Wall clock time and date at job start Tue Mar 31 2020 18:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46895 * 2 1 4 4 C 1.52993 * 109.46963 * 120.00062 * 2 1 3 5 5 O 1.42904 * 109.47063 * 65.00512 * 4 2 1 6 6 C 1.35422 * 116.99941 * 180.02562 * 5 4 2 7 7 N 1.32234 * 119.80240 * 359.97151 * 6 5 4 8 8 C 1.31884 * 121.80406 * 180.02562 * 7 6 5 9 9 C 1.38359 * 121.18110 * 359.71414 * 8 7 6 10 10 C 1.38338 * 119.45734 * 0.56143 * 9 8 7 11 11 C 1.39983 * 118.35153 * 359.45673 * 10 9 8 12 12 C 1.47525 * 120.59637 * 180.24734 * 11 10 9 13 13 O 1.21588 * 119.99772 * 179.97438 * 12 11 10 14 14 N 1.34768 * 120.00240 * 0.02562 * 12 11 10 15 15 C 1.46499 * 120.00436 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.46787 * 34.99426 * 15 14 12 17 17 C 1.53007 * 109.47017 * 275.00008 * 15 14 12 18 18 C 1.52995 * 109.47460 * 155.00051 * 15 14 12 19 19 N 1.46508 * 109.46848 * 304.99747 * 18 15 14 20 20 C 1.46501 * 120.00029 * 270.00052 * 19 18 15 21 21 C 1.36938 * 119.99779 * 90.00100 * 19 18 15 22 22 H 1.08002 * 119.99446 * 20.29684 * 21 19 18 23 23 C 1.38802 * 119.99842 * 200.29315 * 21 19 18 24 24 N 1.31624 * 120.00367 * 15.02634 * 23 21 19 25 25 Si 1.86808 * 119.99781 * 195.02496 * 23 21 19 26 26 H 1.48497 * 109.47226 * 85.01351 * 25 23 21 27 27 H 1.48507 * 109.46903 * 205.01033 * 25 23 21 28 28 H 1.48495 * 109.47299 * 325.00575 * 25 23 21 29 29 H 1.09002 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47029 * 299.99605 * 1 2 3 31 31 H 1.09000 * 109.47022 * 59.99300 * 1 2 3 32 32 H 1.09002 * 109.47029 * 240.00395 * 2 1 3 33 33 H 1.08998 * 109.46776 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47481 * 300.00006 * 3 2 1 35 35 H 1.09002 * 109.46959 * 60.00352 * 3 2 1 36 36 H 1.08990 * 109.47663 * 305.00243 * 4 2 1 37 37 H 1.09009 * 109.47022 * 184.99598 * 4 2 1 38 38 H 1.07996 * 119.40827 * 180.02562 * 8 7 6 39 39 H 1.08005 * 120.26988 * 180.29714 * 9 8 7 40 40 H 1.08002 * 120.82247 * 179.72888 * 10 9 8 41 41 H 0.97009 * 120.00132 * 359.97438 * 14 12 11 42 42 H 1.08997 * 109.46866 * 299.99369 * 17 15 14 43 43 H 1.08996 * 109.46916 * 59.99485 * 17 15 14 44 44 H 1.08995 * 109.46895 * 179.97438 * 17 15 14 45 45 H 1.08990 * 109.47462 * 65.00030 * 18 15 14 46 46 H 1.09004 * 109.47118 * 185.00544 * 18 15 14 47 47 H 1.08998 * 109.46825 * 95.10874 * 20 19 18 48 48 H 1.08999 * 109.46971 * 215.10320 * 20 19 18 49 49 H 1.08995 * 109.47044 * 335.10709 * 20 19 18 50 50 H 0.97005 * 119.99850 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0982 1.1919 6 6 2.0384 -2.8827 2.2295 7 7 2.7246 -2.3614 3.2325 8 6 3.1115 -3.0889 4.2623 9 6 2.8092 -4.4368 4.3411 10 6 2.0983 -5.0356 3.3165 11 6 1.6982 -4.2437 2.2337 12 6 0.9333 -4.8300 1.1168 13 8 0.5909 -4.1320 0.1819 14 7 0.6130 -6.1390 1.1332 15 6 -0.1471 -6.7211 0.0243 16 1 0.1468 -6.2411 -0.9091 17 6 -1.6429 -6.5027 0.2612 18 6 0.1421 -8.2211 -0.0603 19 7 1.5875 -8.4345 -0.1675 20 6 2.2246 -8.4863 -1.4857 21 6 2.3431 -8.5854 0.9646 22 1 1.8729 -8.8740 1.8931 23 6 3.7132 -8.3677 0.9187 24 7 4.2458 -7.7399 -0.1083 25 14 4.8012 -8.9656 2.3145 26 1 5.1635 -10.3874 2.0856 27 1 6.0361 -8.1424 2.3670 28 1 4.0691 -8.8421 3.6006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2619 2.1369 37 1 3.1264 -0.6444 1.2951 38 1 3.6700 -2.6231 5.0606 39 1 3.1293 -5.0176 5.1936 40 1 1.8541 -6.0870 3.3533 41 1 0.8858 -6.6958 1.8792 42 1 -1.9368 -6.9827 1.1946 43 1 -1.8489 -5.4341 0.3216 44 1 -2.2084 -6.9354 -0.5640 45 1 -0.2325 -8.7145 0.8364 46 1 -0.3526 -8.6376 -0.9378 47 1 2.6157 -7.5009 -1.7392 48 1 3.0417 -9.2074 -1.4662 49 1 1.4905 -8.7889 -2.2323 50 1 5.2033 -7.5874 -0.1402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483411071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:28 Heat of formation + Delta-G solvation = -24.060935 kcal Electronic energy + Delta-G solvation = -30592.138385 eV Core-core repulsion = 26620.474385 eV Total energy + Delta-G solvation = -3971.664000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.61220 -38.72549 -37.99434 -36.20751 -35.20225 -33.90599 -32.68852 -31.14905 -30.50211 -29.62839 -27.16568 -26.49358 -26.16696 -25.60720 -24.41653 -22.80017 -21.83646 -20.66756 -20.13308 -19.60919 -18.31118 -17.24481 -16.77383 -16.54400 -16.09349 -15.32859 -14.99155 -14.77689 -14.68997 -14.32131 -14.15249 -13.86007 -13.69099 -13.33629 -13.05458 -12.94331 -12.76604 -12.71926 -12.55244 -12.21723 -12.19159 -12.10531 -11.80814 -11.38231 -11.32417 -11.29478 -11.06932 -10.87408 -10.72109 -10.68673 -10.54798 -10.39175 -10.24477 -10.06981 -9.83658 -9.75402 -9.70159 -9.04774 -8.58443 -8.36261 -8.10708 -6.81061 -5.75687 -3.19832 0.97170 1.45536 3.17559 3.29585 3.37240 3.40640 3.43960 3.85618 4.24028 4.41791 4.43920 4.78714 4.85588 4.97372 5.03100 5.11212 5.25610 5.34429 5.38798 5.45280 5.49864 5.53930 5.60486 5.64384 5.68076 5.75052 5.81612 5.92031 5.92424 6.01355 6.02149 6.07283 6.18702 6.25550 6.27392 6.29545 6.40184 6.47393 6.52902 6.57598 6.75160 6.92069 7.34619 7.37526 7.48579 7.67432 7.79093 7.91757 8.33182 8.37303 9.03405 9.17992 9.83343 10.33087 11.28336 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.004260 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.081804 B = 6571.941211 C = 7754.637435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 C -0.143 4.143 4 C 0.071 3.929 5 O -0.264 6.264 6 C 0.368 3.632 7 N -0.551 5.551 8 C 0.154 3.846 9 C -0.222 4.222 10 C -0.001 4.001 11 C -0.193 4.193 12 C 0.565 3.435 13 O -0.536 6.536 14 N -0.685 5.685 15 C 0.120 3.880 16 H 0.077 0.923 17 C -0.159 4.159 18 C 0.142 3.858 19 N -0.598 5.598 20 C 0.163 3.837 21 C -0.259 4.259 22 H 0.066 0.934 23 C 0.008 3.992 24 N -0.895 5.895 25 Si 0.893 3.107 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.400 0.600 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.029 0.971 48 H 0.042 0.958 49 H -0.003 1.003 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.412 10.697 6.303 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 C -0.200 4.200 4 C -0.005 4.005 5 O -0.168 6.168 6 C 0.188 3.812 7 N -0.276 5.276 8 C -0.002 4.002 9 C -0.243 4.243 10 C -0.027 4.027 11 C -0.199 4.199 12 C 0.351 3.649 13 O -0.415 6.415 14 N -0.335 5.335 15 C 0.013 3.987 16 H 0.095 0.905 17 C -0.218 4.218 18 C 0.013 3.987 19 N -0.320 5.320 20 C 0.019 3.981 21 C -0.389 4.389 22 H 0.084 0.916 23 C -0.191 4.191 24 N -0.539 5.539 25 Si 0.723 3.277 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.176 0.824 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.236 0.764 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.047 0.953 48 H 0.061 0.939 49 H 0.016 0.984 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.425 12.039 5.253 14.623 hybrid contribution 1.074 -1.307 1.332 2.153 sum -5.351 10.732 6.584 13.681 Atomic orbital electron populations 1.21808 0.94405 1.03072 1.01020 1.21131 0.97033 0.95473 0.97836 1.21758 1.01114 0.95017 1.02105 1.22745 0.99866 0.79342 0.98525 1.86525 1.71489 1.20917 1.37891 1.19803 0.87929 0.87776 0.85697 1.67421 1.16607 1.40135 1.03415 1.22512 0.93275 0.90843 0.93581 1.21893 1.04394 0.96515 1.01492 1.21746 0.90775 0.99833 0.90325 1.20179 1.08309 0.92098 0.99277 1.17605 0.79300 0.82597 0.85399 1.90744 1.54704 1.60777 1.35231 1.45581 1.55419 1.08328 1.24211 1.21806 0.88920 0.97675 0.90348 0.90472 1.22157 0.96971 1.01575 1.01126 1.21189 0.86686 0.91254 0.99526 1.43897 1.01418 1.83351 1.03329 1.20788 0.93768 1.00145 0.83424 1.19041 0.89593 1.40620 0.89637 0.91601 1.24924 0.97639 0.99081 0.97464 1.70092 1.11011 1.42079 1.30694 0.86471 0.80721 0.78570 0.81952 1.21470 1.21810 1.20456 0.91174 0.93187 0.92809 0.89950 0.92471 0.91933 0.92547 0.91939 0.91896 0.82367 0.84243 0.83545 0.76391 0.93102 0.92897 0.92305 0.93379 0.92932 0.95289 0.93922 0.98427 0.93748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.09 37.16 0.34 -1.47 16 2 C -0.10 -1.21 3.16 -90.62 -0.29 -1.50 16 3 C -0.14 -1.36 9.19 37.16 0.34 -1.02 16 4 C 0.07 1.03 4.69 37.15 0.17 1.20 16 5 O -0.26 -4.93 7.75 -39.73 -0.31 -5.24 16 6 C 0.37 6.82 7.51 -16.61 -0.12 6.70 16 7 N -0.55 -8.89 9.21 -12.98 -0.12 -9.01 16 8 C 0.15 2.06 11.17 -17.48 -0.20 1.86 16 9 C -0.22 -3.00 10.09 -39.50 -0.40 -3.39 16 10 C 0.00 -0.01 9.64 -38.89 -0.37 -0.39 16 11 C -0.19 -3.66 5.90 -104.69 -0.62 -4.28 16 12 C 0.57 11.96 7.74 -12.48 -0.10 11.87 16 13 O -0.54 -12.68 14.85 -16.48 -0.24 -12.93 16 14 N -0.69 -13.46 4.44 -54.85 -0.24 -13.70 16 15 C 0.12 2.27 2.88 -67.93 -0.20 2.08 16 16 H 0.08 1.69 7.58 -51.93 -0.39 1.30 16 17 C -0.16 -2.44 9.48 37.16 0.35 -2.09 16 18 C 0.14 2.71 5.36 -4.04 -0.02 2.69 16 19 N -0.60 -14.09 2.82 -181.12 -0.51 -14.61 16 20 C 0.16 3.99 9.02 59.85 0.54 4.53 16 21 C -0.26 -6.46 8.02 -15.06 -0.12 -6.58 16 22 H 0.07 1.56 7.86 -52.49 -0.41 1.15 16 23 C 0.01 0.22 5.06 -17.43 -0.09 0.13 16 24 N -0.89 -25.36 10.67 55.49 0.59 -24.77 16 25 Si 0.89 20.59 29.58 -169.99 -5.03 15.57 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 29 H 0.07 1.06 7.82 -51.93 -0.41 0.65 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 37 H 0.06 0.90 8.11 -51.92 -0.42 0.48 16 38 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.15 2.23 6.52 -52.49 -0.34 1.89 16 41 H 0.40 7.55 5.50 -40.82 -0.22 7.33 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 46 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 47 H 0.03 0.79 7.40 -51.93 -0.38 0.40 16 48 H 0.04 1.11 7.21 -51.93 -0.37 0.74 16 49 H 0.00 -0.06 7.83 -51.93 -0.41 -0.47 16 50 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -31.81 406.16 -8.91 -40.73 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -8.40 Total: 7.50 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.77 Total: 10.34 kcal Atomic # 7 Polarization: -61.80 SS G_CDS: -0.28 Total: -62.09 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.55 Total: -18.16 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.57 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.81 -8.91 -40.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483411071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.666 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds