Wall clock time and date at job start Tue Mar 31 2020 19:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47452 * 2 1 4 4 C 1.52998 * 109.46793 * 120.00274 * 2 1 3 5 5 C 1.53003 * 109.46736 * 174.99684 * 4 2 1 6 6 H 1.09003 * 109.47144 * 54.99992 * 5 4 2 7 7 C 1.52998 * 109.46969 * 175.00080 * 5 4 2 8 8 N 1.46499 * 109.46982 * 174.99928 * 7 5 4 9 9 C 1.36939 * 119.99909 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00096 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00198 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00301 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99788 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46988 * 90.00629 * 13 11 9 15 15 H 1.48504 * 109.47359 * 210.00299 * 13 11 9 16 16 H 1.48495 * 109.47395 * 330.00186 * 13 11 9 17 17 N 1.46501 * 109.46959 * 294.99864 * 5 4 2 18 18 C 1.34774 * 120.00065 * 85.00531 * 17 5 4 19 19 O 1.21280 * 120.00021 * 359.97438 * 18 17 5 20 20 C 1.50705 * 119.99942 * 179.97438 * 18 17 5 21 21 H 1.08996 * 109.47075 * 59.99928 * 20 18 17 22 22 C 1.53004 * 109.46793 * 299.99407 * 20 18 17 23 23 O 1.42900 * 109.46822 * 179.97438 * 20 18 17 24 24 C 1.35909 * 116.99863 * 204.89536 * 23 20 18 25 25 C 1.39143 * 120.47379 * 354.51181 * 24 23 20 26 26 C 1.38535 * 118.37563 * 180.02562 * 25 24 23 27 27 C 1.38258 * 119.22043 * 359.97438 * 26 25 24 28 28 N 1.31844 * 120.88773 * 359.97438 * 27 26 25 29 29 C 1.31847 * 121.77777 * 359.71195 * 28 27 26 30 30 H 1.09004 * 109.46888 * 300.00537 * 1 2 3 31 31 H 1.09004 * 109.46821 * 59.99424 * 1 2 3 32 32 H 1.08999 * 109.47462 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46557 * 239.99895 * 2 1 3 34 34 H 1.08995 * 109.47043 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46852 * 299.99965 * 3 2 1 36 36 H 1.08995 * 109.46986 * 59.99626 * 3 2 1 37 37 H 1.08997 * 109.47308 * 55.00148 * 4 2 1 38 38 H 1.08991 * 109.47297 * 294.99397 * 4 2 1 39 39 H 1.09003 * 109.47019 * 294.99391 * 7 5 4 40 40 H 1.08996 * 109.47539 * 54.99811 * 7 5 4 41 41 H 0.96992 * 120.00496 * 0.02562 * 8 7 5 42 42 H 0.97001 * 120.00434 * 179.97438 * 12 11 9 43 43 H 0.97000 * 119.99673 * 264.99858 * 17 5 4 44 44 H 1.08996 * 109.47262 * 299.99877 * 22 20 18 45 45 H 1.08994 * 109.46695 * 60.00504 * 22 20 18 46 46 H 1.09001 * 109.46730 * 180.02562 * 22 20 18 47 47 H 1.08001 * 120.81410 * 359.97288 * 25 24 23 48 48 H 1.07997 * 120.38844 * 180.02562 * 26 25 24 49 49 H 1.07999 * 119.55713 * 179.97438 * 27 26 25 50 50 H 1.08004 * 119.65769 * 180.28811 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8312 1.1879 6 1 3.9954 0.1610 1.0526 7 6 4.0851 -1.4396 2.4917 8 7 5.5304 -1.6553 2.3873 9 6 6.2200 -2.1941 3.4405 10 1 5.6985 -2.4605 4.3479 11 6 7.5895 -2.3981 3.3418 12 7 8.2524 -2.9164 4.3539 13 14 8.4916 -1.9381 1.7720 14 1 8.9586 -0.5314 1.8635 15 1 9.6599 -2.8368 1.5909 16 1 7.5735 -2.0806 0.6136 17 7 3.9478 -1.6873 0.0625 18 6 4.0651 -1.1632 -1.1736 19 8 3.8531 0.0172 -1.3544 20 6 4.4597 -2.0438 -2.3312 21 1 3.7231 -2.8383 -2.4509 22 6 5.8338 -2.6589 -2.0587 23 8 4.5155 -1.2626 -3.5265 24 6 4.3382 -1.9206 -4.7024 25 6 4.2274 -3.3074 -4.7253 26 6 4.0481 -3.9335 -5.9481 27 6 3.9850 -3.1661 -7.0964 28 7 4.0926 -1.8533 -7.0399 29 6 4.2579 -1.2187 -5.8961 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 1.6054 -1.7198 1.2951 38 1 1.7517 -0.1584 2.1369 39 1 3.8781 -0.7595 3.3180 40 1 3.5876 -2.3925 2.6720 41 1 5.9989 -1.4159 1.5725 42 1 9.2093 -3.0593 4.2848 43 1 4.1171 -2.6315 0.2070 44 1 6.5703 -1.8644 -1.9391 45 1 5.7908 -3.2548 -1.1471 46 1 6.1194 -3.2955 -2.8962 47 1 4.2807 -3.8818 -3.8123 48 1 3.9578 -5.0082 -6.0035 49 1 3.8457 -3.6485 -8.0526 50 1 4.3374 -0.1416 -5.8890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482394172.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:16 Heat of formation + Delta-G solvation = -29.379530 kcal Electronic energy + Delta-G solvation = -30127.819496 eV Core-core repulsion = 26155.924865 eV Total energy + Delta-G solvation = -3971.894632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14288 -40.13114 -38.47488 -36.72575 -35.20327 -33.81029 -32.62265 -32.38871 -31.28434 -30.31626 -29.31510 -27.00097 -25.87958 -25.16223 -24.05697 -23.30260 -22.45114 -21.07928 -20.32218 -19.81272 -18.73515 -18.06786 -17.35038 -17.04011 -16.46659 -16.11985 -15.84219 -15.50514 -14.76159 -14.67075 -14.51708 -14.31117 -14.07977 -13.79282 -13.67411 -13.44806 -13.22083 -13.18859 -12.86358 -12.54212 -12.44675 -12.29826 -12.20129 -12.11750 -11.83890 -11.74597 -11.51565 -11.31065 -11.19228 -10.94689 -10.63066 -10.41462 -10.29471 -10.15440 -10.12647 -9.89047 -9.69478 -9.61935 -9.03334 -8.88212 -8.70400 -7.35980 -5.86528 -3.23354 0.82582 0.93008 2.36801 2.57963 3.25573 3.32829 3.38214 3.44248 3.50088 4.18687 4.29086 4.44236 4.46039 4.49300 4.56754 4.63833 4.75994 4.78650 4.92168 5.03781 5.05251 5.28981 5.34965 5.37978 5.41978 5.44211 5.45002 5.53993 5.70404 5.73405 5.74291 5.78285 5.87669 5.90028 5.90646 5.97636 6.02114 6.09012 6.15564 6.26823 6.34277 6.47431 6.54121 6.68316 6.71587 6.90666 7.54479 7.66468 7.88408 8.22814 8.31922 9.10307 9.82220 10.01339 11.31528 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009288 B = 0.003921 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.024524 B = 7140.078838 C = 9428.988225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.139 4.139 4 C -0.122 4.122 5 C 0.133 3.867 6 H 0.093 0.907 7 C 0.149 3.851 8 N -0.755 5.755 9 C -0.248 4.248 10 H 0.091 0.909 11 C 0.007 3.993 12 N -0.931 5.931 13 Si 0.883 3.117 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.277 1.277 17 N -0.708 5.708 18 C 0.516 3.484 19 O -0.508 6.508 20 C 0.065 3.935 21 H 0.096 0.904 22 C -0.180 4.180 23 O -0.275 6.275 24 C 0.087 3.913 25 C -0.171 4.171 26 C -0.130 4.130 27 C 0.052 3.948 28 N -0.447 5.447 29 C 0.075 3.925 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.404 0.596 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.072 0.928 47 H 0.142 0.858 48 H 0.138 0.862 49 H 0.157 0.843 50 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.222 -1.406 -17.855 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.196 4.196 4 C -0.161 4.161 5 C 0.029 3.971 6 H 0.111 0.889 7 C 0.021 3.979 8 N -0.401 5.401 9 C -0.377 4.377 10 H 0.109 0.891 11 C -0.189 4.189 12 N -0.579 5.579 13 Si 0.713 3.287 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.203 1.203 17 N -0.361 5.361 18 C 0.300 3.700 19 O -0.383 6.383 20 C 0.005 3.995 21 H 0.114 0.886 22 C -0.238 4.238 23 O -0.186 6.186 24 C 0.038 3.962 25 C -0.197 4.197 26 C -0.150 4.150 27 C -0.104 4.104 28 N -0.156 5.156 29 C -0.083 4.083 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.239 0.761 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.091 0.909 47 H 0.160 0.840 48 H 0.156 0.844 49 H 0.175 0.825 50 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -13.326 0.055 -18.458 22.766 hybrid contribution 0.952 -1.065 -0.044 1.429 sum -12.375 -1.010 -18.503 22.282 Atomic orbital electron populations 1.21865 0.96212 1.00976 1.01303 1.21144 0.94380 0.97297 0.98339 1.21832 1.02892 0.94950 0.99898 1.22023 0.94625 1.00846 0.98638 1.21505 0.94478 0.95521 0.85557 0.88880 1.20954 0.85689 0.98078 0.93164 1.42685 1.03047 1.77570 1.16774 1.19034 0.90766 1.33644 0.94281 0.89126 1.24666 0.96251 1.00841 0.97115 1.69693 1.08032 1.49731 1.30431 0.86602 0.79716 0.78311 0.84077 1.21065 1.21729 1.20320 1.45921 1.69821 1.13548 1.06817 1.19854 0.77890 0.88637 0.83666 1.90743 1.48205 1.15442 1.83939 1.22309 0.99773 0.93486 0.83904 0.88605 1.22406 0.95390 1.02319 1.03682 1.86247 1.85773 1.35483 1.11104 1.20272 0.96528 0.91652 0.87717 1.21828 1.04297 0.93578 1.00024 1.22011 0.98848 1.01568 0.92531 1.22673 0.99561 0.89498 0.98691 1.67747 1.09920 1.10907 1.27048 1.22263 1.00236 1.00916 0.84931 0.92958 0.93197 0.93319 0.90999 0.90712 0.93718 0.94091 0.91737 0.90742 0.93854 0.94904 0.80452 0.92963 0.76114 0.90327 0.89462 0.90883 0.84037 0.84430 0.82538 0.81803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.19 37.16 0.34 -1.21 16 2 C -0.09 -1.15 2.38 -90.62 -0.22 -1.37 16 3 C -0.14 -1.85 8.04 37.16 0.30 -1.55 16 4 C -0.12 -1.47 4.36 -26.73 -0.12 -1.59 16 5 C 0.13 1.90 2.33 -67.93 -0.16 1.75 16 6 H 0.09 1.51 5.92 -51.93 -0.31 1.20 16 7 C 0.15 2.55 5.82 -4.04 -0.02 2.52 16 8 N -0.75 -16.45 5.24 -59.91 -0.31 -16.76 16 9 C -0.25 -6.62 10.47 -15.06 -0.16 -6.78 16 10 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 11 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 12 N -0.93 -28.38 13.97 55.49 0.78 -27.60 16 13 Si 0.88 21.31 27.73 -169.99 -4.71 16.59 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 16 H -0.28 -6.04 6.52 56.52 0.37 -5.68 16 17 N -0.71 -9.32 4.36 -53.80 -0.23 -9.55 16 18 C 0.52 7.14 5.79 -10.98 -0.06 7.08 16 19 O -0.51 -8.42 11.46 -14.35 -0.16 -8.58 16 20 C 0.07 0.75 2.65 -27.88 -0.07 0.67 16 21 H 0.10 0.84 6.36 -51.93 -0.33 0.51 16 22 C -0.18 -2.02 9.08 37.16 0.34 -1.68 16 23 O -0.28 -3.58 9.35 -39.36 -0.37 -3.95 16 24 C 0.09 0.98 6.62 -39.07 -0.26 0.72 16 25 C -0.17 -1.56 8.34 -39.14 -0.33 -1.89 16 26 C -0.13 -1.02 10.11 -39.46 -0.40 -1.42 16 27 C 0.05 0.46 11.18 -17.54 -0.20 0.27 16 28 N -0.45 -5.05 10.36 -13.12 -0.14 -5.19 16 29 C 0.08 0.86 11.14 -17.37 -0.19 0.67 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.00 5.19 -51.93 -0.27 0.73 16 34 H 0.07 1.15 4.76 -51.93 -0.25 0.90 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.36 7.85 5.20 -40.82 -0.21 7.64 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.40 4.82 8.02 -40.82 -0.33 4.49 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 0.94 7.56 -51.93 -0.39 0.55 16 46 H 0.07 0.69 6.92 -51.93 -0.36 0.33 16 47 H 0.14 1.04 5.59 -52.49 -0.29 0.74 16 48 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 49 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 50 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 LS Contribution 393.67 15.07 5.93 5.93 Total: -1.00 -32.62 393.67 -8.35 -40.97 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -7.83 Total: 11.84 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.30 Total: -3.70 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 0.09 Total: -59.11 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.53 Total: -12.53 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.71 Total: 16.59 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.62 -8.35 -40.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482394172.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.593 kcal (2) G-P(sol) polarization free energy of solvation -32.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds