Wall clock time and date at job start Tue Mar 31 2020 19:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46670 * 2 1 4 4 C 1.53002 * 109.47290 * 120.00236 * 2 1 3 5 5 C 1.52999 * 109.46919 * 175.00230 * 4 2 1 6 6 H 1.08997 * 109.47640 * 54.99638 * 5 4 2 7 7 C 1.52993 * 109.47055 * 175.00186 * 5 4 2 8 8 N 1.46498 * 109.47377 * 174.99750 * 7 5 4 9 9 C 1.36943 * 120.00282 * 179.97438 * 8 7 5 10 10 H 1.07996 * 119.99860 * 359.97438 * 9 8 7 11 11 C 1.38808 * 119.99970 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99983 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 119.99973 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46797 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47146 * 119.99729 * 13 11 9 16 16 H 1.48497 * 109.47039 * 239.99972 * 13 11 9 17 17 N 1.46502 * 109.47163 * 294.99785 * 5 4 2 18 18 C 1.34783 * 119.99793 * 84.99754 * 17 5 4 19 19 O 1.21283 * 119.99969 * 0.02562 * 18 17 5 20 20 C 1.50695 * 119.99973 * 179.72526 * 18 17 5 21 21 H 1.09004 * 109.47179 * 305.28110 * 20 18 17 22 22 C 1.53005 * 109.47263 * 65.27757 * 20 18 17 23 23 O 1.42901 * 109.47408 * 185.28148 * 20 18 17 24 24 C 1.35912 * 117.00324 * 154.69637 * 23 20 18 25 25 C 1.39135 * 120.46985 * 5.36121 * 24 23 20 26 26 C 1.38543 * 118.37384 * 180.02562 * 25 24 23 27 27 C 1.38258 * 119.21759 * 0.02562 * 26 25 24 28 28 N 1.31841 * 120.88917 * 359.97438 * 27 26 25 29 29 C 1.31851 * 121.77886 * 359.70780 * 28 27 26 30 30 H 1.09001 * 109.46684 * 299.99257 * 1 2 3 31 31 H 1.08992 * 109.47172 * 59.99824 * 1 2 3 32 32 H 1.08999 * 109.46586 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46684 * 240.00743 * 2 1 3 34 34 H 1.09000 * 109.47023 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47467 * 299.99995 * 3 2 1 36 36 H 1.09001 * 109.46960 * 60.00912 * 3 2 1 37 37 H 1.08997 * 109.46996 * 55.00033 * 4 2 1 38 38 H 1.08992 * 109.46887 * 295.00185 * 4 2 1 39 39 H 1.09000 * 109.47264 * 294.99759 * 7 5 4 40 40 H 1.09000 * 109.47390 * 54.99394 * 7 5 4 41 41 H 0.97003 * 119.99845 * 359.97438 * 8 7 5 42 42 H 0.97002 * 119.99532 * 180.02562 * 12 11 9 43 43 H 0.96999 * 120.00395 * 265.00526 * 17 5 4 44 44 H 1.08996 * 109.47306 * 180.02562 * 22 20 18 45 45 H 1.09004 * 109.46896 * 300.00148 * 22 20 18 46 46 H 1.08996 * 109.46464 * 60.00168 * 22 20 18 47 47 H 1.08000 * 120.82020 * 359.97438 * 25 24 23 48 48 H 1.07996 * 120.39272 * 180.02562 * 26 25 24 49 49 H 1.07998 * 119.55262 * 179.97438 * 27 26 25 50 50 H 1.08003 * 119.65862 * 180.28384 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.8310 1.1879 6 1 3.9955 0.1611 1.0526 7 6 4.0853 -1.4394 2.4916 8 7 5.5305 -1.6550 2.3873 9 6 6.2203 -2.1938 3.4405 10 1 5.6989 -2.4594 4.3482 11 6 7.5898 -2.3976 3.3417 12 7 8.2253 -2.0735 2.2356 13 14 8.5306 -3.1333 4.7781 14 1 7.5920 -3.4086 5.8955 15 1 9.1765 -4.4000 4.3500 16 1 9.5711 -2.1754 5.2309 17 7 3.9481 -1.6871 0.0625 18 6 4.0652 -1.1628 -1.1737 19 8 3.8538 0.0177 -1.3542 20 6 4.4653 -2.0422 -2.3302 21 1 5.4008 -2.5494 -2.0944 22 6 3.3713 -3.0816 -2.5831 23 8 4.6401 -1.2403 -3.5001 24 6 5.4752 -1.7211 -4.4586 25 6 6.0325 -2.9901 -4.3370 26 6 6.8784 -3.4365 -5.3393 27 6 7.1395 -2.6129 -6.4186 28 7 6.5949 -1.4152 -6.5034 29 6 5.7800 -0.9556 -5.5744 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6055 -1.7198 1.2951 38 1 1.7517 -0.1584 2.1369 39 1 3.8781 -0.7595 3.3180 40 1 3.5878 -2.3924 2.6719 41 1 5.9989 -1.4161 1.5721 42 1 9.1823 -2.2163 2.1665 43 1 4.1174 -2.6312 0.2069 44 1 3.6609 -3.7178 -3.4193 45 1 3.2381 -3.6932 -1.6907 46 1 2.4359 -2.5743 -2.8190 47 1 5.8118 -3.6117 -3.4819 48 1 7.3285 -4.4163 -5.2783 49 1 7.7984 -2.9552 -7.2028 50 1 5.3494 0.0292 -5.6808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482394173.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:18 Heat of formation + Delta-G solvation = -53.929830 kcal Electronic energy + Delta-G solvation = -29952.477662 eV Core-core repulsion = 25979.518450 eV Total energy + Delta-G solvation = -3972.959212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.95235 -41.05274 -39.31086 -37.81664 -36.45141 -35.13383 -33.64838 -33.18525 -32.57521 -31.09321 -30.32133 -27.95342 -27.18050 -25.98251 -24.88832 -24.57220 -23.93181 -22.26253 -21.30163 -20.78846 -19.50611 -19.29421 -18.43624 -17.77310 -17.39334 -17.06882 -16.91604 -16.58270 -16.34573 -15.55593 -15.45616 -15.28070 -15.07953 -14.93947 -14.74405 -14.51173 -14.45279 -14.20350 -13.94689 -13.64076 -13.39687 -13.20162 -13.11793 -13.02367 -12.95998 -12.83168 -12.62580 -12.50791 -12.36432 -12.23724 -12.05060 -11.89072 -11.63044 -11.38060 -11.23277 -10.98757 -10.83573 -10.61151 -10.58638 -9.93052 -9.46393 -9.00514 -7.94760 -5.23700 0.13502 0.22613 1.47892 1.49496 1.51174 1.58749 1.61724 2.53361 2.57417 2.79435 3.40103 3.46371 3.57241 3.63538 3.71999 3.77496 3.84098 3.93119 4.00506 4.09835 4.13968 4.25137 4.30770 4.38498 4.42674 4.59659 4.62316 4.67304 4.76450 4.82390 4.88798 4.90904 4.93264 5.01008 5.01164 5.07109 5.10735 5.11310 5.17464 5.24419 5.40322 5.43387 5.52156 5.57576 5.61085 5.66736 6.13573 6.26388 6.57791 6.94800 7.25494 7.34250 8.07804 8.31174 9.28382 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007470 B = 0.003993 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3747.611627 B = 7009.719818 C =10057.299826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.134 4.134 4 C -0.113 4.113 5 C 0.148 3.852 6 H 0.063 0.937 7 C 0.145 3.855 8 N -0.743 5.743 9 C -0.240 4.240 10 H 0.079 0.921 11 C -0.071 4.071 12 N -0.968 5.968 13 Si 0.969 3.031 14 H -0.265 1.265 15 H -0.293 1.293 16 H -0.300 1.300 17 N -0.697 5.697 18 C 0.514 3.486 19 O -0.544 6.544 20 C 0.065 3.935 21 H 0.105 0.895 22 C -0.165 4.165 23 O -0.299 6.299 24 C 0.068 3.932 25 C -0.171 4.171 26 C -0.123 4.123 27 C 0.048 3.952 28 N -0.471 5.471 29 C 0.054 3.946 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.047 0.953 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.043 0.957 41 H 0.374 0.626 42 H 0.249 0.751 43 H 0.410 0.590 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.069 0.931 47 H 0.159 0.841 48 H 0.172 0.828 49 H 0.186 0.814 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.506 -5.366 -12.283 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.192 4.192 4 C -0.151 4.151 5 C 0.043 3.957 6 H 0.081 0.919 7 C 0.018 3.982 8 N -0.386 5.386 9 C -0.372 4.372 10 H 0.097 0.903 11 C -0.264 4.264 12 N -0.619 5.619 13 Si 0.799 3.201 14 H -0.189 1.189 15 H -0.220 1.220 16 H -0.228 1.228 17 N -0.350 5.350 18 C 0.299 3.701 19 O -0.422 6.422 20 C 0.005 3.995 21 H 0.122 0.878 22 C -0.222 4.222 23 O -0.211 6.211 24 C 0.020 3.980 25 C -0.198 4.198 26 C -0.142 4.142 27 C -0.109 4.109 28 N -0.180 5.180 29 C -0.104 4.104 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.206 0.794 42 H 0.058 0.942 43 H 0.246 0.754 44 H 0.105 0.895 45 H 0.119 0.881 46 H 0.088 0.912 47 H 0.176 0.824 48 H 0.189 0.811 49 H 0.203 0.797 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.608 -3.872 -12.911 18.457 hybrid contribution 1.156 -0.946 1.329 1.999 sum -11.453 -4.818 -11.583 16.987 Atomic orbital electron populations 1.21805 0.94341 1.01937 1.01689 1.21080 0.95781 0.96073 0.97888 1.21767 1.01159 0.96234 0.99998 1.21959 0.92554 1.01854 0.98775 1.21199 0.95716 0.94017 0.84746 0.91853 1.21122 0.84239 0.98256 0.94550 1.42531 1.03574 1.75858 1.16602 1.19660 0.90766 1.31816 0.94965 0.90304 1.25487 0.97681 1.03456 0.99741 1.69828 1.08344 1.55704 1.28044 0.85138 0.78515 0.77143 0.79333 1.18897 1.21989 1.22757 1.45745 1.69429 1.13545 1.06289 1.20289 0.77217 0.88374 0.84194 1.90723 1.49892 1.17033 1.84531 1.22362 1.02210 0.91562 0.83377 0.87769 1.22295 0.97431 0.97366 1.05100 1.86180 1.60713 1.47510 1.26688 1.20369 0.92384 0.94310 0.90888 1.22120 1.00197 0.95242 1.02204 1.22408 0.96356 1.02446 0.93025 1.23249 0.99214 0.89445 0.98986 1.67743 1.07335 1.15948 1.26987 1.22290 0.97856 1.00713 0.89508 0.92183 0.93209 0.92028 0.92237 0.93444 0.94260 0.93135 0.90017 0.90094 0.94721 0.93881 0.79401 0.94196 0.75398 0.89496 0.88095 0.91183 0.82403 0.81051 0.79679 0.82116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.19 71.98 0.66 -2.13 16 2 C -0.09 -2.25 2.38 -10.79 -0.03 -2.28 16 3 C -0.13 -3.85 8.04 71.98 0.58 -3.27 16 4 C -0.11 -2.69 4.36 30.59 0.13 -2.56 16 5 C 0.15 4.51 2.33 44.99 0.10 4.61 16 6 H 0.06 2.34 5.92 -2.39 -0.01 2.32 16 7 C 0.15 5.12 5.82 86.38 0.50 5.63 16 8 N -0.74 -34.85 5.43 -343.47 -1.87 -36.72 16 9 C -0.24 -12.60 9.99 84.03 0.84 -11.76 16 10 H 0.08 3.95 7.83 -2.91 -0.02 3.92 16 11 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 12 N -0.97 -57.35 13.06 21.65 0.28 -57.07 16 13 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 16 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 17 N -0.70 -19.69 4.43 -442.54 -1.96 -21.66 16 18 C 0.51 15.63 5.73 87.65 0.50 16.13 16 19 O -0.54 -20.16 11.47 15.95 0.18 -19.98 16 20 C 0.06 1.60 2.64 29.85 0.08 1.67 16 21 H 0.10 2.45 6.32 -2.38 -0.02 2.44 16 22 C -0.16 -2.79 9.16 71.98 0.66 -2.13 16 23 O -0.30 -8.67 9.35 -73.57 -0.69 -9.36 16 24 C 0.07 1.77 6.62 22.60 0.15 1.92 16 25 C -0.17 -3.55 8.36 22.56 0.19 -3.36 16 26 C -0.12 -2.10 10.11 22.35 0.23 -1.88 16 27 C 0.05 0.93 11.18 84.70 0.95 1.87 16 28 N -0.47 -11.91 10.36 -195.44 -2.02 -13.93 16 29 C 0.05 1.43 11.14 84.80 0.94 2.37 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.70 5.19 -2.39 -0.01 1.68 16 34 H 0.05 1.64 4.76 -2.39 -0.01 1.63 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.37 19.17 7.33 -92.71 -0.68 18.49 16 42 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 43 H 0.41 10.42 8.40 -92.71 -0.78 9.64 16 44 H 0.09 1.22 6.98 -2.39 -0.02 1.21 16 45 H 0.10 1.32 7.94 -2.39 -0.02 1.30 16 46 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.16 2.65 5.61 -2.91 -0.02 2.64 16 48 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 49 H 0.19 2.30 8.06 -2.91 -0.02 2.27 16 50 H 0.16 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -70.23 397.69 2.41 -67.82 By element: Atomic # 1 Polarization: 43.53 SS G_CDS: -0.50 Total: 43.03 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 6.96 Total: 1.40 kcal Atomic # 7 Polarization: -123.81 SS G_CDS: -5.57 Total: -129.38 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.50 Total: -29.34 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -70.23 2.41 -67.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482394173.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.891 kcal (2) G-P(sol) polarization free energy of solvation -70.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds