Wall clock time and date at job start Tue Mar 31 2020 18:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47291 * 2 1 4 4 C 1.53005 * 109.47231 * 119.99989 * 2 1 3 5 5 N 1.46495 * 109.47039 * 174.99859 * 4 2 1 6 6 C 1.34780 * 120.00197 * 180.02562 * 5 4 2 7 7 O 1.21620 * 119.99459 * 359.97438 * 6 5 4 8 8 C 1.47411 * 120.00299 * 180.02562 * 6 5 4 9 9 C 1.36093 * 126.44587 * 180.02562 * 8 6 5 10 10 O 1.34258 * 106.94657 * 180.24105 * 9 8 6 11 11 C 1.34047 * 108.23029 * 359.57462 * 10 9 8 12 12 C 1.50703 * 125.38368 * 180.13055 * 11 10 9 13 13 C 1.53000 * 109.46678 * 60.35385 * 12 11 10 14 14 C 1.53001 * 109.46892 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47330 * 59.99802 * 14 13 12 16 16 C 1.53007 * 109.46915 * 300.00242 * 15 14 13 17 17 C 1.52997 * 109.47206 * 60.00101 * 16 15 14 18 18 N 1.29942 * 109.23860 * 0.43816 * 11 10 9 19 19 N 1.46500 * 109.46985 * 239.99866 * 2 1 3 20 20 C 1.46497 * 120.00230 * 300.00035 * 19 2 1 21 21 C 1.36943 * 120.00191 * 119.99966 * 19 2 1 22 22 H 1.08002 * 119.99470 * 23.10106 * 21 19 2 23 23 C 1.38807 * 120.00387 * 203.09574 * 21 19 2 24 24 N 1.31626 * 119.99582 * 13.00219 * 23 21 19 25 25 Si 1.86795 * 120.00324 * 193.00031 * 23 21 19 26 26 H 1.48498 * 109.46960 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46886 * 119.99988 * 25 23 21 28 28 H 1.48498 * 109.47298 * 240.00217 * 25 23 21 29 29 H 1.09001 * 109.47291 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47236 * 300.00310 * 1 2 3 31 31 H 1.08997 * 109.47385 * 60.00262 * 1 2 3 32 32 H 1.09000 * 109.46768 * 54.99610 * 4 2 1 33 33 H 1.09000 * 109.46747 * 295.00282 * 4 2 1 34 34 H 0.97004 * 120.00108 * 359.97438 * 5 4 2 35 35 H 1.07999 * 126.52802 * 359.97438 * 9 8 6 36 36 H 1.09003 * 109.47100 * 180.34956 * 12 11 10 37 37 H 1.09003 * 109.47004 * 299.99630 * 13 12 11 38 38 H 1.08991 * 109.47467 * 59.99960 * 13 12 11 39 39 H 1.08998 * 109.47115 * 300.00149 * 14 13 12 40 40 H 1.08996 * 109.47298 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.47033 * 180.02562 * 15 14 13 42 42 H 1.08996 * 109.47179 * 59.99838 * 15 14 13 43 43 H 1.09002 * 109.46606 * 299.99458 * 16 15 14 44 44 H 1.08998 * 109.46731 * 179.97438 * 16 15 14 45 45 H 1.08996 * 109.47185 * 180.02562 * 17 16 15 46 46 H 1.08998 * 109.47457 * 59.99508 * 17 16 15 47 47 H 1.08999 * 109.47350 * 95.12629 * 20 19 2 48 48 H 1.08999 * 109.47860 * 215.13003 * 20 19 2 49 49 H 1.09002 * 109.46911 * 335.12532 * 20 19 2 50 50 H 0.96996 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4292 2.1906 7 8 3.5682 -1.8854 3.1421 8 6 5.6422 -1.5345 2.1318 9 6 6.4492 -2.1129 3.0626 10 8 7.7105 -1.9855 2.6205 11 6 7.6789 -1.3514 1.4399 12 6 8.8829 -1.0097 0.6004 13 6 9.6177 -2.2954 0.2156 14 6 10.8404 -1.9485 -0.6362 15 6 11.7798 -1.0442 0.1644 16 6 11.0449 0.2414 0.5493 17 6 9.8222 -0.1055 1.4011 18 7 6.4466 -1.0721 1.1366 19 7 2.0182 -0.6906 -1.1962 20 6 1.6643 -2.0932 -1.4280 21 6 2.8055 -0.0252 -2.0976 22 1 3.3700 0.8410 -1.7854 23 6 2.8781 -0.4639 -3.4126 24 7 2.0107 -1.3468 -3.8605 25 14 4.2066 0.1986 -4.5463 26 1 5.0494 1.1714 -3.8058 27 1 5.0524 -0.9236 -5.0264 28 1 3.5745 0.8742 -5.7079 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9823 -0.4628 0.4315 35 1 6.1352 -2.5811 3.9838 36 1 8.5609 -0.4911 -0.3027 37 1 9.9397 -2.8140 1.1186 38 1 8.9484 -2.9397 -0.3544 39 1 10.5189 -1.4296 -1.5392 40 1 11.3642 -2.8643 -0.9100 41 1 12.6507 -0.7967 -0.4426 42 1 12.1014 -1.5630 1.0674 43 1 10.7234 0.7603 -0.3538 44 1 11.7140 0.8854 1.1200 45 1 9.2985 0.8103 1.6748 46 1 10.1438 -0.6244 2.3040 47 1 0.7890 -2.1448 -2.0754 48 1 2.5000 -2.6048 -1.9054 49 1 1.4406 -2.5737 -0.4755 50 1 2.0612 -1.6531 -4.7794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329628049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:29 Heat of formation + Delta-G solvation = -17.780062 kcal Electronic energy + Delta-G solvation = -29705.910232 eV Core-core repulsion = 25734.518591 eV Total energy + Delta-G solvation = -3971.391641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.42620 -39.17709 -38.70286 -36.68480 -34.82100 -33.70720 -32.50272 -31.88253 -31.08709 -29.39273 -29.09925 -26.17559 -25.98248 -23.86293 -23.53785 -22.91538 -22.84220 -21.16379 -20.45087 -19.67801 -19.19656 -17.82621 -16.89795 -16.72345 -16.32195 -15.92948 -15.49416 -15.27230 -14.74108 -14.53817 -14.49910 -14.44850 -13.94755 -13.87218 -13.40832 -12.90326 -12.83670 -12.72329 -12.69317 -12.52253 -12.27318 -12.01629 -11.55437 -11.47493 -11.40819 -11.20396 -11.05377 -10.85983 -10.81177 -10.73272 -10.70180 -10.62012 -10.47820 -10.38118 -10.23567 -9.86176 -9.84024 -9.73970 -9.00300 -8.55836 -8.47487 -6.75870 -5.70860 -3.18158 1.17557 2.11177 2.55483 3.38225 3.45489 3.46632 3.47765 3.59630 3.82880 4.37989 4.42364 4.49703 4.58966 4.81339 4.92304 4.92447 5.05175 5.13383 5.15250 5.18818 5.32489 5.40570 5.42539 5.45325 5.59481 5.61578 5.65845 5.73002 5.78941 5.82936 5.83240 5.89762 5.94542 5.98303 6.08264 6.13662 6.14777 6.21711 6.33188 6.45904 6.78041 6.86595 6.88949 7.04451 7.41214 7.53223 7.76100 7.82237 8.07303 8.40179 8.58730 9.24319 9.87257 10.36489 11.33483 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.003777 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.165036 B = 7412.003968 C = 9678.357238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.104 3.896 5 N -0.684 5.684 6 C 0.593 3.407 7 O -0.557 6.557 8 C -0.061 4.061 9 C -0.001 4.001 10 O -0.197 6.197 11 C 0.200 3.800 12 C 0.010 3.990 13 C -0.116 4.116 14 C -0.119 4.119 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.115 4.115 18 N -0.448 5.448 19 N -0.593 5.593 20 C 0.165 3.835 21 C -0.256 4.256 22 H 0.069 0.931 23 C 0.006 3.994 24 N -0.904 5.904 25 Si 0.901 3.099 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.292 1.292 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.420 0.580 35 H 0.229 0.771 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.030 0.970 48 H 0.038 0.962 49 H -0.002 1.002 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.492 0.234 11.282 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.021 4.021 5 N -0.333 5.333 6 C 0.377 3.623 7 O -0.437 6.437 8 C -0.181 4.181 9 C -0.075 4.075 10 O -0.083 6.083 11 C -0.009 4.009 12 C -0.009 4.009 13 C -0.154 4.154 14 C -0.156 4.156 15 C -0.160 4.160 16 C -0.156 4.156 17 C -0.153 4.153 18 N -0.177 5.177 19 N -0.316 5.316 20 C 0.020 3.980 21 C -0.385 4.385 22 H 0.086 0.914 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.731 3.269 26 H -0.202 1.202 27 H -0.217 1.217 28 H -0.219 1.219 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.258 0.742 35 H 0.245 0.755 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.016 0.984 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.840 0.166 11.190 19.394 hybrid contribution 0.819 -0.022 -0.489 0.954 sum 16.659 0.144 10.701 19.801 Atomic orbital electron populations 1.22180 0.97353 1.01385 1.00603 1.20620 0.92631 0.95571 0.86332 0.91294 1.22047 0.79069 1.01500 0.99516 1.45759 1.08363 1.56514 1.22690 1.16776 0.83693 0.78730 0.83077 1.90770 1.68558 1.50129 1.34200 1.21933 0.96184 1.06028 0.93962 1.25215 0.79735 1.01558 1.00968 1.84335 1.30492 1.60061 1.33422 1.26274 0.95286 0.95159 0.84218 1.19861 0.87151 0.97835 0.96088 1.21632 0.97164 0.95804 1.00829 1.21531 0.95566 0.99961 0.98575 1.21583 0.98083 0.96085 1.00202 1.21531 0.96348 0.97600 1.00117 1.21627 0.95753 0.99354 0.98573 1.70896 1.00346 1.20420 1.26063 1.43975 1.58176 1.08007 1.21434 1.20720 0.99756 0.83384 0.94103 1.19229 1.18572 1.11548 0.89198 0.91355 1.24997 0.98265 0.99468 0.96574 1.70085 1.35149 1.34367 1.15306 0.86232 0.81579 0.78217 0.80838 1.20179 1.21722 1.21884 0.93150 0.93964 0.92135 0.91854 0.92215 0.74233 0.75526 0.86543 0.91169 0.90954 0.91314 0.91406 0.91784 0.91869 0.91352 0.91467 0.91142 0.91157 0.95136 0.94292 0.98360 0.93889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.19 37.15 0.34 -2.46 16 2 C 0.16 3.14 2.87 -67.93 -0.19 2.94 16 3 H 0.07 1.37 7.87 -51.93 -0.41 0.96 16 4 C 0.10 1.94 4.93 -4.04 -0.02 1.92 16 5 N -0.68 -13.17 5.38 -61.38 -0.33 -13.50 16 6 C 0.59 11.15 7.81 -12.52 -0.10 11.06 16 7 O -0.56 -11.27 16.89 5.26 0.09 -11.18 16 8 C -0.06 -1.01 6.99 -83.03 -0.58 -1.59 16 9 C 0.00 -0.01 11.95 29.96 0.36 0.34 16 10 O -0.20 -2.51 10.73 6.52 0.07 -2.44 16 11 C 0.20 2.71 6.81 -13.08 -0.09 2.62 16 12 C 0.01 0.10 2.66 -91.77 -0.24 -0.14 16 13 C -0.12 -1.05 5.19 -26.73 -0.14 -1.19 16 14 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 15 C -0.12 -0.80 5.92 -26.73 -0.16 -0.95 16 16 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 17 C -0.11 -0.96 5.18 -26.73 -0.14 -1.10 16 18 N -0.45 -7.49 11.06 -7.66 -0.08 -7.58 16 19 N -0.59 -14.29 2.28 -173.49 -0.40 -14.69 16 20 C 0.16 4.07 8.00 59.85 0.48 4.55 16 21 C -0.26 -6.78 9.31 -15.06 -0.14 -6.92 16 22 H 0.07 1.77 7.82 -52.49 -0.41 1.36 16 23 C 0.01 0.15 5.10 -17.43 -0.09 0.06 16 24 N -0.90 -26.11 10.72 55.49 0.59 -25.52 16 25 Si 0.90 21.63 29.57 -169.99 -5.03 16.60 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 29 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.24 6.86 -51.93 -0.36 0.88 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.42 8.60 7.62 -40.82 -0.31 8.29 16 35 H 0.23 2.26 8.06 -52.49 -0.42 1.84 16 36 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.03 0.81 7.34 -51.93 -0.38 0.43 16 48 H 0.04 1.05 7.35 -51.93 -0.38 0.66 16 49 H 0.00 -0.05 6.53 -51.93 -0.34 -0.39 16 50 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 401.15 15.07 6.05 6.05 Total: -1.00 -31.34 401.15 -8.53 -39.87 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.46 Total: 5.26 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -1.03 Total: 7.12 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.22 Total: -61.29 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.16 Total: -13.61 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.34 -8.53 -39.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.094 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds