Wall clock time and date at job start Tue Mar 31 2020 19:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47452 * 2 1 4 4 C 1.52998 * 109.46793 * 120.00274 * 2 1 3 5 5 C 1.53003 * 109.46736 * 174.99684 * 4 2 1 6 6 H 1.09003 * 109.47144 * 54.99992 * 5 4 2 7 7 C 1.52998 * 109.46969 * 175.00080 * 5 4 2 8 8 N 1.46499 * 109.46982 * 174.99928 * 7 5 4 9 9 C 1.36939 * 119.99909 * 179.97438 * 8 7 5 10 10 H 1.08002 * 120.00096 * 0.02562 * 9 8 7 11 11 C 1.38811 * 120.00198 * 180.02562 * 9 8 7 12 12 N 1.31617 * 120.00301 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99788 * 359.97438 * 11 9 8 14 14 H 1.48507 * 109.46988 * 90.00629 * 13 11 9 15 15 H 1.48504 * 109.47359 * 210.00299 * 13 11 9 16 16 H 1.48495 * 109.47395 * 330.00186 * 13 11 9 17 17 N 1.46501 * 109.46959 * 294.99864 * 5 4 2 18 18 C 1.34774 * 120.00065 * 85.00531 * 17 5 4 19 19 O 1.21280 * 120.00021 * 359.97438 * 18 17 5 20 20 C 1.50705 * 119.99942 * 179.97438 * 18 17 5 21 21 H 1.08996 * 109.47075 * 59.99928 * 20 18 17 22 22 C 1.53004 * 109.46793 * 299.99407 * 20 18 17 23 23 O 1.42900 * 109.46822 * 179.97438 * 20 18 17 24 24 C 1.35909 * 116.99863 * 204.89536 * 23 20 18 25 25 C 1.39143 * 120.47379 * 354.51181 * 24 23 20 26 26 C 1.38535 * 118.37563 * 180.02562 * 25 24 23 27 27 C 1.38258 * 119.22043 * 359.97438 * 26 25 24 28 28 N 1.31844 * 120.88773 * 359.97438 * 27 26 25 29 29 C 1.31847 * 121.77777 * 359.71195 * 28 27 26 30 30 H 1.09004 * 109.46888 * 300.00537 * 1 2 3 31 31 H 1.09004 * 109.46821 * 59.99424 * 1 2 3 32 32 H 1.08999 * 109.47462 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46557 * 239.99895 * 2 1 3 34 34 H 1.08995 * 109.47043 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46852 * 299.99965 * 3 2 1 36 36 H 1.08995 * 109.46986 * 59.99626 * 3 2 1 37 37 H 1.08997 * 109.47308 * 55.00148 * 4 2 1 38 38 H 1.08991 * 109.47297 * 294.99397 * 4 2 1 39 39 H 1.09003 * 109.47019 * 294.99391 * 7 5 4 40 40 H 1.08996 * 109.47539 * 54.99811 * 7 5 4 41 41 H 0.96992 * 120.00496 * 0.02562 * 8 7 5 42 42 H 0.97001 * 120.00434 * 179.97438 * 12 11 9 43 43 H 0.97000 * 119.99673 * 264.99858 * 17 5 4 44 44 H 1.08996 * 109.47262 * 299.99877 * 22 20 18 45 45 H 1.08994 * 109.46695 * 60.00504 * 22 20 18 46 46 H 1.09001 * 109.46730 * 180.02562 * 22 20 18 47 47 H 1.08001 * 120.81410 * 359.97288 * 25 24 23 48 48 H 1.07997 * 120.38844 * 180.02562 * 26 25 24 49 49 H 1.07999 * 119.55713 * 179.97438 * 27 26 25 50 50 H 1.08004 * 119.65769 * 180.28811 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8312 1.1879 6 1 3.9954 0.1610 1.0526 7 6 4.0851 -1.4396 2.4917 8 7 5.5304 -1.6553 2.3873 9 6 6.2200 -2.1941 3.4405 10 1 5.6985 -2.4605 4.3479 11 6 7.5895 -2.3981 3.3418 12 7 8.2524 -2.9164 4.3539 13 14 8.4916 -1.9381 1.7720 14 1 8.9586 -0.5314 1.8635 15 1 9.6599 -2.8368 1.5909 16 1 7.5735 -2.0806 0.6136 17 7 3.9478 -1.6873 0.0625 18 6 4.0651 -1.1632 -1.1736 19 8 3.8531 0.0172 -1.3544 20 6 4.4597 -2.0438 -2.3312 21 1 3.7231 -2.8383 -2.4509 22 6 5.8338 -2.6589 -2.0587 23 8 4.5155 -1.2626 -3.5265 24 6 4.3382 -1.9206 -4.7024 25 6 4.2274 -3.3074 -4.7253 26 6 4.0481 -3.9335 -5.9481 27 6 3.9850 -3.1661 -7.0964 28 7 4.0926 -1.8533 -7.0399 29 6 4.2579 -1.2187 -5.8961 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8899 37 1 1.6054 -1.7198 1.2951 38 1 1.7517 -0.1584 2.1369 39 1 3.8781 -0.7595 3.3180 40 1 3.5876 -2.3925 2.6720 41 1 5.9989 -1.4159 1.5725 42 1 9.2093 -3.0593 4.2848 43 1 4.1171 -2.6315 0.2070 44 1 6.5703 -1.8644 -1.9391 45 1 5.7908 -3.2548 -1.1471 46 1 6.1194 -3.2955 -2.8962 47 1 4.2807 -3.8818 -3.8123 48 1 3.9578 -5.0082 -6.0035 49 1 3.8457 -3.6485 -8.0526 50 1 4.3374 -0.1416 -5.8890 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482394172.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:15 Heat of formation + Delta-G solvation = -50.544945 kcal Electronic energy + Delta-G solvation = -30128.737298 eV Core-core repulsion = 26155.924865 eV Total energy + Delta-G solvation = -3972.812433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99447 -41.09891 -39.35239 -37.89978 -36.56797 -35.20767 -33.74938 -33.21233 -32.85940 -31.18790 -30.49571 -27.97642 -27.32841 -26.06684 -24.84121 -24.34304 -23.88457 -22.34083 -21.37771 -20.82374 -19.84481 -19.52087 -18.48376 -17.78698 -17.44927 -17.14444 -16.87951 -16.61265 -16.28501 -15.80636 -15.52810 -15.41034 -14.96510 -14.86813 -14.73691 -14.67711 -14.47027 -14.28831 -14.00167 -13.86167 -13.51848 -13.33064 -13.18710 -13.11597 -13.02692 -12.91683 -12.66435 -12.54108 -12.44983 -12.29241 -12.03772 -11.83458 -11.69795 -11.40492 -11.27491 -11.03715 -10.84889 -10.64716 -10.59299 -10.00383 -9.48167 -9.31258 -8.02947 -5.36208 0.13080 0.21955 1.33119 1.39632 1.42822 1.45375 1.57370 2.46052 2.49397 2.78569 3.29619 3.38813 3.49168 3.57985 3.63973 3.73802 3.76501 3.86967 3.90538 4.07070 4.12144 4.12872 4.28047 4.32865 4.38133 4.51298 4.54662 4.62085 4.75588 4.80144 4.86528 4.88777 4.90770 4.99159 4.99909 5.05098 5.08454 5.09352 5.14959 5.20996 5.37847 5.42408 5.54286 5.55741 5.63428 5.77047 6.12396 6.20375 6.51867 6.95049 7.07305 7.19096 7.82504 8.00823 9.18312 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009288 B = 0.003921 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.024524 B = 7140.078838 C = 9428.988225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.135 4.135 4 C -0.114 4.114 5 C 0.144 3.856 6 H 0.073 0.927 7 C 0.148 3.852 8 N -0.755 5.755 9 C -0.228 4.228 10 H 0.062 0.938 11 C -0.058 4.058 12 N -0.982 5.982 13 Si 0.944 3.056 14 H -0.293 1.293 15 H -0.296 1.296 16 H -0.242 1.242 17 N -0.703 5.703 18 C 0.512 3.488 19 O -0.540 6.540 20 C 0.070 3.930 21 H 0.128 0.872 22 C -0.178 4.178 23 O -0.300 6.300 24 C 0.068 3.932 25 C -0.170 4.170 26 C -0.121 4.121 27 C 0.048 3.952 28 N -0.472 5.472 29 C 0.053 3.947 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.047 0.953 41 H 0.365 0.635 42 H 0.257 0.743 43 H 0.412 0.588 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.163 0.837 48 H 0.174 0.826 49 H 0.185 0.815 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.848 -3.126 -19.715 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.192 4.192 4 C -0.153 4.153 5 C 0.040 3.960 6 H 0.091 0.909 7 C 0.022 3.978 8 N -0.401 5.401 9 C -0.359 4.359 10 H 0.080 0.920 11 C -0.250 4.250 12 N -0.633 5.633 13 Si 0.772 3.228 14 H -0.221 1.221 15 H -0.223 1.223 16 H -0.166 1.166 17 N -0.357 5.357 18 C 0.297 3.703 19 O -0.417 6.417 20 C 0.011 3.989 21 H 0.145 0.855 22 C -0.236 4.236 23 O -0.212 6.212 24 C 0.021 3.979 25 C -0.196 4.196 26 C -0.140 4.140 27 C -0.110 4.110 28 N -0.182 5.182 29 C -0.105 4.105 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.065 0.935 41 H 0.198 0.802 42 H 0.066 0.934 43 H 0.249 0.751 44 H 0.072 0.928 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.181 0.819 48 H 0.192 0.808 49 H 0.202 0.798 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -15.007 -1.660 -20.347 25.337 hybrid contribution 1.362 -0.539 0.538 1.560 sum -13.645 -2.198 -19.810 24.155 Atomic orbital electron populations 1.21814 0.94527 1.01865 1.01689 1.21077 0.95691 0.96230 0.97801 1.21775 1.01342 0.96029 1.00046 1.21966 0.92605 1.01925 0.98830 1.21270 0.95915 0.94344 0.84481 0.90910 1.21107 0.83087 0.98817 0.94816 1.42666 1.04885 1.77053 1.15506 1.19021 0.90815 1.31680 0.94341 0.91955 1.25388 0.97324 1.01929 1.00354 1.69861 1.08114 1.52318 1.32975 0.85593 0.78715 0.76962 0.81545 1.22064 1.22266 1.16608 1.45848 1.69625 1.13763 1.06441 1.20323 0.77128 0.88566 0.84267 1.90740 1.49544 1.16976 1.84440 1.22316 1.00693 0.93303 0.82619 0.85483 1.22407 0.94496 1.01793 1.04879 1.86209 1.86360 1.36715 1.11902 1.20361 0.97889 0.92760 0.86938 1.22130 1.03301 0.92612 1.01537 1.22414 0.96862 1.03275 0.91447 1.23264 0.98315 0.88851 1.00525 1.67747 1.10911 1.12435 1.27068 1.22268 1.01559 1.01073 0.85556 0.92145 0.93291 0.92167 0.92371 0.93036 0.94345 0.93089 0.90069 0.89934 0.94053 0.93454 0.80191 0.93420 0.75137 0.92771 0.88819 0.88855 0.81919 0.80818 0.79829 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16 2 C -0.09 -2.07 2.38 -10.79 -0.03 -2.10 16 3 C -0.13 -3.54 8.04 71.98 0.58 -2.96 16 4 C -0.11 -2.50 4.36 30.59 0.13 -2.36 16 5 C 0.14 3.91 2.33 44.99 0.10 4.01 16 6 H 0.07 2.33 5.92 -2.39 -0.01 2.31 16 7 C 0.15 4.84 5.82 86.38 0.50 5.34 16 8 N -0.76 -31.99 5.24 -343.45 -1.80 -33.79 16 9 C -0.23 -12.16 10.47 84.03 0.88 -11.28 16 10 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 11 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16 12 N -0.98 -61.08 13.97 21.65 0.30 -60.78 16 13 Si 0.94 43.89 27.73 68.60 1.90 45.79 16 14 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 15 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 16 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16 17 N -0.70 -17.15 4.36 -442.52 -1.93 -19.08 16 18 C 0.51 13.53 5.79 87.66 0.51 14.04 16 19 O -0.54 -17.86 11.46 16.01 0.18 -17.68 16 20 C 0.07 1.47 2.65 29.85 0.08 1.54 16 21 H 0.13 1.80 6.36 -2.39 -0.02 1.78 16 22 C -0.18 -3.54 9.08 71.98 0.65 -2.89 16 23 O -0.30 -7.60 9.35 -73.49 -0.69 -8.29 16 24 C 0.07 1.47 6.62 22.60 0.15 1.62 16 25 C -0.17 -2.58 8.34 22.56 0.19 -2.39 16 26 C -0.12 -1.45 10.11 22.35 0.23 -1.22 16 27 C 0.05 0.72 11.18 84.70 0.95 1.67 16 28 N -0.47 -10.26 10.36 -195.44 -2.02 -12.28 16 29 C 0.05 1.21 11.14 84.80 0.94 2.16 16 30 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.53 5.19 -2.38 -0.01 1.52 16 34 H 0.05 1.60 4.76 -2.39 -0.01 1.59 16 35 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.36 15.16 5.20 -92.71 -0.48 14.68 16 42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 43 H 0.41 8.69 8.02 -92.71 -0.74 7.95 16 44 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.09 1.72 7.56 -2.39 -0.02 1.70 16 46 H 0.09 1.46 6.92 -2.39 -0.02 1.44 16 47 H 0.16 1.68 5.59 -2.91 -0.02 1.66 16 48 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 49 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 50 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -72.93 393.67 2.62 -70.31 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -0.33 Total: 35.46 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 7.00 Total: 0.34 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -5.45 Total: -125.94 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.50 Total: -25.97 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.90 Total: 45.79 kcal Total: -72.93 2.62 -70.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482394172.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.768 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds