Wall clock time and date at job start Tue Mar 31 2020 19:06:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47452 * 2 1
4 4 C 1.52998 * 109.46793 * 120.00274 * 2 1 3
5 5 C 1.53003 * 109.46736 * 174.99684 * 4 2 1
6 6 H 1.09003 * 109.47144 * 54.99992 * 5 4 2
7 7 C 1.52998 * 109.46969 * 175.00080 * 5 4 2
8 8 N 1.46499 * 109.46982 * 174.99928 * 7 5 4
9 9 C 1.36939 * 119.99909 * 179.97438 * 8 7 5
10 10 H 1.08002 * 120.00096 * 0.02562 * 9 8 7
11 11 C 1.38811 * 120.00198 * 180.02562 * 9 8 7
12 12 N 1.31617 * 120.00301 * 180.02562 * 11 9 8
13 13 Si 1.86802 * 119.99788 * 359.97438 * 11 9 8
14 14 H 1.48507 * 109.46988 * 90.00629 * 13 11 9
15 15 H 1.48504 * 109.47359 * 210.00299 * 13 11 9
16 16 H 1.48495 * 109.47395 * 330.00186 * 13 11 9
17 17 N 1.46501 * 109.46959 * 294.99864 * 5 4 2
18 18 C 1.34774 * 120.00065 * 85.00531 * 17 5 4
19 19 O 1.21280 * 120.00021 * 359.97438 * 18 17 5
20 20 C 1.50705 * 119.99942 * 179.97438 * 18 17 5
21 21 H 1.08996 * 109.47075 * 59.99928 * 20 18 17
22 22 C 1.53004 * 109.46793 * 299.99407 * 20 18 17
23 23 O 1.42900 * 109.46822 * 179.97438 * 20 18 17
24 24 C 1.35909 * 116.99863 * 204.89536 * 23 20 18
25 25 C 1.39143 * 120.47379 * 354.51181 * 24 23 20
26 26 C 1.38535 * 118.37563 * 180.02562 * 25 24 23
27 27 C 1.38258 * 119.22043 * 359.97438 * 26 25 24
28 28 N 1.31844 * 120.88773 * 359.97438 * 27 26 25
29 29 C 1.31847 * 121.77777 * 359.71195 * 28 27 26
30 30 H 1.09004 * 109.46888 * 300.00537 * 1 2 3
31 31 H 1.09004 * 109.46821 * 59.99424 * 1 2 3
32 32 H 1.08999 * 109.47462 * 179.97438 * 1 2 3
33 33 H 1.09004 * 109.46557 * 239.99895 * 2 1 3
34 34 H 1.08995 * 109.47043 * 180.02562 * 3 2 1
35 35 H 1.09006 * 109.46852 * 299.99965 * 3 2 1
36 36 H 1.08995 * 109.46986 * 59.99626 * 3 2 1
37 37 H 1.08997 * 109.47308 * 55.00148 * 4 2 1
38 38 H 1.08991 * 109.47297 * 294.99397 * 4 2 1
39 39 H 1.09003 * 109.47019 * 294.99391 * 7 5 4
40 40 H 1.08996 * 109.47539 * 54.99811 * 7 5 4
41 41 H 0.96992 * 120.00496 * 0.02562 * 8 7 5
42 42 H 0.97001 * 120.00434 * 179.97438 * 12 11 9
43 43 H 0.97000 * 119.99673 * 264.99858 * 17 5 4
44 44 H 1.08996 * 109.47262 * 299.99877 * 22 20 18
45 45 H 1.08994 * 109.46695 * 60.00504 * 22 20 18
46 46 H 1.09001 * 109.46730 * 180.02562 * 22 20 18
47 47 H 1.08001 * 120.81410 * 359.97288 * 25 24 23
48 48 H 1.07997 * 120.38844 * 180.02562 * 26 25 24
49 49 H 1.07999 * 119.55713 * 179.97438 * 27 26 25
50 50 H 1.08004 * 119.65769 * 180.28811 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5648 -0.8312 1.1879
6 1 3.9954 0.1610 1.0526
7 6 4.0851 -1.4396 2.4917
8 7 5.5304 -1.6553 2.3873
9 6 6.2200 -2.1941 3.4405
10 1 5.6985 -2.4605 4.3479
11 6 7.5895 -2.3981 3.3418
12 7 8.2524 -2.9164 4.3539
13 14 8.4916 -1.9381 1.7720
14 1 8.9586 -0.5314 1.8635
15 1 9.6599 -2.8368 1.5909
16 1 7.5735 -2.0806 0.6136
17 7 3.9478 -1.6873 0.0625
18 6 4.0651 -1.1632 -1.1736
19 8 3.8531 0.0172 -1.3544
20 6 4.4597 -2.0438 -2.3312
21 1 3.7231 -2.8383 -2.4509
22 6 5.8338 -2.6589 -2.0587
23 8 4.5155 -1.2626 -3.5265
24 6 4.3382 -1.9206 -4.7024
25 6 4.2274 -3.3074 -4.7253
26 6 4.0481 -3.9335 -5.9481
27 6 3.9850 -3.1661 -7.0964
28 7 4.0926 -1.8533 -7.0399
29 6 4.2579 -1.2187 -5.8961
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3634 -1.0276 -0.0005
33 1 1.8933 -0.5139 -0.8900
34 1 3.1301 1.4424 -0.0005
35 1 1.6768 1.9563 -0.8900
36 1 1.6768 1.9563 0.8899
37 1 1.6054 -1.7198 1.2951
38 1 1.7517 -0.1584 2.1369
39 1 3.8781 -0.7595 3.3180
40 1 3.5876 -2.3925 2.6720
41 1 5.9989 -1.4159 1.5725
42 1 9.2093 -3.0593 4.2848
43 1 4.1171 -2.6315 0.2070
44 1 6.5703 -1.8644 -1.9391
45 1 5.7908 -3.2548 -1.1471
46 1 6.1194 -3.2955 -2.8962
47 1 4.2807 -3.8818 -3.8123
48 1 3.9578 -5.0082 -6.0035
49 1 3.8457 -3.6485 -8.0526
50 1 4.3374 -0.1416 -5.8890
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001482394172.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:06:15
Heat of formation + Delta-G solvation = -50.544945 kcal
Electronic energy + Delta-G solvation = -30128.737298 eV
Core-core repulsion = 26155.924865 eV
Total energy + Delta-G solvation = -3972.812433 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.99447 -41.09891 -39.35239 -37.89978 -36.56797 -35.20767 -33.74938 -33.21233
-32.85940 -31.18790 -30.49571 -27.97642 -27.32841 -26.06684 -24.84121 -24.34304
-23.88457 -22.34083 -21.37771 -20.82374 -19.84481 -19.52087 -18.48376 -17.78698
-17.44927 -17.14444 -16.87951 -16.61265 -16.28501 -15.80636 -15.52810 -15.41034
-14.96510 -14.86813 -14.73691 -14.67711 -14.47027 -14.28831 -14.00167 -13.86167
-13.51848 -13.33064 -13.18710 -13.11597 -13.02692 -12.91683 -12.66435 -12.54108
-12.44983 -12.29241 -12.03772 -11.83458 -11.69795 -11.40492 -11.27491 -11.03715
-10.84889 -10.64716 -10.59299 -10.00383 -9.48167 -9.31258 -8.02947 -5.36208
0.13080 0.21955 1.33119 1.39632 1.42822 1.45375 1.57370 2.46052
2.49397 2.78569 3.29619 3.38813 3.49168 3.57985 3.63973 3.73802
3.76501 3.86967 3.90538 4.07070 4.12144 4.12872 4.28047 4.32865
4.38133 4.51298 4.54662 4.62085 4.75588 4.80144 4.86528 4.88777
4.90770 4.99159 4.99909 5.05098 5.08454 5.09352 5.14959 5.20996
5.37847 5.42408 5.54286 5.55741 5.63428 5.77047 6.12396 6.20375
6.51867 6.95049 7.07305 7.19096 7.82504 8.00823 9.18312
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.009288 B = 0.003921 C = 0.002969
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3014.024524 B = 7140.078838 C = 9428.988225
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.089 4.089
3 C -0.135 4.135
4 C -0.114 4.114
5 C 0.144 3.856
6 H 0.073 0.927
7 C 0.148 3.852
8 N -0.755 5.755
9 C -0.228 4.228
10 H 0.062 0.938
11 C -0.058 4.058
12 N -0.982 5.982
13 Si 0.944 3.056
14 H -0.293 1.293
15 H -0.296 1.296
16 H -0.242 1.242
17 N -0.703 5.703
18 C 0.512 3.488
19 O -0.540 6.540
20 C 0.070 3.930
21 H 0.128 0.872
22 C -0.178 4.178
23 O -0.300 6.300
24 C 0.068 3.932
25 C -0.170 4.170
26 C -0.121 4.121
27 C 0.048 3.952
28 N -0.472 5.472
29 C 0.053 3.947
30 H 0.059 0.941
31 H 0.048 0.952
32 H 0.059 0.941
33 H 0.058 0.942
34 H 0.051 0.949
35 H 0.037 0.963
36 H 0.050 0.950
37 H 0.081 0.919
38 H 0.082 0.918
39 H 0.042 0.958
40 H 0.047 0.953
41 H 0.365 0.635
42 H 0.257 0.743
43 H 0.412 0.588
44 H 0.053 0.947
45 H 0.093 0.907
46 H 0.093 0.907
47 H 0.163 0.837
48 H 0.174 0.826
49 H 0.185 0.815
50 H 0.158 0.842
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.848 -3.126 -19.715 24.878
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.108 4.108
3 C -0.192 4.192
4 C -0.153 4.153
5 C 0.040 3.960
6 H 0.091 0.909
7 C 0.022 3.978
8 N -0.401 5.401
9 C -0.359 4.359
10 H 0.080 0.920
11 C -0.250 4.250
12 N -0.633 5.633
13 Si 0.772 3.228
14 H -0.221 1.221
15 H -0.223 1.223
16 H -0.166 1.166
17 N -0.357 5.357
18 C 0.297 3.703
19 O -0.417 6.417
20 C 0.011 3.989
21 H 0.145 0.855
22 C -0.236 4.236
23 O -0.212 6.212
24 C 0.021 3.979
25 C -0.196 4.196
26 C -0.140 4.140
27 C -0.110 4.110
28 N -0.182 5.182
29 C -0.105 4.105
30 H 0.079 0.921
31 H 0.067 0.933
32 H 0.078 0.922
33 H 0.076 0.924
34 H 0.070 0.930
35 H 0.057 0.943
36 H 0.069 0.931
37 H 0.099 0.901
38 H 0.101 0.899
39 H 0.059 0.941
40 H 0.065 0.935
41 H 0.198 0.802
42 H 0.066 0.934
43 H 0.249 0.751
44 H 0.072 0.928
45 H 0.112 0.888
46 H 0.111 0.889
47 H 0.181 0.819
48 H 0.192 0.808
49 H 0.202 0.798
50 H 0.175 0.825
Dipole moment (debyes) X Y Z Total
from point charges -15.007 -1.660 -20.347 25.337
hybrid contribution 1.362 -0.539 0.538 1.560
sum -13.645 -2.198 -19.810 24.155
Atomic orbital electron populations
1.21814 0.94527 1.01865 1.01689 1.21077 0.95691 0.96230 0.97801
1.21775 1.01342 0.96029 1.00046 1.21966 0.92605 1.01925 0.98830
1.21270 0.95915 0.94344 0.84481 0.90910 1.21107 0.83087 0.98817
0.94816 1.42666 1.04885 1.77053 1.15506 1.19021 0.90815 1.31680
0.94341 0.91955 1.25388 0.97324 1.01929 1.00354 1.69861 1.08114
1.52318 1.32975 0.85593 0.78715 0.76962 0.81545 1.22064 1.22266
1.16608 1.45848 1.69625 1.13763 1.06441 1.20323 0.77128 0.88566
0.84267 1.90740 1.49544 1.16976 1.84440 1.22316 1.00693 0.93303
0.82619 0.85483 1.22407 0.94496 1.01793 1.04879 1.86209 1.86360
1.36715 1.11902 1.20361 0.97889 0.92760 0.86938 1.22130 1.03301
0.92612 1.01537 1.22414 0.96862 1.03275 0.91447 1.23264 0.98315
0.88851 1.00525 1.67747 1.10911 1.12435 1.27068 1.22268 1.01559
1.01073 0.85556 0.92145 0.93291 0.92167 0.92371 0.93036 0.94345
0.93089 0.90069 0.89934 0.94053 0.93454 0.80191 0.93420 0.75137
0.92771 0.88819 0.88855 0.81919 0.80818 0.79829 0.82452
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16
2 C -0.09 -2.07 2.38 -10.79 -0.03 -2.10 16
3 C -0.13 -3.54 8.04 71.98 0.58 -2.96 16
4 C -0.11 -2.50 4.36 30.59 0.13 -2.36 16
5 C 0.14 3.91 2.33 44.99 0.10 4.01 16
6 H 0.07 2.33 5.92 -2.39 -0.01 2.31 16
7 C 0.15 4.84 5.82 86.38 0.50 5.34 16
8 N -0.76 -31.99 5.24 -343.45 -1.80 -33.79 16
9 C -0.23 -12.16 10.47 84.03 0.88 -11.28 16
10 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16
11 C -0.06 -3.29 5.50 84.86 0.47 -2.83 16
12 N -0.98 -61.08 13.97 21.65 0.30 -60.78 16
13 Si 0.94 43.89 27.73 68.60 1.90 45.79 16
14 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16
15 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16
16 H -0.24 -9.68 6.52 99.48 0.65 -9.03 16
17 N -0.70 -17.15 4.36 -442.52 -1.93 -19.08 16
18 C 0.51 13.53 5.79 87.66 0.51 14.04 16
19 O -0.54 -17.86 11.46 16.01 0.18 -17.68 16
20 C 0.07 1.47 2.65 29.85 0.08 1.54 16
21 H 0.13 1.80 6.36 -2.39 -0.02 1.78 16
22 C -0.18 -3.54 9.08 71.98 0.65 -2.89 16
23 O -0.30 -7.60 9.35 -73.49 -0.69 -8.29 16
24 C 0.07 1.47 6.62 22.60 0.15 1.62 16
25 C -0.17 -2.58 8.34 22.56 0.19 -2.39 16
26 C -0.12 -1.45 10.11 22.35 0.23 -1.22 16
27 C 0.05 0.72 11.18 84.70 0.95 1.67 16
28 N -0.47 -10.26 10.36 -195.44 -2.02 -12.28 16
29 C 0.05 1.21 11.14 84.80 0.94 2.16 16
30 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16
31 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16
32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
33 H 0.06 1.53 5.19 -2.38 -0.01 1.52 16
34 H 0.05 1.60 4.76 -2.39 -0.01 1.59 16
35 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16
36 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16
38 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
39 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16
40 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16
41 H 0.36 15.16 5.20 -92.71 -0.48 14.68 16
42 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16
43 H 0.41 8.69 8.02 -92.71 -0.74 7.95 16
44 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16
45 H 0.09 1.72 7.56 -2.39 -0.02 1.70 16
46 H 0.09 1.46 6.92 -2.39 -0.02 1.44 16
47 H 0.16 1.68 5.59 -2.91 -0.02 1.66 16
48 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16
49 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16
50 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16
Total: -1.00 -72.93 393.67 2.62 -70.31
By element:
Atomic # 1 Polarization: 35.78 SS G_CDS: -0.33 Total: 35.46 kcal
Atomic # 6 Polarization: -6.65 SS G_CDS: 7.00 Total: 0.34 kcal
Atomic # 7 Polarization: -120.49 SS G_CDS: -5.45 Total: -125.94 kcal
Atomic # 8 Polarization: -25.47 SS G_CDS: -0.50 Total: -25.97 kcal
Atomic # 14 Polarization: 43.89 SS G_CDS: 1.90 Total: 45.79 kcal
Total: -72.93 2.62 -70.31 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001482394172.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.768 kcal
(2) G-P(sol) polarization free energy of solvation -72.933 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.165 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.545 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds