * 187.91010 * 17 16 15 45 45 H 1.08999 * 109.47315 * 307.90544 * 17 16 15 46 46 H 1.09004 * 109.46999 * 59.99506 * 18 16 15 47 47 H 1.08996 * 109.47497 * 179.97438 * 18 16 15 48 48 H 1.08997 * 109.47145 * 300.00045 * 18 16 15 49 49 H 0.97002 * 119.99772 * 180.02562 * 22 21 19 50 50 H 1.08007 * 125.88902 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2828 2.1303 1.1081 5 6 2.7124 3.3431 0.7045 6 6 2.7139 3.3426 -0.7045 7 6 3.1146 4.4892 -1.5964 8 7 4.5486 4.4057 -1.8844 9 6 5.0189 3.6548 -3.0511 10 6 5.4352 5.0199 -1.0761 11 8 5.0508 5.5915 -0.0771 12 6 6.8917 4.9967 -1.4100 13 8 7.2667 4.5081 -2.4557 14 7 7.7887 5.5185 -0.5500 15 6 9.2164 5.4963 -0.8777 16 6 10.0104 6.1454 0.2578 17 6 9.5510 7.5936 0.4382 18 6 9.7727 5.3696 1.5548 19 6 11.4790 6.1220 -0.0790 20 1 11.8122 5.6935 -1.0128 21 6 12.3975 6.6476 0.8048 22 7 13.6296 6.8832 0.4101 23 14 11.8916 7.0251 2.5630 24 1 12.1268 5.8305 3.4130 25 1 12.6953 8.1636 3.0757 26 1 10.4504 7.3813 2.5977 27 6 2.2845 2.1296 -1.1080 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.1677 1.8080 2.1324 34 1 3.0028 4.1637 1.3438 35 1 2.5531 4.4375 -2.5292 36 1 2.8992 5.4325 -1.0944 37 1 5.1617 4.3371 -3.8890 38 1 5.9650 3.1687 -2.8130 39 1 4.2799 2.8998 -3.3192 40 1 7.4889 5.9087 0.2859 41 1 9.5438 4.4645 -1.0059 42 1 9.3857 6.0486 -1.8019 43 1 8.5293 7.6061 0.8177 44 1 10.2080 8.0975 1.1471 45 1 9.5884 8.1089 -0.5215 46 1 10.0999 4.3378 1.4262 47 1 10.3386 5.8317 2.3636 48 1 8.7104 5.3860 1.7986 49 1 14.2759 7.2526 1.0321 50 1 2.1709 1.8068 -2.1325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328962740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:57 Heat of formation + Delta-G solvation = 8.605402 kcal Electronic energy + Delta-G solvation = -29284.880094 eV Core-core repulsion = 25314.632613 eV Total energy + Delta-G solvation = -3970.247481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44925 -40.41554 -38.37879 -36.83183 -35.92153 -34.41597 -33.23591 -31.46413 -30.63210 -29.19651 -27.27852 -27.06453 -26.33535 -25.79360 -24.90774 -23.64098 -22.47998 -20.34972 -20.11740 -19.51061 -19.01340 -17.48496 -17.41979 -16.68601 -16.09348 -15.94729 -15.52949 -15.15091 -14.99274 -14.86399 -14.57348 -14.32626 -13.76528 -13.65801 -13.64456 -13.17796 -12.93815 -12.90101 -12.83610 -12.62002 -12.53787 -12.43074 -12.34804 -12.23966 -12.16316 -11.96608 -11.74820 -11.41240 -11.29750 -11.04349 -10.45363 -10.26415 -10.20214 -10.04011 -9.25362 -9.08368 -8.85109 -8.63387 -8.59526 -8.57222 -8.43679 -8.26384 -6.13715 -4.11020 1.72713 2.00991 2.48155 2.69857 3.06987 3.27549 3.35145 3.41049 3.51191 3.86129 4.21715 4.37965 4.50918 4.65501 4.69891 4.78295 4.89528 5.02912 5.10506 5.15587 5.17590 5.20146 5.26266 5.48160 5.52165 5.66131 5.75016 5.75786 5.95436 6.03821 6.06569 6.09376 6.28680 6.38592 6.40737 6.46004 6.54764 6.62638 6.70457 6.72843 6.84490 6.95115 7.03924 7.13807 7.20577 7.21913 7.43490 7.62552 7.73557 8.01528 8.35490 8.46348 8.90816 9.50459 10.99080 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.002395 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.299592 B =11687.214974 C =12277.173298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 N -0.449 5.449 4 C -0.023 4.023 5 C -0.172 4.172 6 C -0.187 4.187 7 C 0.187 3.813 8 N -0.585 5.585 9 C 0.079 3.921 10 C 0.507 3.493 11 O -0.521 6.521 12 C 0.497 3.503 13 O -0.527 6.527 14 N -0.688 5.688 15 C 0.139 3.861 16 C 0.028 3.972 17 C -0.143 4.143 18 C -0.152 4.152 19 C -0.512 4.512 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.890 5.890 23 Si 0.879 3.121 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.242 1.242 27 C 0.000 4.000 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.158 0.842 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.408 0.592 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.025 0.975 44 H 0.055 0.945 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.045 0.955 48 H 0.031 0.969 49 H 0.264 0.736 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.398 -11.975 -2.508 30.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.021 4.021 3 N -0.125 5.125 4 C -0.151 4.151 5 C -0.196 4.196 6 C -0.195 4.195 7 C 0.065 3.935 8 N -0.319 5.319 9 C -0.063 4.063 10 C 0.290 3.710 11 O -0.396 6.396 12 C 0.277 3.723 13 O -0.405 6.405 14 N -0.340 5.340 15 C 0.018 3.982 16 C 0.027 3.973 17 C -0.200 4.200 18 C -0.208 4.208 19 C -0.550 4.550 20 H 0.095 0.905 21 C -0.127 4.127 22 N -0.527 5.527 23 Si 0.711 3.289 24 H -0.214 1.214 25 H -0.232 1.232 26 H -0.168 1.168 27 C -0.131 4.131 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.176 0.824 34 H 0.156 0.844 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.114 0.886 39 H 0.078 0.922 40 H 0.245 0.755 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.050 0.950 49 H 0.074 0.926 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -27.243 -12.305 -2.681 30.014 hybrid contribution -0.191 0.199 1.413 1.440 sum -27.435 -12.106 -1.268 30.014 Atomic orbital electron populations 1.22173 0.94472 1.02849 1.03204 1.21802 0.95351 0.80672 1.04229 1.44112 1.50826 1.11463 1.06114 1.21793 1.09144 0.92777 0.91396 1.20909 1.06584 0.97543 0.94595 1.19721 1.09263 0.95862 0.94618 1.19769 0.79114 0.96879 0.97746 1.47777 1.06240 1.50722 1.27142 1.22149 1.01273 0.95820 0.87088 1.20368 0.87479 0.79740 0.83417 1.90717 1.80144 1.43390 1.25368 1.20026 0.86921 0.80366 0.84938 1.90681 1.80717 1.44758 1.24387 1.46200 1.08228 1.57471 1.22093 1.21689 0.75680 1.01400 0.99475 1.18733 0.96306 0.91572 0.90690 1.22293 0.98017 0.98703 1.01037 1.22433 0.98304 1.00946 0.99166 1.20679 0.87472 1.40605 1.06262 0.90503 1.24962 0.94856 0.94225 0.98643 1.69956 1.04400 1.43145 1.35205 0.87416 0.78701 0.77263 0.85537 1.21363 1.23219 1.16823 1.21582 1.08023 0.92144 0.91343 0.90865 0.91856 0.91870 0.89402 0.89381 0.82448 0.84438 0.89950 0.89168 0.92149 0.88590 0.92194 0.75478 0.91432 0.91264 0.95617 0.92606 0.93291 0.92849 0.93662 0.95015 0.92586 0.82521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.24 37.16 0.38 -0.33 16 2 C 0.10 0.52 6.81 -4.04 -0.03 0.49 16 3 N -0.45 -3.86 2.75 -117.12 -0.32 -4.18 16 4 C -0.02 -0.22 11.43 -16.75 -0.19 -0.42 16 5 C -0.17 -2.07 10.81 -39.78 -0.43 -2.50 16 6 C -0.19 -2.08 5.72 -104.82 -0.60 -2.68 16 7 C 0.19 2.01 5.85 -5.20 -0.03 1.98 16 8 N -0.59 -7.47 2.86 -183.47 -0.52 -7.99 16 9 C 0.08 0.87 9.30 59.85 0.56 1.43 16 10 C 0.51 7.98 7.73 -11.58 -0.09 7.89 16 11 O -0.52 -8.99 16.10 5.50 0.09 -8.90 16 12 C 0.50 8.57 7.73 -11.59 -0.09 8.48 16 13 O -0.53 -9.65 13.31 5.49 0.07 -9.58 16 14 N -0.69 -12.25 4.99 -60.73 -0.30 -12.55 16 15 C 0.14 2.80 4.50 -4.04 -0.02 2.78 16 16 C 0.03 0.62 0.50 -155.67 -0.08 0.55 16 17 C -0.14 -3.01 7.53 37.15 0.28 -2.73 16 18 C -0.15 -3.17 7.51 37.16 0.28 -2.89 16 19 C -0.51 -13.73 8.62 -34.44 -0.30 -14.03 16 20 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 21 C 0.08 2.12 5.33 -17.82 -0.09 2.02 16 22 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 23 Si 0.88 21.21 22.93 -169.99 -3.90 17.31 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 26 H -0.24 -5.37 4.43 56.52 0.25 -5.12 16 27 C 0.00 0.00 11.35 -16.75 -0.19 -0.19 16 28 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.14 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 36 H 0.09 1.06 7.47 -51.93 -0.39 0.67 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.27 5.78 -51.93 -0.30 0.97 16 39 H 0.06 0.49 8.03 -51.93 -0.42 0.07 16 40 H 0.41 7.04 5.72 -40.82 -0.23 6.81 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.02 0.47 7.09 -51.93 -0.37 0.10 16 44 H 0.06 1.23 4.24 -51.93 -0.22 1.01 16 45 H 0.05 1.01 8.13 -51.93 -0.42 0.59 16 46 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.05 0.99 2.27 -51.93 -0.12 0.88 16 48 H 0.03 0.58 6.86 -51.93 -0.36 0.22 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 50 H 0.16 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 393.89 15.07 5.94 5.94 Total: -1.00 -32.24 393.89 -6.84 -39.08 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.02 Total: 6.86 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -0.64 Total: -0.14 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -0.38 Total: -50.57 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.16 Total: -18.47 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -3.90 Total: 17.31 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.24 -6.84 -39.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328962740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.685 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds