Wall clock time and date at job start Tue Mar 31 2020 18:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47291 * 2 1 4 4 C 1.53005 * 109.47231 * 119.99989 * 2 1 3 5 5 N 1.46495 * 109.47039 * 174.99859 * 4 2 1 6 6 C 1.34780 * 120.00197 * 180.02562 * 5 4 2 7 7 O 1.21620 * 119.99459 * 359.97438 * 6 5 4 8 8 C 1.47411 * 120.00299 * 180.02562 * 6 5 4 9 9 C 1.36093 * 126.44587 * 180.02562 * 8 6 5 10 10 O 1.34258 * 106.94657 * 180.24105 * 9 8 6 11 11 C 1.34047 * 108.23029 * 359.57462 * 10 9 8 12 12 C 1.50703 * 125.38368 * 180.13055 * 11 10 9 13 13 C 1.53000 * 109.46678 * 60.35385 * 12 11 10 14 14 C 1.53001 * 109.46892 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.47330 * 59.99802 * 14 13 12 16 16 C 1.53007 * 109.46915 * 300.00242 * 15 14 13 17 17 C 1.52997 * 109.47206 * 60.00101 * 16 15 14 18 18 N 1.29942 * 109.23860 * 0.43816 * 11 10 9 19 19 N 1.46500 * 109.46985 * 239.99866 * 2 1 3 20 20 C 1.46497 * 120.00230 * 300.00035 * 19 2 1 21 21 C 1.36943 * 120.00191 * 119.99966 * 19 2 1 22 22 H 1.08002 * 119.99470 * 23.10106 * 21 19 2 23 23 C 1.38807 * 120.00387 * 203.09574 * 21 19 2 24 24 N 1.31626 * 119.99582 * 13.00219 * 23 21 19 25 25 Si 1.86795 * 120.00324 * 193.00031 * 23 21 19 26 26 H 1.48498 * 109.46960 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46886 * 119.99988 * 25 23 21 28 28 H 1.48498 * 109.47298 * 240.00217 * 25 23 21 29 29 H 1.09001 * 109.47291 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47236 * 300.00310 * 1 2 3 31 31 H 1.08997 * 109.47385 * 60.00262 * 1 2 3 32 32 H 1.09000 * 109.46768 * 54.99610 * 4 2 1 33 33 H 1.09000 * 109.46747 * 295.00282 * 4 2 1 34 34 H 0.97004 * 120.00108 * 359.97438 * 5 4 2 35 35 H 1.07999 * 126.52802 * 359.97438 * 9 8 6 36 36 H 1.09003 * 109.47100 * 180.34956 * 12 11 10 37 37 H 1.09003 * 109.47004 * 299.99630 * 13 12 11 38 38 H 1.08991 * 109.47467 * 59.99960 * 13 12 11 39 39 H 1.08998 * 109.47115 * 300.00149 * 14 13 12 40 40 H 1.08996 * 109.47298 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.47033 * 180.02562 * 15 14 13 42 42 H 1.08996 * 109.47179 * 59.99838 * 15 14 13 43 43 H 1.09002 * 109.46606 * 299.99458 * 16 15 14 44 44 H 1.08998 * 109.46731 * 179.97438 * 16 15 14 45 45 H 1.08996 * 109.47185 * 180.02562 * 17 16 15 46 46 H 1.08998 * 109.47457 * 59.99508 * 17 16 15 47 47 H 1.08999 * 109.47350 * 95.12629 * 20 19 2 48 48 H 1.08999 * 109.47860 * 215.13003 * 20 19 2 49 49 H 1.09002 * 109.46911 * 335.12532 * 20 19 2 50 50 H 0.96996 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4292 2.1906 7 8 3.5682 -1.8854 3.1421 8 6 5.6422 -1.5345 2.1318 9 6 6.4492 -2.1129 3.0626 10 8 7.7105 -1.9855 2.6205 11 6 7.6789 -1.3514 1.4399 12 6 8.8829 -1.0097 0.6004 13 6 9.6177 -2.2954 0.2156 14 6 10.8404 -1.9485 -0.6362 15 6 11.7798 -1.0442 0.1644 16 6 11.0449 0.2414 0.5493 17 6 9.8222 -0.1055 1.4011 18 7 6.4466 -1.0721 1.1366 19 7 2.0182 -0.6906 -1.1962 20 6 1.6643 -2.0932 -1.4280 21 6 2.8055 -0.0252 -2.0976 22 1 3.3700 0.8410 -1.7854 23 6 2.8781 -0.4639 -3.4126 24 7 2.0107 -1.3468 -3.8605 25 14 4.2066 0.1986 -4.5463 26 1 5.0494 1.1714 -3.8058 27 1 5.0524 -0.9236 -5.0264 28 1 3.5745 0.8742 -5.7079 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.9823 -0.4628 0.4315 35 1 6.1352 -2.5811 3.9838 36 1 8.5609 -0.4911 -0.3027 37 1 9.9397 -2.8140 1.1186 38 1 8.9484 -2.9397 -0.3544 39 1 10.5189 -1.4296 -1.5392 40 1 11.3642 -2.8643 -0.9100 41 1 12.6507 -0.7967 -0.4426 42 1 12.1014 -1.5630 1.0674 43 1 10.7234 0.7603 -0.3538 44 1 11.7140 0.8854 1.1200 45 1 9.2985 0.8103 1.6748 46 1 10.1438 -0.6244 2.3040 47 1 0.7890 -2.1448 -2.0754 48 1 2.5000 -2.6048 -1.9054 49 1 1.4406 -2.5737 -0.4755 50 1 2.0612 -1.6531 -4.7794 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329628049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:28 Heat of formation + Delta-G solvation = -38.080312 kcal Electronic energy + Delta-G solvation = -29706.790517 eV Core-core repulsion = 25734.518591 eV Total energy + Delta-G solvation = -3972.271926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.53021 -40.63476 -39.40910 -38.42293 -35.99487 -35.41915 -33.72805 -33.26953 -31.71772 -31.19553 -30.17326 -28.03836 -27.59071 -25.15160 -24.69837 -24.42696 -23.54680 -22.21373 -21.50134 -21.04041 -20.42508 -19.10697 -18.81975 -17.83817 -17.51822 -17.20038 -17.04082 -16.56279 -16.17240 -15.63371 -15.57364 -15.46876 -15.12061 -15.02558 -14.71912 -14.54580 -14.45221 -13.92844 -13.60263 -13.58172 -13.52607 -13.15470 -13.08268 -12.88851 -12.69819 -12.57991 -12.41658 -12.30226 -12.23732 -12.08839 -12.05424 -11.88056 -11.80893 -11.52589 -11.44429 -11.35847 -11.19800 -11.13842 -10.63812 -10.20247 -9.90849 -8.78346 -7.79870 -5.28179 0.04431 0.92208 1.45765 1.48002 1.51681 1.57692 2.13380 2.24066 2.51846 2.74940 3.35138 3.59158 3.65045 3.66668 3.74454 3.84034 4.00673 4.04603 4.23037 4.29017 4.33685 4.41009 4.47462 4.51214 4.55976 4.56239 4.59258 4.67238 4.70110 4.73932 4.86363 4.92933 5.02377 5.04328 5.08800 5.12915 5.20908 5.23011 5.23048 5.31425 5.36903 5.37710 5.39280 5.51731 5.55605 5.67573 5.71824 6.34088 6.34711 6.62329 7.08712 7.17471 7.87750 8.32808 9.23472 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009550 B = 0.003777 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2931.165036 B = 7412.003968 C = 9678.357238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.155 3.845 3 H 0.071 0.929 4 C 0.114 3.886 5 N -0.691 5.691 6 C 0.593 3.407 7 O -0.575 6.575 8 C -0.102 4.102 9 C 0.029 3.971 10 O -0.188 6.188 11 C 0.208 3.792 12 C 0.008 3.992 13 C -0.112 4.112 14 C -0.117 4.117 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.109 4.109 18 N -0.487 5.487 19 N -0.603 5.603 20 C 0.186 3.814 21 C -0.254 4.254 22 H 0.073 0.927 23 C -0.049 4.049 24 N -0.937 5.937 25 Si 0.960 3.040 26 H -0.264 1.264 27 H -0.296 1.296 28 H -0.294 1.294 29 H 0.045 0.955 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.413 0.587 35 H 0.262 0.738 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.063 0.937 46 H 0.077 0.923 47 H 0.006 0.994 48 H 0.007 0.993 49 H 0.019 0.981 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.461 0.818 12.928 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.048 3.952 3 H 0.089 0.911 4 C -0.012 4.012 5 N -0.340 5.340 6 C 0.379 3.621 7 O -0.457 6.457 8 C -0.221 4.221 9 C -0.045 4.045 10 O -0.073 6.073 11 C -0.002 4.002 12 C -0.011 4.011 13 C -0.150 4.150 14 C -0.155 4.155 15 C -0.156 4.156 16 C -0.154 4.154 17 C -0.147 4.147 18 N -0.216 5.216 19 N -0.326 5.326 20 C 0.041 3.959 21 C -0.384 4.384 22 H 0.091 0.909 23 C -0.244 4.244 24 N -0.584 5.584 25 Si 0.789 3.211 26 H -0.188 1.188 27 H -0.223 1.223 28 H -0.222 1.222 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.249 0.751 35 H 0.278 0.722 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.024 0.976 48 H 0.026 0.974 49 H 0.038 0.962 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 17.804 0.777 12.870 21.983 hybrid contribution 0.231 -0.201 -0.906 0.957 sum 18.036 0.576 11.964 21.651 Atomic orbital electron populations 1.22051 0.95526 1.01441 1.01551 1.20802 0.93944 0.95389 0.85043 0.91053 1.21929 0.78913 1.00967 0.99361 1.45816 1.08529 1.56927 1.22698 1.17014 0.84671 0.77917 0.82452 1.90743 1.69312 1.50926 1.34688 1.21798 0.95445 1.09076 0.95754 1.25799 0.79161 0.98885 1.00656 1.84380 1.30159 1.59696 1.33093 1.26854 0.95257 0.93843 0.84239 1.20062 0.86585 0.98895 0.95552 1.21615 0.97392 0.94805 1.01236 1.21535 0.95060 1.00681 0.98184 1.21576 0.98014 0.95529 1.00510 1.21535 0.95843 0.98116 0.99868 1.21607 0.95775 0.98559 0.98781 1.70839 1.01640 1.22092 1.27069 1.44104 1.58373 1.07924 1.22215 1.20360 0.97324 0.84001 0.94239 1.19530 1.18271 1.11085 0.89484 0.90910 1.25688 1.00282 1.00323 0.98125 1.70238 1.36884 1.36083 1.15222 0.85295 0.79297 0.77537 0.78940 1.18777 1.22338 1.22174 0.93556 0.90225 0.93896 0.92811 0.90080 0.75084 0.72246 0.87593 0.90373 0.92561 0.91883 0.90427 0.90648 0.91144 0.91736 0.90059 0.91787 0.90427 0.97563 0.97397 0.96209 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 9.19 71.98 0.66 -4.41 16 2 C 0.16 6.07 2.87 44.99 0.13 6.20 16 3 H 0.07 2.76 7.87 -2.39 -0.02 2.74 16 4 C 0.11 4.10 4.93 86.38 0.43 4.53 16 5 N -0.69 -26.49 5.38 -466.37 -2.51 -29.00 16 6 C 0.59 22.09 7.81 86.66 0.68 22.76 16 7 O -0.57 -22.75 16.89 -4.10 -0.07 -22.82 16 8 C -0.10 -3.34 6.99 40.41 0.28 -3.06 16 9 C 0.03 0.72 11.95 67.32 0.80 1.53 16 10 O -0.19 -4.43 10.73 0.40 0.00 -4.42 16 11 C 0.21 5.47 6.81 88.39 0.60 6.07 16 12 C 0.01 0.17 2.66 -11.54 -0.03 0.14 16 13 C -0.11 -1.90 5.19 30.59 0.16 -1.74 16 14 C -0.12 -1.54 5.92 30.60 0.18 -1.36 16 15 C -0.12 -1.25 5.92 30.60 0.18 -1.07 16 16 C -0.12 -1.36 5.92 30.60 0.18 -1.17 16 17 C -0.11 -1.65 5.18 30.59 0.16 -1.49 16 18 N -0.49 -16.29 11.06 -293.04 -3.24 -19.53 16 19 N -0.60 -29.29 2.28 -702.79 -1.61 -30.90 16 20 C 0.19 9.39 8.00 127.77 1.02 10.41 16 21 C -0.25 -13.53 9.31 84.03 0.78 -12.74 16 22 H 0.07 3.76 7.82 -2.91 -0.02 3.74 16 23 C -0.05 -2.73 5.10 84.86 0.43 -2.30 16 24 N -0.94 -55.61 10.72 21.65 0.23 -55.37 16 25 Si 0.96 45.13 29.57 68.60 2.03 47.16 16 26 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 29 H 0.05 1.63 7.67 -2.39 -0.02 1.61 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 2.05 6.86 -2.39 -0.02 2.03 16 33 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.41 17.08 7.62 -92.71 -0.71 16.37 16 35 H 0.26 4.40 8.06 -2.91 -0.02 4.37 16 36 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.01 0.34 7.34 -2.39 -0.02 0.32 16 48 H 0.01 0.41 7.35 -2.39 -0.02 0.39 16 49 H 0.02 0.89 6.53 -2.39 -0.02 0.87 16 50 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -68.33 401.15 1.71 -66.62 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.22 Total: 25.97 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 6.65 Total: 22.29 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -7.12 Total: -134.80 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.06 Total: -27.24 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -68.33 1.71 -66.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329628049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.540 kcal (2) G-P(sol) polarization free energy of solvation -68.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds