Wall clock time and date at job start Tue Mar 31 2020 18:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47071 * 2 1 4 4 C 1.52994 * 109.47231 * 120.00250 * 2 1 3 5 5 O 1.42900 * 109.47271 * 174.99716 * 4 2 1 6 6 C 1.35424 * 117.00250 * 179.97438 * 5 4 2 7 7 N 1.32236 * 119.80003 * 359.97438 * 6 5 4 8 8 C 1.31879 * 121.80198 * 179.97438 * 7 6 5 9 9 C 1.38352 * 121.18426 * 0.02562 * 8 7 6 10 10 C 1.38332 * 119.45972 * 359.69688 * 9 8 7 11 11 C 1.39992 * 118.34558 * 0.56428 * 10 9 8 12 12 C 1.47526 * 120.59558 * 179.70786 * 11 10 9 13 13 O 1.21582 * 120.00008 * 179.71952 * 12 11 10 14 14 N 1.34785 * 119.99991 * 359.72848 * 12 11 10 15 15 C 1.46493 * 119.99859 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.47848 * 325.00355 * 15 14 12 17 17 C 1.53006 * 109.47012 * 84.99816 * 15 14 12 18 18 C 1.53002 * 109.47277 * 204.99764 * 15 14 12 19 19 N 1.46496 * 109.46846 * 55.00677 * 18 15 14 20 20 C 1.46506 * 119.99539 * 269.99835 * 19 18 15 21 21 C 1.36931 * 120.00498 * 89.99741 * 19 18 15 22 22 H 1.08000 * 119.99938 * 23.67445 * 21 19 18 23 23 C 1.38815 * 120.00365 * 203.66769 * 21 19 18 24 24 N 1.31614 * 119.99569 * 11.22795 * 23 21 19 25 25 Si 1.86800 * 120.00219 * 191.23079 * 23 21 19 26 26 H 1.48496 * 109.47254 * 90.00024 * 25 23 21 27 27 H 1.48496 * 109.47014 * 210.00067 * 25 23 21 28 28 H 1.48506 * 109.46852 * 330.00023 * 25 23 21 29 29 H 1.09008 * 109.46666 * 299.99817 * 1 2 3 30 30 H 1.08995 * 109.47003 * 59.99822 * 1 2 3 31 31 H 1.08997 * 109.46946 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46679 * 240.00334 * 2 1 3 33 33 H 1.09000 * 109.47143 * 300.00681 * 3 2 1 34 34 H 1.09002 * 109.46796 * 60.00524 * 3 2 1 35 35 H 1.09004 * 109.46992 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.47259 * 54.99892 * 4 2 1 37 37 H 1.08997 * 109.47505 * 294.99798 * 4 2 1 38 38 H 1.08002 * 119.40951 * 179.97438 * 8 7 6 39 39 H 1.08001 * 120.26797 * 179.97438 * 9 8 7 40 40 H 1.08005 * 120.83045 * 180.27712 * 10 9 8 41 41 H 0.96993 * 119.99986 * 359.97438 * 14 12 11 42 42 H 1.09004 * 109.47004 * 179.97438 * 17 15 14 43 43 H 1.08999 * 109.47388 * 300.00125 * 17 15 14 44 44 H 1.09002 * 109.46948 * 60.00135 * 17 15 14 45 45 H 1.09006 * 109.47033 * 174.99929 * 18 15 14 46 46 H 1.08994 * 109.46984 * 295.00050 * 18 15 14 47 47 H 1.09001 * 109.47223 * 94.62154 * 20 19 18 48 48 H 1.09003 * 109.46927 * 214.61978 * 20 19 18 49 49 H 1.09000 * 109.47636 * 334.62091 * 20 19 18 50 50 H 0.97001 * 120.00155 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8239 1.1919 6 6 4.0785 -1.4403 2.2295 7 7 3.3583 -1.9126 3.2330 8 6 3.9152 -2.5199 4.2627 9 6 5.2862 -2.6898 4.3385 10 6 6.0876 -2.2202 3.3135 11 6 5.4748 -1.5738 2.2335 12 6 6.2826 -1.0479 1.1166 13 8 5.7387 -0.4929 0.1816 14 7 7.6236 -1.1829 1.1327 15 6 8.4256 -0.6611 0.0234 16 1 7.8749 -0.7784 -0.9099 17 6 8.7188 0.8219 0.2594 18 6 9.7431 -1.4343 -0.0613 19 7 9.4619 -2.8681 -0.1677 20 6 9.3447 -3.6834 1.0439 21 6 9.3084 -3.4462 -1.3995 22 1 9.7509 -2.9863 -2.2707 23 6 8.5843 -4.6235 -1.5284 24 7 7.8635 -5.0663 -0.5202 25 14 8.6330 -5.5791 -3.1327 26 1 9.7466 -6.5606 -3.0907 27 1 7.3469 -6.2974 -3.3202 28 1 8.8441 -4.6389 -4.2627 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8899 34 1 1.6768 1.9563 0.8901 35 1 3.1301 1.4425 -0.0005 36 1 1.6055 -1.7198 1.2951 37 1 1.7518 -0.1584 2.1369 38 1 3.2900 -2.8905 5.0615 39 1 5.7266 -3.1891 5.1889 40 1 7.1599 -2.3449 3.3478 41 1 8.0575 -1.6254 1.8788 42 1 9.3160 1.2100 -0.5658 43 1 7.7802 1.3728 0.3197 44 1 9.2696 0.9393 1.1927 45 1 10.3006 -1.1073 -0.9391 46 1 10.3335 -1.2454 0.8353 47 1 8.2961 -3.7580 1.3317 48 1 9.7401 -4.6806 0.8504 49 1 9.9108 -3.2184 1.8510 50 1 7.3571 -5.8888 -0.6103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483411074.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:29 Heat of formation + Delta-G solvation = -44.784737 kcal Electronic energy + Delta-G solvation = -30393.151185 eV Core-core repulsion = 26420.588534 eV Total energy + Delta-G solvation = -3972.562651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.90667 -40.29730 -39.21846 -37.96306 -36.27564 -35.69376 -34.05157 -32.90391 -31.87804 -31.14233 -28.10064 -27.96706 -27.59073 -27.39513 -25.73980 -24.04504 -23.50429 -22.16494 -21.45012 -21.12563 -19.58601 -18.78552 -18.52048 -17.99611 -17.32572 -16.92560 -16.69782 -16.01333 -15.97153 -15.74728 -15.55847 -15.33917 -15.13120 -14.98897 -14.57902 -14.38462 -14.06123 -13.95591 -13.76029 -13.56347 -13.38234 -13.29961 -13.08077 -13.04429 -12.83583 -12.66081 -12.54452 -12.34754 -12.28789 -12.09742 -12.04299 -11.83285 -11.74277 -11.69422 -11.62755 -11.08183 -10.98481 -10.64506 -10.53863 -9.91916 -9.47654 -8.70320 -7.81931 -5.27678 -0.27840 0.25835 1.41946 1.43677 1.50807 1.99014 2.00061 2.33860 2.50662 2.87708 3.28321 3.32642 3.70853 3.72227 3.81028 3.82545 3.87183 3.99580 4.10531 4.20288 4.27151 4.41865 4.44249 4.51031 4.52953 4.57075 4.61774 4.74401 4.77704 4.85013 4.88423 4.91101 4.93469 4.95041 5.01434 5.11167 5.13983 5.21767 5.28864 5.35807 5.38037 5.39626 5.46716 5.65906 5.74533 5.81166 6.27416 6.35178 6.66014 6.79567 7.19190 7.41936 7.91487 8.31389 9.20008 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.003786 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.006189 B = 7393.870454 C = 7769.678547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.140 4.140 4 C 0.070 3.930 5 O -0.296 6.296 6 C 0.347 3.653 7 N -0.558 5.558 8 C 0.160 3.840 9 C -0.205 4.205 10 C -0.007 4.007 11 C -0.233 4.233 12 C 0.556 3.444 13 O -0.573 6.573 14 N -0.689 5.689 15 C 0.124 3.876 16 H 0.033 0.967 17 C -0.145 4.145 18 C 0.143 3.857 19 N -0.611 5.611 20 C 0.173 3.827 21 C -0.260 4.260 22 H 0.066 0.934 23 C -0.047 4.047 24 N -0.928 5.928 25 Si 0.956 3.044 26 H -0.281 1.281 27 H -0.302 1.302 28 H -0.274 1.274 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.207 0.793 39 H 0.186 0.814 40 H 0.158 0.842 41 H 0.401 0.599 42 H 0.077 0.923 43 H 0.035 0.965 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.012 0.988 48 H 0.011 0.989 49 H 0.039 0.961 50 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 9.462 13.417 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.116 4.116 3 C -0.197 4.197 4 C -0.005 4.005 5 O -0.201 6.201 6 C 0.167 3.833 7 N -0.283 5.283 8 C 0.004 3.996 9 C -0.225 4.225 10 C -0.032 4.032 11 C -0.239 4.239 12 C 0.344 3.656 13 O -0.454 6.454 14 N -0.339 5.339 15 C 0.016 3.984 16 H 0.052 0.948 17 C -0.203 4.203 18 C 0.016 3.984 19 N -0.333 5.333 20 C 0.028 3.972 21 C -0.391 4.391 22 H 0.084 0.916 23 C -0.242 4.242 24 N -0.574 5.574 25 Si 0.786 3.214 26 H -0.208 1.208 27 H -0.230 1.230 28 H -0.199 1.199 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.223 0.777 39 H 0.203 0.797 40 H 0.176 0.824 41 H 0.237 0.763 42 H 0.096 0.904 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.030 0.970 48 H 0.030 0.970 49 H 0.058 0.942 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.877 9.954 12.434 18.234 hybrid contribution 0.679 -1.302 -0.929 1.737 sum -8.199 8.652 11.505 16.566 Atomic orbital electron populations 1.21715 0.91197 1.02759 1.03468 1.21191 0.97664 0.96652 0.96094 1.21742 1.00242 0.95143 1.02575 1.22928 0.76961 1.00854 0.99710 1.86505 1.23846 1.70853 1.38893 1.20028 0.88469 0.88345 0.86417 1.67527 1.40286 1.16883 1.03624 1.23449 0.94104 0.88893 0.93191 1.22365 0.94451 1.04266 1.01406 1.21948 1.01852 0.89354 0.90085 1.20177 0.91980 1.11616 1.00118 1.18154 0.82808 0.78933 0.85733 1.90725 1.72288 1.45439 1.36954 1.45588 1.05314 1.58981 1.24036 1.21681 0.94088 0.94033 0.88550 0.94825 1.22014 1.01056 0.94015 1.03256 1.21380 0.92882 0.82709 1.01414 1.44079 1.83036 1.03387 1.02819 1.20664 0.97443 0.93044 0.86062 1.19468 1.26069 1.06073 0.87488 0.91636 1.25646 0.97440 1.01278 0.99871 1.70181 1.32392 1.22890 1.31955 0.85425 0.76279 0.78917 0.80801 1.20788 1.22953 1.19912 0.91058 0.90644 0.92046 0.92405 0.91237 0.91574 0.94889 0.92118 0.90863 0.77690 0.79684 0.82448 0.76254 0.90387 0.94604 0.90375 0.91758 0.90264 0.96967 0.97003 0.94221 0.94835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.19 71.98 0.66 -1.77 16 2 C -0.10 -2.55 3.16 -10.79 -0.03 -2.59 16 3 C -0.14 -3.61 9.09 71.98 0.65 -2.95 16 4 C 0.07 2.10 4.69 71.98 0.34 2.43 16 5 O -0.30 -11.61 7.75 -66.38 -0.51 -12.13 16 6 C 0.35 12.73 7.51 85.13 0.64 13.37 16 7 N -0.56 -16.55 9.21 -308.01 -2.84 -19.38 16 8 C 0.16 3.36 11.17 84.71 0.95 4.31 16 9 C -0.21 -4.06 10.09 22.32 0.23 -3.84 16 10 C -0.01 -0.18 9.64 22.72 0.22 0.04 16 11 C -0.23 -8.56 5.90 -19.91 -0.12 -8.68 16 12 C 0.56 24.03 7.74 86.69 0.67 24.70 16 13 O -0.57 -29.28 14.85 16.84 0.25 -29.03 16 14 N -0.69 -26.17 4.37 -445.71 -1.95 -28.12 16 15 C 0.12 4.77 2.88 45.00 0.13 4.90 16 16 H 0.03 1.65 7.58 -2.39 -0.02 1.63 16 17 C -0.14 -4.31 9.48 71.98 0.68 -3.63 16 18 C 0.14 5.32 5.33 86.38 0.46 5.78 16 19 N -0.61 -29.00 2.78 -726.92 -2.02 -31.01 16 20 C 0.17 7.74 7.60 127.77 0.97 8.71 16 21 C -0.26 -14.31 9.66 84.04 0.81 -13.50 16 22 H 0.07 3.55 7.85 -2.91 -0.02 3.53 16 23 C -0.05 -2.66 5.13 84.86 0.44 -2.23 16 24 N -0.93 -55.02 10.66 21.65 0.23 -54.78 16 25 Si 0.96 46.72 29.57 68.60 2.03 48.75 16 26 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 27 H -0.30 -15.18 7.11 99.48 0.71 -14.47 16 28 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 29 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.03 1.08 7.82 -2.39 -0.02 1.06 16 36 H 0.06 1.78 8.11 -2.39 -0.02 1.76 16 37 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 38 H 0.21 2.31 8.06 -2.91 -0.02 2.29 16 39 H 0.19 2.02 8.06 -2.91 -0.02 1.99 16 40 H 0.16 3.62 6.52 -2.91 -0.02 3.60 16 41 H 0.40 13.19 5.27 -92.71 -0.49 12.70 16 42 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.06 2.34 8.03 -2.38 -0.02 2.32 16 46 H 0.08 2.38 7.86 -2.39 -0.02 2.36 16 47 H 0.01 0.59 6.90 -2.39 -0.02 0.57 16 48 H 0.01 0.57 7.30 -2.39 -0.02 0.56 16 49 H 0.04 1.39 7.84 -2.39 -0.02 1.37 16 50 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -79.06 405.65 3.32 -75.74 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 0.43 Total: 24.90 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 7.69 Total: 25.06 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -6.57 Total: -133.30 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -0.26 Total: -41.16 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -79.06 3.32 -75.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483411074.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.956 kcal (2) G-P(sol) polarization free energy of solvation -79.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds