Wall clock time and date at job start Tue Mar 31 2020 19:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47278 * 2 1 4 4 N 1.46497 * 109.47029 * 120.00138 * 2 1 3 5 5 C 1.36944 * 120.00210 * 297.13254 * 4 2 1 6 6 H 1.07996 * 119.99929 * 38.92754 * 5 4 2 7 7 C 1.38810 * 120.00204 * 218.93920 * 5 4 2 8 8 N 1.31626 * 119.99839 * 20.84374 * 7 5 4 9 9 Si 1.86797 * 120.00167 * 200.84745 * 7 5 4 10 10 H 1.48500 * 109.46807 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47346 * 119.99580 * 9 7 5 12 12 H 1.48498 * 109.47241 * 239.99772 * 9 7 5 13 13 C 1.46502 * 120.00510 * 117.12988 * 4 2 1 14 14 C 1.52998 * 109.47152 * 270.00460 * 13 4 2 15 15 C 1.53002 * 109.46997 * 179.97438 * 14 13 4 16 16 N 1.46497 * 109.46943 * 179.97438 * 15 14 13 17 17 C 1.34779 * 120.00164 * 179.97438 * 16 15 14 18 18 O 1.21280 * 119.99606 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00413 * 180.02562 * 17 16 15 20 20 H 1.09008 * 109.47257 * 305.00275 * 19 17 16 21 21 C 1.53000 * 109.47332 * 65.00044 * 19 17 16 22 22 O 1.42895 * 109.47515 * 185.00188 * 19 17 16 23 23 C 1.35915 * 117.00248 * 154.80133 * 22 19 17 24 24 C 1.39135 * 120.47140 * 5.39857 * 23 22 19 25 25 C 1.38533 * 118.37219 * 180.02562 * 24 23 22 26 26 C 1.38267 * 119.22479 * 0.02562 * 25 24 23 27 27 N 1.31847 * 120.88300 * 359.97438 * 26 25 24 28 28 C 1.31842 * 121.77897 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.46713 * 305.46820 * 1 2 3 30 30 H 1.09000 * 109.47030 * 65.46854 * 1 2 3 31 31 H 1.09001 * 109.47567 * 185.46893 * 1 2 3 32 32 H 1.08994 * 109.47075 * 239.99770 * 2 1 3 33 33 H 1.08998 * 109.46970 * 183.32411 * 3 2 1 34 34 H 1.09002 * 109.47060 * 303.32308 * 3 2 1 35 35 H 1.09001 * 109.47247 * 63.32234 * 3 2 1 36 36 H 0.97002 * 119.99689 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47238 * 149.99632 * 13 4 2 38 38 H 1.09007 * 109.46493 * 29.99891 * 13 4 2 39 39 H 1.08997 * 109.47726 * 59.99470 * 14 13 4 40 40 H 1.09007 * 109.46957 * 299.99147 * 14 13 4 41 41 H 1.08994 * 109.47284 * 59.99853 * 15 14 13 42 42 H 1.08997 * 109.47284 * 299.99440 * 15 14 13 43 43 H 0.96999 * 120.00320 * 0.02562 * 16 15 14 44 44 H 1.09005 * 109.47063 * 300.00146 * 21 19 17 45 45 H 1.08997 * 109.47202 * 60.00025 * 21 19 17 46 46 H 1.09001 * 109.47189 * 180.02562 * 21 19 17 47 47 H 1.07993 * 120.81660 * 0.02562 * 24 23 22 48 48 H 1.08003 * 120.39285 * 179.97438 * 25 24 23 49 49 H 1.07997 * 119.55944 * 179.97438 * 26 25 24 50 50 H 1.08004 * 119.66024 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7366 -0.1896 2.4391 6 1 0.7660 0.2385 2.6415 7 6 2.6987 -0.2317 3.4388 8 7 3.9705 -0.3564 3.1234 9 14 2.1886 -0.1115 5.2317 10 1 0.7121 0.0221 5.3183 11 1 2.6182 -1.3370 5.9519 12 1 2.8297 1.0766 5.8503 13 6 2.8080 -1.9174 1.0627 14 6 1.8725 -3.1281 1.0579 15 6 2.6972 -4.4092 0.9179 16 7 1.8015 -5.5684 0.9138 17 6 2.3089 -6.8118 0.7994 18 8 3.5072 -6.9709 0.7002 19 6 1.3876 -8.0042 0.7946 20 1 0.7635 -7.9848 1.6881 21 6 0.4984 -7.9568 -0.4496 22 8 2.1624 -9.2049 0.7808 23 6 1.5790 -10.3216 1.2905 24 6 0.2476 -10.3007 1.6941 25 6 -0.3029 -11.4635 2.2078 26 6 0.4822 -12.5976 2.3026 27 7 1.7411 -12.5838 1.9110 28 6 2.3027 -11.4982 1.4167 29 1 -0.3633 0.5963 0.8370 30 1 -0.3633 0.4267 -0.9349 31 1 -0.3634 -1.0230 0.0979 32 1 1.8933 -0.5138 -0.8899 33 1 3.1284 1.4430 -0.0596 34 1 1.6289 1.9732 -0.8587 35 1 1.7262 1.9388 0.9183 36 1 4.6428 -0.3862 3.8220 37 1 3.5005 -1.9966 1.9007 38 1 3.3694 -1.8883 0.1288 39 1 1.1799 -3.0488 0.2199 40 1 1.3111 -3.1572 1.9918 41 1 3.3899 -4.4887 1.7556 42 1 3.2582 -4.3799 -0.0161 43 1 0.8431 -5.4412 0.9928 44 1 -0.0927 -7.0410 -0.4391 45 1 1.1224 -7.9763 -1.3431 46 1 -0.1683 -8.8191 -0.4528 47 1 -0.3422 -9.4000 1.6089 48 1 -1.3332 -11.4837 2.5313 49 1 0.0587 -13.5069 2.7027 50 1 3.3367 -11.5255 1.1061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481354514.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:12 Heat of formation + Delta-G solvation = -25.364136 kcal Electronic energy + Delta-G solvation = -28536.962214 eV Core-core repulsion = 24565.241703 eV Total energy + Delta-G solvation = -3971.720511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17131 -39.83112 -38.23480 -36.80421 -35.09899 -33.01586 -32.56685 -32.36993 -31.33275 -30.32476 -28.78074 -26.21508 -25.81159 -24.91988 -24.06745 -23.46244 -22.60757 -21.00439 -20.24183 -19.54247 -18.81537 -17.74131 -17.09179 -16.42868 -16.33775 -16.11939 -15.60703 -15.30353 -14.95481 -14.75446 -14.37793 -14.25512 -14.02368 -13.87366 -13.68380 -13.33705 -13.28942 -12.87658 -12.69662 -12.55280 -12.46982 -11.97027 -11.79872 -11.62780 -11.51327 -11.47070 -11.33379 -11.01858 -10.80413 -10.69604 -10.44316 -10.25026 -10.19252 -9.98405 -9.94661 -9.80271 -9.63021 -9.52844 -8.99944 -8.77658 -8.50098 -6.56379 -5.80699 -3.40208 0.76798 0.86630 2.31323 2.48451 3.31145 3.37300 3.41490 3.42316 3.44240 4.11436 4.21491 4.37126 4.37462 4.43836 4.45533 4.54784 4.72015 4.84702 5.08772 5.14546 5.18737 5.33103 5.36949 5.58288 5.59024 5.67009 5.67513 5.72209 5.91754 5.95957 6.02434 6.13588 6.25463 6.31880 6.34286 6.42080 6.60422 6.66545 6.70158 6.75968 6.76840 6.83065 7.06039 7.18609 7.32821 7.45328 7.61229 7.62837 7.82349 8.13256 8.52105 9.18084 9.80128 10.39981 11.19111 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015512 B = 0.002150 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.562868 B =13019.350342 C =13726.343924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 C -0.146 4.146 4 N -0.579 5.579 5 C -0.254 4.254 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.290 1.290 13 C 0.153 3.847 14 C -0.145 4.145 15 C 0.121 3.879 16 N -0.719 5.719 17 C 0.513 3.487 18 O -0.517 6.517 19 C 0.064 3.936 20 H 0.098 0.902 21 C -0.175 4.175 22 O -0.276 6.276 23 C 0.085 3.915 24 C -0.171 4.171 25 C -0.130 4.130 26 C 0.054 3.946 27 N -0.447 5.447 28 C 0.077 3.923 29 H 0.051 0.949 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.028 0.972 35 H 0.058 0.942 36 H 0.254 0.746 37 H 0.094 0.906 38 H 0.025 0.975 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.399 0.601 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.073 0.927 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.158 0.842 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.832 -17.726 -5.629 21.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.055 3.945 3 C -0.205 4.205 4 N -0.299 5.299 5 C -0.384 4.384 6 H 0.077 0.923 7 C -0.187 4.187 8 N -0.527 5.527 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.217 1.217 13 C 0.025 3.975 14 C -0.186 4.186 15 C -0.001 4.001 16 N -0.372 5.372 17 C 0.296 3.704 18 O -0.392 6.392 19 C 0.004 3.996 20 H 0.115 0.885 21 C -0.233 4.233 22 O -0.187 6.187 23 C 0.036 3.964 24 C -0.197 4.197 25 C -0.150 4.150 26 C -0.103 4.103 27 N -0.156 5.156 28 C -0.082 4.082 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.111 0.889 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.233 0.767 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.092 0.908 47 H 0.159 0.841 48 H 0.156 0.844 49 H 0.175 0.825 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.082 -18.524 -5.621 21.383 hybrid contribution -1.516 1.014 1.100 2.129 sum -10.598 -17.510 -4.521 20.961 Atomic orbital electron populations 1.22186 0.98849 1.00571 0.99595 1.20415 0.91958 0.92302 0.89825 1.22048 1.00643 0.97913 0.99899 1.43842 1.62196 1.22753 1.01095 1.18911 0.95648 1.36872 0.86927 0.92326 1.25215 0.94726 1.00061 0.98691 1.70009 0.99185 1.51732 1.31749 0.86424 0.78266 0.77376 0.85880 1.20163 1.21504 1.21686 1.20769 0.92719 0.83060 1.00918 1.22518 1.00134 0.94409 1.01525 1.21550 0.92866 0.83565 1.02166 1.46063 1.11235 1.05581 1.74286 1.19938 0.88887 0.83869 0.77678 1.90760 1.15239 1.85499 1.47711 1.22308 0.92613 0.83713 1.00987 0.88472 1.22334 0.99657 1.03858 0.97452 1.86259 1.41451 1.14825 1.76175 1.20282 0.92427 0.88712 0.94957 1.21802 0.94586 1.00430 1.02892 1.22015 1.01448 0.92975 0.98538 1.22696 0.89872 0.98502 0.99226 1.67758 1.12397 1.27125 1.08305 1.22289 1.00735 0.85969 0.99215 0.92986 0.94658 0.93759 0.93746 0.93453 0.95252 0.92271 0.93620 0.88873 0.95638 0.93145 0.91600 0.91270 0.91708 0.76695 0.89868 0.90358 0.90817 0.84064 0.84390 0.82478 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.11 37.16 0.34 -2.32 16 2 C 0.16 3.20 3.36 -67.93 -0.23 2.98 16 3 C -0.15 -2.89 9.18 37.16 0.34 -2.54 16 4 N -0.58 -13.18 2.35 -165.67 -0.39 -13.57 16 5 C -0.25 -6.42 8.04 -15.06 -0.12 -6.54 16 6 H 0.06 1.51 7.12 -52.49 -0.37 1.14 16 7 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 8 N -0.88 -24.46 11.54 55.49 0.64 -23.82 16 9 Si 0.89 20.78 29.60 -169.99 -5.03 15.75 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.15 3.26 5.27 -4.04 -0.02 3.24 16 14 C -0.15 -2.46 5.65 -26.73 -0.15 -2.61 16 15 C 0.12 1.89 5.67 -4.04 -0.02 1.86 16 16 N -0.72 -8.96 5.52 -60.30 -0.33 -9.29 16 17 C 0.51 7.06 7.18 -10.99 -0.08 6.98 16 18 O -0.52 -9.59 16.51 -14.30 -0.24 -9.83 16 19 C 0.06 0.64 2.64 -27.89 -0.07 0.57 16 20 H 0.10 0.75 6.33 -51.92 -0.33 0.42 16 21 C -0.18 -1.28 9.15 37.16 0.34 -0.94 16 22 O -0.28 -3.38 9.35 -39.33 -0.37 -3.74 16 23 C 0.08 0.89 6.62 -39.07 -0.26 0.63 16 24 C -0.17 -1.38 8.35 -39.14 -0.33 -1.71 16 25 C -0.13 -0.91 10.11 -39.46 -0.40 -1.31 16 26 C 0.05 0.44 11.18 -17.53 -0.20 0.24 16 27 N -0.45 -4.78 10.36 -13.12 -0.14 -4.91 16 28 C 0.08 0.83 11.14 -17.37 -0.19 0.63 16 29 H 0.05 0.96 7.34 -51.93 -0.38 0.58 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.83 7.78 -51.93 -0.40 0.43 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 1.27 7.48 -51.93 -0.39 0.88 16 36 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 37 H 0.09 2.31 5.60 -51.93 -0.29 2.02 16 38 H 0.03 0.53 7.90 -51.92 -0.41 0.12 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.40 3.74 8.25 -40.82 -0.34 3.40 16 44 H 0.08 0.46 7.92 -51.93 -0.41 0.04 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.44 6.97 -51.93 -0.36 0.08 16 47 H 0.14 0.83 5.60 -52.49 -0.29 0.54 16 48 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 49 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 50 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 408.21 15.07 6.15 6.15 Total: -1.00 -31.89 408.21 -9.03 -40.92 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.19 Total: 2.91 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.14 Total: -0.57 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.22 Total: -51.60 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.60 Total: -13.57 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.89 -9.03 -40.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481354514.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.560 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds