Wall clock time and date at job start Tue Mar 31 2020 19:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46495 * 109.46900 * 2 1 4 4 C 1.46502 * 120.00141 * 270.00110 * 3 2 1 5 5 C 1.53005 * 109.47176 * 270.00069 * 4 3 2 6 6 O 1.42896 * 109.46752 * 65.00212 * 5 4 3 7 7 C 1.42901 * 113.99762 * 180.02562 * 6 5 4 8 8 C 1.39004 * 119.99967 * 90.00337 * 3 2 1 9 9 C 1.39134 * 119.70584 * 5.02196 * 8 3 2 10 10 C 1.38294 * 119.09708 * 179.97438 * 9 8 3 11 11 C 1.38888 * 118.50581 * 359.75037 * 10 9 8 12 12 C 1.38020 * 119.33028 * 0.49126 * 11 10 9 13 13 C 1.50697 * 119.57366 * 179.77589 * 12 11 10 14 14 N 1.46895 * 109.47143 * 94.72606 * 13 12 11 15 15 C 1.47961 * 111.00270 * 170.00071 * 14 13 12 16 16 C 1.53934 * 86.18427 * 222.41862 * 15 14 13 17 17 O 1.42895 * 113.73076 * 269.25870 * 16 15 14 18 18 C 1.50696 * 113.73266 * 138.07361 * 16 15 14 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 16 15 20 20 C 1.37885 * 119.99717 * 179.97438 * 18 16 15 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 16 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47958 * 110.99863 * 70.64193 * 14 13 12 27 27 N 1.31971 * 120.85430 * 359.49881 * 12 11 10 28 28 H 1.09006 * 109.46911 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46853 * 299.99527 * 1 2 3 30 30 H 1.09004 * 109.47519 * 59.99892 * 1 2 3 31 31 H 1.09007 * 109.46989 * 240.00541 * 2 1 3 32 32 H 1.08992 * 109.47133 * 120.00252 * 2 1 3 33 33 H 1.09003 * 109.47218 * 30.00032 * 4 3 2 34 34 H 1.08999 * 109.47366 * 150.00140 * 4 3 2 35 35 H 1.09001 * 109.46681 * 185.00049 * 5 4 3 36 36 H 1.08994 * 109.46764 * 304.99785 * 5 4 3 37 37 H 1.09000 * 109.47150 * 179.97438 * 7 6 5 38 38 H 1.09007 * 109.46849 * 299.99701 * 7 6 5 39 39 H 1.08998 * 109.47379 * 59.99822 * 7 6 5 40 40 H 1.08003 * 120.44939 * 359.97438 * 9 8 3 41 41 H 1.07998 * 120.74580 * 179.97438 * 10 9 8 42 42 H 1.08005 * 120.33411 * 180.26942 * 11 10 9 43 43 H 1.09005 * 109.46817 * 334.72704 * 13 12 11 44 44 H 1.08999 * 109.46747 * 214.73116 * 13 12 11 45 45 H 1.08996 * 113.76309 * 108.09300 * 15 14 13 46 46 H 1.09009 * 113.75512 * 336.73575 * 15 14 13 47 47 H 0.96697 * 114.00066 * 178.10080 * 17 16 15 48 48 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 49 49 H 1.08993 * 113.76569 * 23.26601 * 26 14 13 50 50 H 1.09005 * 113.75789 * 251.89882 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7105 6 8 3.8943 0.4434 -1.9937 7 6 5.2178 0.1095 -2.4166 8 6 2.2500 2.0364 1.2038 9 6 2.1172 1.3432 2.4028 10 6 2.3513 2.0073 3.5931 11 6 2.7168 3.3463 3.5442 12 6 2.8251 3.9734 2.3195 13 6 3.2164 5.4274 2.2603 14 7 4.6676 5.5362 2.0601 15 6 5.0583 6.9312 1.7592 16 6 5.9903 6.3311 0.6911 17 8 7.3052 6.0437 1.1711 18 6 5.9930 7.0933 -0.6089 19 1 5.3765 7.9729 -0.7204 20 6 6.7835 6.6682 -1.6556 21 7 6.7862 7.3336 -2.7900 22 14 7.8504 5.1471 -1.4624 23 1 9.1841 5.5408 -0.9413 24 1 7.2049 4.2072 -0.5109 25 1 8.0104 4.4840 -2.7815 26 6 5.0475 5.1142 0.6938 27 7 2.5957 3.3146 1.1992 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6877 -2.0284 34 1 2.0954 3.1411 -1.1384 35 1 3.9155 2.4164 -2.6064 36 1 4.3862 2.1343 -0.9132 37 1 5.2777 -0.9613 -2.6112 38 1 5.4576 0.6587 -3.3271 39 1 5.9276 0.3764 -1.6337 40 1 1.8352 0.3007 2.4040 41 1 2.2555 1.4953 4.5391 42 1 2.9109 3.8924 4.4557 43 1 2.9409 5.9161 3.1949 44 1 2.6981 5.9097 1.4316 45 1 5.5859 7.4253 2.5750 46 1 4.2494 7.5346 1.3472 47 1 7.8852 5.6397 0.5112 48 1 7.3426 7.0347 -3.5262 49 1 4.2356 5.1861 -0.0298 50 1 5.5666 4.1564 0.6585 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363783966.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:18 Heat of formation + Delta-G solvation = 8.829852 kcal Electronic energy + Delta-G solvation = -30762.488713 eV Core-core repulsion = 26792.250965 eV Total energy + Delta-G solvation = -3970.237748 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.37025 -39.16614 -38.06651 -36.62601 -34.87134 -32.63042 -32.40972 -31.76811 -31.20057 -28.98785 -27.72846 -26.32469 -25.83301 -25.29527 -23.76384 -23.40259 -22.60871 -21.16467 -20.26050 -19.01866 -17.47641 -17.27794 -16.66188 -16.21465 -16.15535 -15.85062 -15.54883 -15.33874 -15.03028 -14.77700 -14.56420 -14.23631 -13.94840 -13.62485 -13.28470 -13.11612 -12.94954 -12.78847 -12.60012 -12.53709 -12.20890 -11.99769 -11.95349 -11.90600 -11.81371 -11.53810 -11.22980 -11.07637 -10.95025 -10.90008 -10.52779 -10.47358 -9.97029 -9.92109 -9.64498 -9.54578 -9.17088 -9.10385 -8.84929 -8.52798 -7.95969 -7.40580 -6.31481 -4.34160 1.44832 1.67416 2.95324 3.06240 3.14325 3.19642 3.80141 4.05307 4.13802 4.47737 4.73453 4.85173 4.87652 4.97788 5.04346 5.09959 5.22683 5.22930 5.25878 5.34524 5.35069 5.42015 5.45399 5.47511 5.58026 5.61533 5.65956 5.67911 5.70534 5.77223 5.81932 5.89176 5.97730 6.01793 6.06484 6.06896 6.25823 6.34284 6.47515 6.52505 6.72703 6.74508 6.95777 7.02190 7.10060 7.12954 7.37014 7.52729 7.78415 8.16562 8.41167 8.71221 8.72045 9.28825 10.81267 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010236 B = 0.004839 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.826779 B = 5785.064547 C = 7651.794322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.125 3.875 3 N -0.602 5.602 4 C 0.135 3.865 5 C 0.042 3.958 6 O -0.392 6.392 7 C 0.032 3.968 8 C 0.405 3.595 9 C -0.248 4.248 10 C -0.038 4.038 11 C -0.219 4.219 12 C 0.196 3.804 13 C 0.065 3.935 14 N -0.473 5.473 15 C 0.025 3.975 16 C 0.197 3.803 17 O -0.552 6.552 18 C -0.533 4.533 19 H 0.086 0.914 20 C 0.080 3.920 21 N -0.883 5.883 22 Si 0.856 3.144 23 H -0.268 1.268 24 H -0.255 1.255 25 H -0.287 1.287 26 C -0.010 4.010 27 N -0.532 5.532 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.346 0.654 48 H 0.268 0.732 49 H 0.079 0.921 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.982 -15.236 5.778 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.316 5.316 4 C 0.012 3.988 5 C -0.036 4.036 6 O -0.311 6.311 7 C -0.065 4.065 8 C 0.171 3.829 9 C -0.273 4.273 10 C -0.064 4.064 11 C -0.242 4.242 12 C 0.057 3.943 13 C -0.064 4.064 14 N -0.196 5.196 15 C -0.104 4.104 16 C 0.156 3.844 17 O -0.362 6.362 18 C -0.570 4.570 19 H 0.104 0.896 20 C -0.124 4.124 21 N -0.520 5.520 22 Si 0.685 3.315 23 H -0.195 1.195 24 H -0.180 1.180 25 H -0.214 1.214 26 C -0.140 4.140 27 N -0.249 5.249 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.100 0.900 46 H 0.093 0.907 47 H 0.198 0.802 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.002 -15.095 5.762 19.547 hybrid contribution 0.623 -0.974 -0.502 1.260 sum -10.379 -16.069 5.260 19.839 Atomic orbital electron populations 1.22239 0.96627 1.01727 1.02378 1.21428 0.93351 0.81722 1.03296 1.46348 1.70038 1.12889 1.02280 1.21403 0.93868 0.99035 0.84499 1.23120 0.98540 0.82100 0.99866 1.87784 1.29875 1.25579 1.87883 1.22701 0.84380 1.00862 0.98535 1.18295 0.90352 0.88365 0.85857 1.21325 1.12864 1.01036 0.92041 1.21225 0.93592 0.94025 0.97514 1.21570 1.08026 0.95854 0.98785 1.20726 0.90643 0.95441 0.87501 1.21569 0.92568 0.90211 1.02023 1.68657 1.10664 1.12440 1.27851 1.24019 0.97662 0.90478 0.98217 1.20538 0.80201 0.91136 0.92539 1.86461 1.24057 1.83871 1.41822 1.21403 1.27323 1.13520 0.94803 0.89615 1.24963 0.96055 0.96267 0.95152 1.69877 1.39341 1.39208 1.03566 0.87366 0.81846 0.84453 0.77807 1.19487 1.17981 1.21424 1.24882 0.99988 1.00354 0.88739 1.66958 1.19160 1.07224 1.31605 0.91876 0.92581 0.92477 0.89546 0.90992 0.90601 0.87860 0.92309 0.92611 0.89971 0.94073 0.94245 0.85570 0.85504 0.85416 0.89770 0.92501 0.90018 0.90709 0.80237 0.92216 0.90320 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.24 37.16 0.38 -1.09 16 2 C 0.13 1.27 5.79 -4.04 -0.02 1.25 16 3 N -0.60 -7.87 2.55 -173.83 -0.44 -8.31 16 4 C 0.14 1.80 5.88 -4.04 -0.02 1.77 16 5 C 0.04 0.61 6.28 37.16 0.23 0.84 16 6 O -0.39 -5.38 9.53 -35.23 -0.34 -5.72 16 7 C 0.03 0.38 11.01 101.05 1.11 1.49 16 8 C 0.41 6.06 7.37 -155.01 -1.14 4.91 16 9 C -0.25 -3.22 9.27 -39.23 -0.36 -3.59 16 10 C -0.04 -0.47 10.17 -39.32 -0.40 -0.87 16 11 C -0.22 -3.12 9.71 -39.42 -0.38 -3.51 16 12 C 0.20 3.23 5.96 -82.61 -0.49 2.73 16 13 C 0.07 1.10 5.13 -4.98 -0.03 1.07 16 14 N -0.47 -9.51 6.25 -239.68 -1.50 -11.01 16 15 C 0.02 0.51 7.36 -2.77 -0.02 0.49 16 16 C 0.20 4.79 1.05 -90.84 -0.10 4.69 16 17 O -0.55 -13.96 13.32 -35.23 -0.47 -14.43 16 18 C -0.53 -14.62 9.20 -34.44 -0.32 -14.94 16 19 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 20 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 21 N -0.88 -25.81 13.96 55.43 0.77 -25.04 16 22 Si 0.86 20.35 24.34 -169.99 -4.14 16.22 16 23 H -0.27 -6.21 7.06 56.52 0.40 -5.81 16 24 H -0.25 -5.89 5.28 56.52 0.30 -5.59 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.01 -0.23 5.70 -2.76 -0.02 -0.25 16 27 N -0.53 -8.99 8.53 -8.67 -0.07 -9.07 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.89 7.12 -51.92 -0.37 0.52 16 32 H 0.07 0.69 5.98 -51.93 -0.31 0.38 16 33 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.10 1.51 7.30 -51.93 -0.38 1.13 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.13 1.35 6.03 -52.48 -0.32 1.03 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 44 H 0.06 0.98 7.69 -51.93 -0.40 0.59 16 45 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 46 H 0.07 1.47 7.74 -51.92 -0.40 1.07 16 47 H 0.35 8.47 3.31 45.56 0.15 8.62 16 48 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.08 1.79 7.73 -51.93 -0.40 1.39 16 50 H 0.06 1.50 6.98 -51.93 -0.36 1.13 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -31.20 395.25 -9.84 -41.04 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -7.94 Total: 13.22 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -1.67 Total: -2.87 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -1.24 Total: -53.42 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.80 Total: -20.15 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.14 Total: 16.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.20 -9.84 -41.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363783966.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.875 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds