Wall clock time and date at job start Tue Mar 31 2020 18:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47027 * 2 1 4 4 C 1.52996 * 109.47060 * 240.00154 * 2 1 3 5 5 N 1.46498 * 109.47281 * 184.99802 * 4 2 1 6 6 C 1.34774 * 120.00409 * 179.97438 * 5 4 2 7 7 O 1.21611 * 119.99898 * 0.02562 * 6 5 4 8 8 C 1.47416 * 119.99911 * 180.02562 * 6 5 4 9 9 C 1.36093 * 126.44720 * 180.02562 * 8 6 5 10 10 O 1.34258 * 106.95315 * 180.02562 * 9 8 6 11 11 C 1.34056 * 108.22435 * 359.97438 * 10 9 8 12 12 C 1.50696 * 125.37891 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47209 * 60.02694 * 12 11 10 14 14 C 1.52999 * 109.47480 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.46784 * 60.00143 * 14 13 12 16 16 C 1.53000 * 109.47628 * 300.00254 * 15 14 13 17 17 C 1.52994 * 109.47102 * 59.99518 * 16 15 14 18 18 N 1.29940 * 109.24124 * 359.72806 * 11 10 9 19 19 N 1.46502 * 109.47089 * 120.00032 * 2 1 3 20 20 C 1.46494 * 120.00013 * 60.00011 * 19 2 1 21 21 C 1.36933 * 119.99934 * 240.00120 * 19 2 1 22 22 H 1.08000 * 120.00189 * 23.11764 * 21 19 2 23 23 C 1.38810 * 119.99943 * 203.11604 * 21 19 2 24 24 N 1.31618 * 119.99978 * 11.70324 * 23 21 19 25 25 Si 1.86802 * 119.99934 * 191.69779 * 23 21 19 26 26 H 1.48495 * 109.47342 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46892 * 120.00151 * 25 23 21 28 28 H 1.48503 * 109.47092 * 240.00231 * 25 23 21 29 29 H 1.09004 * 109.47504 * 299.99539 * 1 2 3 30 30 H 1.08999 * 109.47027 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47348 * 59.99795 * 1 2 3 32 32 H 1.09003 * 109.47308 * 304.99563 * 4 2 1 33 33 H 1.09006 * 109.47360 * 64.99911 * 4 2 1 34 34 H 0.97002 * 119.99623 * 0.02562 * 5 4 2 35 35 H 1.08005 * 126.52597 * 0.02562 * 9 8 6 36 36 H 1.08998 * 109.47150 * 180.02562 * 12 11 10 37 37 H 1.08998 * 109.47576 * 300.00214 * 13 12 11 38 38 H 1.09002 * 109.46946 * 59.99809 * 13 12 11 39 39 H 1.08998 * 109.47208 * 300.00211 * 14 13 12 40 40 H 1.09004 * 109.47285 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.47512 * 180.02562 * 15 14 13 42 42 H 1.09008 * 109.47224 * 60.00114 * 15 14 13 43 43 H 1.09008 * 109.46704 * 300.00178 * 16 15 14 44 44 H 1.09002 * 109.47579 * 180.02562 * 16 15 14 45 45 H 1.09001 * 109.47337 * 180.02562 * 17 16 15 46 46 H 1.08998 * 109.46863 * 60.00719 * 17 16 15 47 47 H 1.09008 * 109.47275 * 93.93087 * 20 19 2 48 48 H 1.08998 * 109.47705 * 213.92786 * 20 19 2 49 49 H 1.09006 * 109.47434 * 333.93390 * 20 19 2 50 50 H 0.96996 * 120.00031 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.1730 -1.4291 -2.1907 7 8 3.5683 -1.8853 -3.1421 8 6 5.6421 -1.5353 -2.1314 9 6 6.4492 -2.1129 -3.0625 10 8 7.7099 -1.9920 -2.6169 11 6 7.6787 -1.3539 -1.4384 12 6 8.8825 -1.0142 -0.5979 13 6 9.8225 -0.1084 -1.3959 14 6 11.0444 0.2370 -0.5424 15 6 11.7789 -1.0492 -0.1594 16 6 10.8390 -1.9551 0.6386 17 6 9.6171 -2.3004 -0.2148 18 7 6.4469 -1.0689 -1.1383 19 7 2.0183 -0.6906 1.1962 20 6 1.6644 -2.0932 1.4280 21 6 2.8056 -0.0251 2.0976 22 1 2.7706 1.0529 2.1526 23 6 3.6485 -0.7361 2.9406 24 7 3.8673 -2.0161 2.7260 25 14 4.4724 0.1238 4.3798 26 1 4.0651 1.5516 4.4024 27 1 4.0594 -0.5284 5.6484 28 1 5.9473 0.0316 4.2331 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 1.6054 -1.7198 -1.2952 33 1 1.7516 -0.1582 -2.1370 34 1 3.9823 -0.4627 -0.4316 35 1 6.1354 -2.5797 -3.9845 36 1 8.5603 -0.4972 0.3059 37 1 10.1446 -0.6253 -2.2999 38 1 9.2992 0.8081 -1.6685 39 1 10.7219 0.7542 0.3612 40 1 11.7143 0.8820 -1.1112 41 1 12.6492 -0.8033 0.4490 42 1 12.1014 -1.5664 -1.0632 43 1 10.5165 -1.4379 1.5424 44 1 11.3625 -2.8713 0.9119 45 1 8.9472 -2.9454 0.3538 46 1 9.9396 -2.8176 -1.1185 47 1 2.4507 -2.7364 1.0328 48 1 1.5554 -2.2684 2.4983 49 1 0.7238 -2.3185 0.9253 50 1 4.4566 -2.5128 3.3149 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329628048.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:25 Heat of formation + Delta-G solvation = -36.742434 kcal Electronic energy + Delta-G solvation = -30026.721921 eV Core-core repulsion = 26054.508010 eV Total energy + Delta-G solvation = -3972.213911 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.51314 -40.59454 -39.42106 -38.39622 -35.97418 -35.36013 -33.74826 -33.27550 -31.73320 -31.13304 -30.16698 -28.00809 -27.56244 -25.13476 -24.69792 -24.39000 -23.56112 -22.19942 -21.47345 -21.01984 -20.42270 -19.05298 -18.82387 -17.82675 -17.52290 -17.19347 -16.96532 -16.56396 -16.19630 -15.60711 -15.58620 -15.41341 -15.13529 -15.00367 -14.73517 -14.54678 -14.36436 -13.86686 -13.63598 -13.59425 -13.53834 -13.23038 -13.17054 -12.85233 -12.62984 -12.50278 -12.40932 -12.28535 -12.25169 -12.07548 -12.06808 -11.82913 -11.74977 -11.48753 -11.45114 -11.34841 -11.19783 -11.15028 -10.60521 -10.18218 -9.87539 -8.75067 -7.76663 -5.25147 0.05184 0.95034 1.46298 1.48516 1.51915 1.57310 2.15614 2.30046 2.53198 2.77342 3.38264 3.61074 3.64606 3.68792 3.73267 3.84552 4.01849 4.05451 4.21953 4.27766 4.37637 4.39278 4.48117 4.50018 4.54434 4.58055 4.60075 4.67133 4.69357 4.78075 4.83501 4.91096 5.04276 5.07043 5.08610 5.11740 5.21538 5.21969 5.26227 5.29582 5.35580 5.36032 5.42531 5.54273 5.57381 5.69385 5.74583 6.35965 6.38509 6.66156 7.12551 7.19854 7.90817 8.36008 9.25370 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.004049 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.304089 B = 6913.639015 C = 9010.539084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.155 3.845 3 H 0.070 0.930 4 C 0.110 3.890 5 N -0.687 5.687 6 C 0.591 3.409 7 O -0.579 6.579 8 C -0.101 4.101 9 C 0.026 3.974 10 O -0.188 6.188 11 C 0.205 3.795 12 C 0.010 3.990 13 C -0.108 4.108 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.117 4.117 17 C -0.112 4.112 18 N -0.485 5.485 19 N -0.602 5.602 20 C 0.184 3.816 21 C -0.260 4.260 22 H 0.070 0.930 23 C -0.040 4.040 24 N -0.927 5.927 25 Si 0.957 3.043 26 H -0.267 1.267 27 H -0.296 1.296 28 H -0.294 1.294 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.414 0.586 35 H 0.263 0.737 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.080 0.920 47 H -0.006 1.006 48 H 0.016 0.984 49 H 0.026 0.974 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.519 2.558 -9.814 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.047 3.953 3 H 0.088 0.912 4 C -0.015 4.015 5 N -0.335 5.335 6 C 0.377 3.623 7 O -0.461 6.461 8 C -0.220 4.220 9 C -0.048 4.048 10 O -0.073 6.073 11 C -0.005 4.005 12 C -0.010 4.010 13 C -0.146 4.146 14 C -0.153 4.153 15 C -0.155 4.155 16 C -0.154 4.154 17 C -0.150 4.150 18 N -0.214 5.214 19 N -0.326 5.326 20 C 0.039 3.961 21 C -0.391 4.391 22 H 0.088 0.912 23 C -0.236 4.236 24 N -0.573 5.573 25 Si 0.787 3.213 26 H -0.192 1.192 27 H -0.224 1.224 28 H -0.221 1.221 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.250 0.750 35 H 0.279 0.721 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.012 0.988 48 H 0.034 0.966 49 H 0.044 0.956 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.948 2.488 -9.796 16.426 hybrid contribution 0.360 -0.280 0.878 0.990 sum 13.308 2.208 -8.918 16.171 Atomic orbital electron populations 1.22041 0.94530 1.01816 1.02188 1.20869 0.94599 0.95415 0.84368 0.91192 1.22023 0.78977 1.00665 0.99845 1.45818 1.08674 1.56503 1.22476 1.17034 0.84745 0.77977 0.82545 1.90711 1.69346 1.51202 1.34872 1.21855 0.95603 1.09006 0.95578 1.25784 0.79197 0.99161 1.00649 1.84364 1.30166 1.59692 1.33104 1.26858 0.95287 0.93850 0.84477 1.20024 0.86639 0.98927 0.95381 1.21605 0.95720 0.98456 0.98802 1.21537 0.95811 0.98173 0.99801 1.21571 0.97922 0.95426 1.00565 1.21534 0.95017 1.00772 0.98090 1.21604 0.97374 0.94768 1.01248 1.70881 1.01677 1.22066 1.26782 1.44072 1.57725 1.09384 1.21386 1.20392 0.93892 0.84647 0.97191 1.19478 1.15693 0.91333 1.12547 0.91185 1.25623 0.98731 0.96647 1.02579 1.70256 1.39654 1.08621 1.38745 0.85355 0.77800 0.78462 0.79732 1.19181 1.22376 1.22140 0.92649 0.93122 0.90236 0.93437 0.90495 0.74980 0.72125 0.88265 0.90231 0.91804 0.91932 0.89737 0.90448 0.90930 0.92214 0.90300 0.93151 0.90160 0.98779 0.96554 0.95609 0.94781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.18 71.98 0.66 -3.97 16 2 C 0.15 6.03 2.87 44.99 0.13 6.15 16 3 H 0.07 2.70 7.87 -2.39 -0.02 2.69 16 4 C 0.11 4.28 4.97 86.38 0.43 4.71 16 5 N -0.69 -29.67 5.38 -466.38 -2.51 -32.18 16 6 C 0.59 24.86 7.81 86.66 0.68 25.54 16 7 O -0.58 -25.19 16.89 -4.07 -0.07 -25.26 16 8 C -0.10 -3.84 6.99 40.41 0.28 -3.56 16 9 C 0.03 0.76 11.95 67.32 0.80 1.56 16 10 O -0.19 -5.18 10.73 0.31 0.00 -5.17 16 11 C 0.21 6.37 6.81 88.39 0.60 6.97 16 12 C 0.01 0.24 2.66 -11.54 -0.03 0.20 16 13 C -0.11 -1.95 5.18 30.59 0.16 -1.79 16 14 C -0.12 -1.63 5.92 30.59 0.18 -1.45 16 15 C -0.12 -1.49 5.92 30.59 0.18 -1.31 16 16 C -0.12 -1.91 5.92 30.59 0.18 -1.73 16 17 C -0.11 -2.35 5.19 30.59 0.16 -2.19 16 18 N -0.49 -18.99 11.06 -293.03 -3.24 -22.23 16 19 N -0.60 -29.05 2.29 -702.79 -1.61 -30.65 16 20 C 0.18 9.20 8.11 127.77 1.04 10.24 16 21 C -0.26 -13.79 9.32 84.03 0.78 -13.01 16 22 H 0.07 3.62 7.82 -2.91 -0.02 3.60 16 23 C -0.04 -2.18 5.12 84.86 0.43 -1.75 16 24 N -0.93 -54.36 10.65 21.65 0.23 -54.13 16 25 Si 0.96 44.89 29.57 68.60 2.03 46.91 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 28 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 29 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.05 1.62 6.66 -2.39 -0.02 1.60 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 1.95 7.84 -2.39 -0.02 1.93 16 33 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 34 H 0.41 19.79 7.62 -92.71 -0.71 19.09 16 35 H 0.26 5.35 8.06 -2.91 -0.02 5.33 16 36 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 47 H -0.01 -0.35 7.41 -2.38 -0.02 -0.36 16 48 H 0.02 0.86 7.23 -2.39 -0.02 0.85 16 49 H 0.03 1.12 6.43 -2.38 -0.02 1.10 16 50 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -68.50 401.05 1.73 -66.77 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.22 Total: 31.32 kcal Atomic # 6 Polarization: 17.96 SS G_CDS: 6.67 Total: 24.62 kcal Atomic # 7 Polarization: -132.07 SS G_CDS: -7.13 Total: -139.20 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.07 Total: -30.43 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.50 1.73 -66.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628048.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.029 kcal (2) G-P(sol) polarization free energy of solvation -68.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds