Wall clock time and date at job start Tue Mar 31 2020 18:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46895 * 2 1 4 4 C 1.52993 * 109.46963 * 120.00062 * 2 1 3 5 5 O 1.42904 * 109.47063 * 65.00512 * 4 2 1 6 6 C 1.35422 * 116.99941 * 180.02562 * 5 4 2 7 7 N 1.32234 * 119.80240 * 359.97151 * 6 5 4 8 8 C 1.31884 * 121.80406 * 180.02562 * 7 6 5 9 9 C 1.38359 * 121.18110 * 359.71414 * 8 7 6 10 10 C 1.38338 * 119.45734 * 0.56143 * 9 8 7 11 11 C 1.39983 * 118.35153 * 359.45673 * 10 9 8 12 12 C 1.47525 * 120.59637 * 180.24734 * 11 10 9 13 13 O 1.21588 * 119.99772 * 179.97438 * 12 11 10 14 14 N 1.34768 * 120.00240 * 0.02562 * 12 11 10 15 15 C 1.46499 * 120.00436 * 179.97438 * 14 12 11 16 16 H 1.08997 * 109.46787 * 34.99426 * 15 14 12 17 17 C 1.53007 * 109.47017 * 275.00008 * 15 14 12 18 18 C 1.52995 * 109.47460 * 155.00051 * 15 14 12 19 19 N 1.46508 * 109.46848 * 304.99747 * 18 15 14 20 20 C 1.46501 * 120.00029 * 270.00052 * 19 18 15 21 21 C 1.36938 * 119.99779 * 90.00100 * 19 18 15 22 22 H 1.08002 * 119.99446 * 20.29684 * 21 19 18 23 23 C 1.38802 * 119.99842 * 200.29315 * 21 19 18 24 24 N 1.31624 * 120.00367 * 15.02634 * 23 21 19 25 25 Si 1.86808 * 119.99781 * 195.02496 * 23 21 19 26 26 H 1.48497 * 109.47226 * 85.01351 * 25 23 21 27 27 H 1.48507 * 109.46903 * 205.01033 * 25 23 21 28 28 H 1.48495 * 109.47299 * 325.00575 * 25 23 21 29 29 H 1.09002 * 109.47006 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47029 * 299.99605 * 1 2 3 31 31 H 1.09000 * 109.47022 * 59.99300 * 1 2 3 32 32 H 1.09002 * 109.47029 * 240.00395 * 2 1 3 33 33 H 1.08998 * 109.46776 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47481 * 300.00006 * 3 2 1 35 35 H 1.09002 * 109.46959 * 60.00352 * 3 2 1 36 36 H 1.08990 * 109.47663 * 305.00243 * 4 2 1 37 37 H 1.09009 * 109.47022 * 184.99598 * 4 2 1 38 38 H 1.07996 * 119.40827 * 180.02562 * 8 7 6 39 39 H 1.08005 * 120.26988 * 180.29714 * 9 8 7 40 40 H 1.08002 * 120.82247 * 179.72888 * 10 9 8 41 41 H 0.97009 * 120.00132 * 359.97438 * 14 12 11 42 42 H 1.08997 * 109.46866 * 299.99369 * 17 15 14 43 43 H 1.08996 * 109.46916 * 59.99485 * 17 15 14 44 44 H 1.08995 * 109.46895 * 179.97438 * 17 15 14 45 45 H 1.08990 * 109.47462 * 65.00030 * 18 15 14 46 46 H 1.09004 * 109.47118 * 185.00544 * 18 15 14 47 47 H 1.08998 * 109.46825 * 95.10874 * 20 19 18 48 48 H 1.08999 * 109.46971 * 215.10320 * 20 19 18 49 49 H 1.08995 * 109.47044 * 335.10709 * 20 19 18 50 50 H 0.97005 * 119.99850 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0982 1.1919 6 6 2.0384 -2.8827 2.2295 7 7 2.7246 -2.3614 3.2325 8 6 3.1115 -3.0889 4.2623 9 6 2.8092 -4.4368 4.3411 10 6 2.0983 -5.0356 3.3165 11 6 1.6982 -4.2437 2.2337 12 6 0.9333 -4.8300 1.1168 13 8 0.5909 -4.1320 0.1819 14 7 0.6130 -6.1390 1.1332 15 6 -0.1471 -6.7211 0.0243 16 1 0.1468 -6.2411 -0.9091 17 6 -1.6429 -6.5027 0.2612 18 6 0.1421 -8.2211 -0.0603 19 7 1.5875 -8.4345 -0.1675 20 6 2.2246 -8.4863 -1.4857 21 6 2.3431 -8.5854 0.9646 22 1 1.8729 -8.8740 1.8931 23 6 3.7132 -8.3677 0.9187 24 7 4.2458 -7.7399 -0.1083 25 14 4.8012 -8.9656 2.3145 26 1 5.1635 -10.3874 2.0856 27 1 6.0361 -8.1424 2.3670 28 1 4.0691 -8.8421 3.6006 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2619 2.1369 37 1 3.1264 -0.6444 1.2951 38 1 3.6700 -2.6231 5.0606 39 1 3.1293 -5.0176 5.1936 40 1 1.8541 -6.0870 3.3533 41 1 0.8858 -6.6958 1.8792 42 1 -1.9368 -6.9827 1.1946 43 1 -1.8489 -5.4341 0.3216 44 1 -2.2084 -6.9354 -0.5640 45 1 -0.2325 -8.7145 0.8364 46 1 -0.3526 -8.6376 -0.9378 47 1 2.6157 -7.5009 -1.7392 48 1 3.0417 -9.2074 -1.4662 49 1 1.4905 -8.7889 -2.2323 50 1 5.2033 -7.5874 -0.1402 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483411071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:27 Heat of formation + Delta-G solvation = -43.816840 kcal Electronic energy + Delta-G solvation = -30592.995065 eV Core-core repulsion = 26620.474385 eV Total energy + Delta-G solvation = -3972.520680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.89553 -40.25181 -39.21645 -37.94273 -36.26650 -35.64253 -34.04965 -32.92423 -31.83291 -31.06031 -28.08976 -28.03882 -27.58116 -27.35547 -25.72205 -24.05109 -23.51588 -22.19809 -21.32572 -21.08959 -19.58126 -18.85907 -18.29323 -18.01313 -17.32219 -16.86482 -16.73072 -15.99016 -15.94460 -15.72299 -15.49328 -15.39101 -15.17473 -14.82096 -14.55734 -14.41003 -14.04581 -13.94879 -13.83818 -13.56049 -13.31778 -13.30669 -13.09459 -13.03494 -12.84075 -12.70023 -12.49120 -12.34376 -12.15263 -12.08665 -11.93917 -11.92884 -11.73279 -11.65841 -11.61989 -11.07782 -10.98191 -10.58790 -10.52378 -9.84498 -9.46582 -8.77102 -7.74904 -5.20720 -0.28010 0.24193 1.47655 1.52521 1.58935 1.99248 2.00716 2.40151 2.55708 2.87972 3.27923 3.40888 3.71517 3.72167 3.81972 3.85658 3.87981 3.99540 4.10983 4.18685 4.27489 4.43112 4.45959 4.51692 4.52893 4.57776 4.62925 4.75393 4.77039 4.84416 4.88404 4.91918 4.93755 4.96060 5.01462 5.11273 5.14726 5.20637 5.29641 5.32760 5.36575 5.41385 5.45257 5.66952 5.73846 5.80669 6.26874 6.35344 6.68642 6.83107 7.18281 7.46299 7.92178 8.38666 9.28931 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.004260 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.081804 B = 6571.941211 C = 7754.637435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 C -0.134 4.134 4 C 0.069 3.931 5 O -0.293 6.293 6 C 0.348 3.652 7 N -0.557 5.557 8 C 0.161 3.839 9 C -0.211 4.211 10 C -0.008 4.008 11 C -0.230 4.230 12 C 0.556 3.444 13 O -0.576 6.576 14 N -0.682 5.682 15 C 0.122 3.878 16 H 0.036 0.964 17 C -0.145 4.145 18 C 0.142 3.858 19 N -0.611 5.611 20 C 0.179 3.821 21 C -0.248 4.248 22 H 0.086 0.914 23 C -0.047 4.047 24 N -0.937 5.937 25 Si 0.950 3.050 26 H -0.295 1.295 27 H -0.309 1.309 28 H -0.247 1.247 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.060 0.940 38 H 0.207 0.793 39 H 0.180 0.820 40 H 0.153 0.847 41 H 0.404 0.596 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.082 0.918 45 H 0.072 0.928 46 H 0.074 0.926 47 H -0.011 1.011 48 H 0.018 0.982 49 H 0.028 0.972 50 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.135 10.580 9.347 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 C -0.192 4.192 4 C -0.006 4.006 5 O -0.198 6.198 6 C 0.168 3.832 7 N -0.282 5.282 8 C 0.005 3.995 9 C -0.231 4.231 10 C -0.034 4.034 11 C -0.236 4.236 12 C 0.344 3.656 13 O -0.458 6.458 14 N -0.332 5.332 15 C 0.015 3.985 16 H 0.055 0.945 17 C -0.204 4.204 18 C 0.015 3.985 19 N -0.333 5.333 20 C 0.034 3.966 21 C -0.378 4.378 22 H 0.103 0.897 23 C -0.243 4.243 24 N -0.584 5.584 25 Si 0.779 3.221 26 H -0.222 1.222 27 H -0.236 1.236 28 H -0.171 1.171 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.223 0.777 39 H 0.198 0.802 40 H 0.171 0.829 41 H 0.241 0.759 42 H 0.092 0.908 43 H 0.054 0.946 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.007 0.993 48 H 0.037 0.963 49 H 0.047 0.953 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.204 11.895 8.332 16.211 hybrid contribution 1.267 -1.276 0.421 1.847 sum -5.936 10.619 8.753 14.987 Atomic orbital electron populations 1.21745 0.94310 1.01094 1.02563 1.21186 0.97142 0.97120 0.96043 1.21715 1.01359 0.92622 1.03461 1.22947 0.99819 0.78003 0.99796 1.86502 1.72009 1.22609 1.38700 1.20006 0.88827 0.87883 0.86447 1.67525 1.16467 1.40557 1.03613 1.23405 0.91770 0.91062 0.93306 1.22350 1.02450 0.96840 1.01464 1.21951 0.91106 1.00023 0.90279 1.20187 1.10373 0.93030 1.00023 1.18080 0.79072 0.82803 0.85689 1.90705 1.56443 1.61688 1.36948 1.45593 1.55280 1.08020 1.24283 1.21732 0.91142 0.96988 0.88663 0.94526 1.22018 0.94223 1.00920 1.03234 1.21398 0.84176 0.91255 1.01657 1.44155 1.03231 1.83303 1.02627 1.20473 0.93896 0.97241 0.85039 1.19484 0.89669 1.38227 0.90420 0.89654 1.25630 0.99148 0.99895 0.99578 1.70314 1.10199 1.44662 1.33200 0.85525 0.78621 0.76945 0.80980 1.22217 1.23637 1.17065 0.94835 0.91701 0.91137 0.92208 0.92060 0.90548 0.91168 0.90966 0.92150 0.77656 0.80221 0.82929 0.75917 0.90847 0.94599 0.89964 0.90974 0.90779 0.99308 0.96322 0.95340 0.95114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.09 71.98 0.65 -2.91 16 2 C -0.10 -2.50 3.16 -10.79 -0.03 -2.53 16 3 C -0.13 -2.42 9.19 71.98 0.66 -1.75 16 4 C 0.07 2.08 4.69 71.98 0.34 2.42 16 5 O -0.29 -11.62 7.75 -66.35 -0.51 -12.14 16 6 C 0.35 13.25 7.51 85.13 0.64 13.89 16 7 N -0.56 -17.42 9.21 -308.00 -2.84 -20.25 16 8 C 0.16 3.78 11.17 84.71 0.95 4.73 16 9 C -0.21 -4.99 10.09 22.32 0.23 -4.76 16 10 C -0.01 -0.24 9.64 22.72 0.22 -0.02 16 11 C -0.23 -8.98 5.90 -19.91 -0.12 -9.10 16 12 C 0.56 24.69 7.74 86.69 0.67 25.37 16 13 O -0.58 -29.30 14.85 16.82 0.25 -29.05 16 14 N -0.68 -27.16 4.44 -445.73 -1.98 -29.14 16 15 C 0.12 4.63 2.88 44.99 0.13 4.76 16 16 H 0.04 1.68 7.58 -2.39 -0.02 1.67 16 17 C -0.15 -4.28 9.48 71.98 0.68 -3.60 16 18 C 0.14 5.17 5.36 86.38 0.46 5.63 16 19 N -0.61 -28.55 2.82 -726.95 -2.05 -30.60 16 20 C 0.18 8.93 9.02 127.77 1.15 10.09 16 21 C -0.25 -12.11 8.02 84.03 0.67 -11.44 16 22 H 0.09 3.80 7.86 -2.91 -0.02 3.77 16 23 C -0.05 -2.49 5.06 84.86 0.43 -2.06 16 24 N -0.94 -55.08 10.67 21.65 0.23 -54.85 16 25 Si 0.95 41.89 29.58 68.60 2.03 43.91 16 26 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 27 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 28 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 29 H 0.03 1.09 7.82 -2.39 -0.02 1.07 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.97 8.10 -2.39 -0.02 1.95 16 37 H 0.06 1.79 8.11 -2.38 -0.02 1.77 16 38 H 0.21 2.79 8.06 -2.91 -0.02 2.76 16 39 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 40 H 0.15 4.40 6.52 -2.91 -0.02 4.38 16 41 H 0.40 15.03 5.50 -92.70 -0.51 14.52 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.07 2.33 8.03 -2.39 -0.02 2.31 16 46 H 0.07 2.40 7.86 -2.38 -0.02 2.38 16 47 H -0.01 -0.66 7.40 -2.39 -0.02 -0.68 16 48 H 0.02 0.98 7.21 -2.39 -0.02 0.96 16 49 H 0.03 1.21 7.83 -2.39 -0.02 1.19 16 50 H 0.24 14.11 8.31 -92.70 -0.77 13.34 16 Total: -1.00 -74.63 406.16 3.27 -71.36 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.41 Total: 32.07 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: 7.73 Total: 28.70 kcal Atomic # 7 Polarization: -128.22 SS G_CDS: -6.63 Total: -134.85 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.26 Total: -41.19 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -74.63 3.27 -71.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483411071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.538 kcal (2) G-P(sol) polarization free energy of solvation -74.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds