Wall clock time and date at job start Tue Mar 31 2020 19:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46496 * 109.47174 * 2 1 4 4 C 1.36345 * 125.63618 * 89.97655 * 3 2 1 5 5 C 1.34849 * 108.22065 * 179.97438 * 4 3 2 6 6 C 1.40897 * 107.41480 * 359.97438 * 5 4 3 7 7 C 1.50696 * 126.28823 * 179.73542 * 6 5 4 8 8 N 1.46501 * 109.47262 * 90.02857 * 7 6 5 9 9 C 1.46497 * 120.00264 * 89.99901 * 8 7 6 10 10 C 1.34782 * 119.99581 * 270.00044 * 8 7 6 11 11 O 1.21344 * 120.00184 * 3.27979 * 10 8 7 12 12 C 1.49446 * 119.99805 * 183.28114 * 10 8 7 13 13 O 1.21356 * 119.99834 * 5.22290 * 12 10 8 14 14 N 1.34777 * 120.00125 * 185.22073 * 12 10 8 15 15 C 1.46505 * 120.00046 * 180.02562 * 14 12 10 16 16 C 1.53000 * 109.46924 * 180.02562 * 15 14 12 17 17 C 1.52993 * 109.47070 * 300.00057 * 16 15 14 18 18 C 1.52998 * 109.47156 * 60.00064 * 16 15 14 19 19 C 1.50697 * 109.46736 * 179.97438 * 16 15 14 20 20 H 1.08006 * 120.00434 * 0.40849 * 19 16 15 21 21 C 1.37878 * 119.99938 * 180.40815 * 19 16 15 22 22 N 1.31514 * 120.00068 * 194.09951 * 21 19 16 23 23 Si 1.86803 * 120.00020 * 14.10146 * 21 19 16 24 24 H 1.48490 * 109.47197 * 89.93894 * 23 21 19 25 25 H 1.48494 * 109.47097 * 209.94505 * 23 21 19 26 26 H 1.48502 * 109.46564 * 329.93932 * 23 21 19 27 27 C 1.34849 * 107.41588 * 0.02562 * 6 5 4 28 28 H 1.08997 * 109.46896 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.46844 * 299.99865 * 1 2 3 30 30 H 1.09000 * 109.46785 * 59.99683 * 1 2 3 31 31 H 1.09002 * 109.46545 * 240.00301 * 2 1 3 32 32 H 1.09000 * 109.46785 * 120.00317 * 2 1 3 33 33 H 1.07997 * 125.88766 * 359.95534 * 4 3 2 34 34 H 1.07997 * 126.29065 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.47275 * 210.02759 * 7 6 5 36 36 H 1.09003 * 109.47333 * 330.02544 * 7 6 5 37 37 H 1.08992 * 109.47404 * 95.41343 * 9 8 7 38 38 H 1.09000 * 109.47008 * 215.41882 * 9 8 7 39 39 H 1.08999 * 109.46607 * 335.41582 * 9 8 7 40 40 H 0.96993 * 119.99909 * 0.02562 * 14 12 10 41 41 H 1.09004 * 109.46931 * 300.00373 * 15 14 12 42 42 H 1.08996 * 109.47125 * 59.99913 * 15 14 12 43 43 H 1.08997 * 109.47692 * 67.90933 * 17 16 15 44 44 H 1.09001 * 109.46998 * 187.91010 * 17 16 15 45 45 H 1.08999 * 109.47315 * 307.90544 * 17 16 15 46 46 H 1.09004 * 109.46999 * 59.99506 * 18 16 15 47 47 H 1.08996 * 109.47497 * 179.97438 * 18 16 15 48 48 H 1.08997 * 109.47145 * 300.00045 * 18 16 15 49 49 H 0.97002 * 119.99772 * 180.02562 * 22 21 19 50 50 H 1.08007 * 125.88902 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2828 2.1303 1.1081 5 6 2.7124 3.3431 0.7045 6 6 2.7139 3.3426 -0.7045 7 6 3.1146 4.4892 -1.5964 8 7 4.5486 4.4057 -1.8844 9 6 5.0189 3.6548 -3.0511 10 6 5.4352 5.0199 -1.0761 11 8 5.0508 5.5915 -0.0771 12 6 6.8917 4.9967 -1.4100 13 8 7.2667 4.5081 -2.4557 14 7 7.7887 5.5185 -0.5500 15 6 9.2164 5.4963 -0.8777 16 6 10.0104 6.1454 0.2578 17 6 9.5510 7.5936 0.4382 18 6 9.7727 5.3696 1.5548 19 6 11.4790 6.1220 -0.0790 20 1 11.8122 5.6935 -1.0128 21 6 12.3975 6.6476 0.8048 22 7 13.6296 6.8832 0.4101 23 14 11.8916 7.0251 2.5630 24 1 12.1268 5.8305 3.4130 25 1 12.6953 8.1636 3.0757 26 1 10.4504 7.3813 2.5977 27 6 2.2845 2.1296 -1.1080 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 2.1677 1.8080 2.1324 34 1 3.0028 4.1637 1.3438 35 1 2.5531 4.4375 -2.5292 36 1 2.8992 5.4325 -1.0944 37 1 5.1617 4.3371 -3.8890 38 1 5.9650 3.1687 -2.8130 39 1 4.2799 2.8998 -3.3192 40 1 7.4889 5.9087 0.2859 41 1 9.5438 4.4645 -1.0059 42 1 9.3857 6.0486 -1.8019 43 1 8.5293 7.6061 0.8177 44 1 10.2080 8.0975 1.1471 45 1 9.5884 8.1089 -0.5215 46 1 10.0999 4.3378 1.4262 47 1 10.3386 5.8317 2.3636 48 1 8.7104 5.3860 1.7986 49 1 14.2759 7.2526 1.0321 50 1 2.1709 1.8068 -2.1325 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328962740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:16:56 Heat of formation + Delta-G solvation = -12.140498 kcal Electronic energy + Delta-G solvation = -29285.779704 eV Core-core repulsion = 25314.632613 eV Total energy + Delta-G solvation = -3971.147091 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.20172 -41.64070 -39.72847 -38.44774 -37.00303 -35.14104 -34.78271 -33.41405 -31.35001 -29.86792 -28.48272 -28.05604 -28.01908 -27.21406 -26.71204 -24.33141 -23.57408 -21.30222 -21.03336 -20.93767 -20.24787 -18.80694 -18.16845 -18.05945 -17.77586 -17.19733 -17.05417 -16.48751 -16.04421 -15.78603 -15.58161 -15.34235 -14.98970 -14.90555 -14.62511 -14.41124 -14.30117 -14.26198 -14.04469 -13.95363 -13.74290 -13.65431 -13.38440 -13.14311 -13.02769 -12.92539 -12.74072 -12.40586 -12.38023 -12.19198 -12.12020 -12.05880 -12.03057 -11.77986 -11.09098 -10.62504 -10.46956 -10.32484 -10.17699 -9.76644 -9.38994 -9.00368 -8.29942 -6.30748 0.43797 1.19661 1.36631 1.39263 1.49242 1.50532 2.07779 2.11568 2.23419 2.34862 2.72224 3.06068 3.40816 3.85373 4.03250 4.10881 4.14728 4.19079 4.30289 4.35607 4.38174 4.39252 4.43196 4.45084 4.65497 4.71973 4.77003 4.80078 4.82626 4.84231 4.86795 4.90891 4.95383 5.00693 5.04591 5.16331 5.22614 5.30408 5.32405 5.41535 5.48151 5.54817 5.68580 5.75538 5.99638 6.06810 6.27389 6.32516 6.35716 6.57291 6.71430 6.79029 7.02012 7.33928 8.86553 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019463 B = 0.002395 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.299592 B =11687.214974 C =12277.173298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.447 5.447 4 C -0.024 4.024 5 C -0.207 4.207 6 C -0.211 4.211 7 C 0.187 3.813 8 N -0.574 5.574 9 C 0.078 3.922 10 C 0.506 3.494 11 O -0.541 6.541 12 C 0.497 3.503 13 O -0.539 6.539 14 N -0.686 5.686 15 C 0.155 3.845 16 C 0.026 3.974 17 C -0.142 4.142 18 C -0.151 4.151 19 C -0.512 4.512 20 H 0.036 0.964 21 C 0.020 3.980 22 N -0.942 5.942 23 Si 0.934 3.066 24 H -0.284 1.284 25 H -0.312 1.312 26 H -0.204 1.204 27 C 0.009 3.991 28 H 0.091 0.909 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.174 0.826 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.413 0.587 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.039 0.961 48 H 0.063 0.937 49 H 0.264 0.736 50 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.845 -13.477 -2.249 33.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.122 5.122 4 C -0.154 4.154 5 C -0.232 4.232 6 C -0.218 4.218 7 C 0.066 3.934 8 N -0.306 5.306 9 C -0.063 4.063 10 C 0.288 3.712 11 O -0.419 6.419 12 C 0.278 3.722 13 O -0.418 6.418 14 N -0.338 5.338 15 C 0.032 3.968 16 C 0.025 3.975 17 C -0.199 4.199 18 C -0.207 4.207 19 C -0.550 4.550 20 H 0.054 0.946 21 C -0.178 4.178 22 N -0.581 5.581 23 Si 0.763 3.237 24 H -0.211 1.211 25 H -0.242 1.242 26 H -0.128 1.128 27 C -0.123 4.123 28 H 0.110 0.890 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.192 0.808 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.115 0.885 40 H 0.251 0.749 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.057 0.943 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -30.757 -13.846 -2.448 33.819 hybrid contribution 0.825 0.545 1.184 1.543 sum -29.932 -13.301 -1.264 32.778 Atomic orbital electron populations 1.22128 0.93685 1.03860 1.02448 1.22092 0.95933 0.78877 1.05607 1.44394 1.49797 1.12509 1.05503 1.22024 1.08313 0.92402 0.92641 1.20940 1.08723 0.98124 0.95385 1.19789 1.10943 0.96934 0.94183 1.19936 0.77819 0.96324 0.99301 1.47930 1.06802 1.49277 1.26599 1.22212 1.01413 0.96432 0.86287 1.20060 0.86887 0.80464 0.83824 1.90711 1.80127 1.44760 1.26338 1.20388 0.87728 0.79600 0.84465 1.90685 1.81233 1.45009 1.24866 1.46001 1.07164 1.58059 1.22586 1.21272 0.77051 1.00322 0.98176 1.18678 0.93519 0.93114 0.92197 1.22225 0.99538 0.97230 1.00921 1.22368 1.00271 1.00435 0.97659 1.20941 0.90378 1.39139 1.04525 0.94587 1.25779 0.94696 0.94411 1.02926 1.70098 1.05949 1.45294 1.36764 0.86519 0.80380 0.76777 0.79992 1.21103 1.24151 1.12824 1.22000 1.06260 0.91371 0.92695 0.88981 0.92890 0.92308 0.87710 0.88408 0.80832 0.86620 0.86480 0.90698 0.91763 0.90815 0.88505 0.74889 0.92429 0.92581 0.92474 0.93532 0.93604 0.93028 0.94294 0.91862 0.92677 0.79560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 10.24 71.99 0.74 -0.16 16 2 C 0.10 0.67 6.81 86.38 0.59 1.26 16 3 N -0.45 -6.49 2.75 -524.47 -1.44 -7.94 16 4 C -0.02 -0.45 11.43 83.21 0.95 0.50 16 5 C -0.21 -4.90 10.81 22.14 0.24 -4.67 16 6 C -0.21 -4.32 5.72 -19.99 -0.11 -4.44 16 7 C 0.19 3.65 5.85 85.63 0.50 4.15 16 8 N -0.57 -13.60 2.86 -852.74 -2.44 -16.04 16 9 C 0.08 1.53 9.30 127.77 1.19 2.72 16 10 C 0.51 15.41 7.73 87.27 0.67 16.09 16 11 O -0.54 -18.36 16.10 -3.23 -0.05 -18.41 16 12 C 0.50 16.73 7.73 87.27 0.67 17.41 16 13 O -0.54 -19.47 13.31 -3.26 -0.04 -19.51 16 14 N -0.69 -23.65 4.99 -464.39 -2.32 -25.96 16 15 C 0.15 6.20 4.50 86.38 0.39 6.58 16 16 C 0.03 1.14 0.50 -52.93 -0.03 1.11 16 17 C -0.14 -5.70 7.53 71.98 0.54 -5.16 16 18 C -0.15 -5.96 7.51 71.98 0.54 -5.42 16 19 C -0.51 -28.09 8.62 25.60 0.22 -27.87 16 20 H 0.04 2.21 7.99 -2.91 -0.02 2.19 16 21 C 0.02 1.12 5.33 84.65 0.45 1.57 16 22 N -0.94 -58.30 13.96 21.45 0.30 -58.00 16 23 Si 0.93 43.42 22.93 68.60 1.57 44.99 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.31 -14.89 7.11 99.48 0.71 -14.19 16 26 H -0.20 -8.25 4.43 99.48 0.44 -7.81 16 27 C 0.01 0.14 11.35 83.21 0.94 1.08 16 28 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.17 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.12 3.14 8.06 -2.91 -0.02 3.12 16 35 H 0.12 1.44 8.07 -2.38 -0.02 1.42 16 36 H 0.07 1.70 7.47 -2.39 -0.02 1.68 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.07 1.83 5.78 -2.39 -0.01 1.82 16 39 H 0.10 1.19 8.03 -2.39 -0.02 1.17 16 40 H 0.41 13.42 5.72 -92.71 -0.53 12.89 16 41 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 42 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 43 H 0.06 1.93 7.09 -2.39 -0.02 1.92 16 44 H 0.05 1.95 4.24 -2.39 -0.01 1.94 16 45 H 0.04 1.84 8.13 -2.39 -0.02 1.82 16 46 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.04 1.60 2.27 -2.39 -0.01 1.59 16 48 H 0.06 2.11 6.86 -2.39 -0.02 2.09 16 49 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 50 H 0.19 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -72.51 393.89 4.23 -68.29 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.15 Total: 27.83 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 8.50 Total: 4.75 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -5.90 Total: -107.94 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.10 Total: -37.92 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 1.57 Total: 44.99 kcal Total: -72.51 4.23 -68.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328962740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.146 kcal (2) G-P(sol) polarization free energy of solvation -72.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds