Wall clock time and date at job start Tue Mar 31 2020 19:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47623 * 2 1 4 4 C 1.36441 * 124.85211 * 265.00525 * 3 2 1 5 5 C 1.34489 * 108.85595 * 179.97438 * 4 3 2 6 6 C 1.46690 * 106.33118 * 359.97438 * 5 4 3 7 7 C 1.47268 * 126.94040 * 180.02562 * 6 5 4 8 8 O 1.21624 * 119.99822 * 179.97438 * 7 6 5 9 9 N 1.34782 * 119.99857 * 359.97438 * 7 6 5 10 10 C 1.46496 * 119.99402 * 174.69424 * 9 7 6 11 11 C 1.52998 * 109.54561 * 304.10046 * 10 9 7 12 12 N 1.46506 * 109.47144 * 305.58829 * 11 10 9 13 13 C 1.36937 * 119.99963 * 175.02658 * 12 11 10 14 14 H 1.08003 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.38810 * 119.99695 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00354 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99703 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47407 * 89.99814 * 17 15 13 19 19 H 1.48499 * 109.47054 * 209.99988 * 17 15 13 20 20 H 1.48500 * 109.47134 * 329.99803 * 17 15 13 21 21 C 1.53181 * 109.54034 * 183.92722 * 10 9 7 22 22 C 1.53282 * 109.06219 * 297.02911 * 21 10 9 23 23 O 1.42907 * 109.46316 * 302.44589 * 22 21 10 24 24 C 1.42907 * 114.09704 * 61.15508 * 23 22 21 25 25 C 1.53090 * 109.41507 * 298.84731 * 24 23 22 26 26 C 1.34661 * 124.84829 * 84.99816 * 3 2 1 27 27 C 1.50701 * 125.80059 * 0.02562 * 26 3 2 28 28 H 1.08998 * 109.46902 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47222 * 299.99772 * 1 2 3 30 30 H 1.08999 * 109.46874 * 59.99603 * 1 2 3 31 31 H 1.09001 * 109.47222 * 240.00228 * 2 1 3 32 32 H 1.08995 * 109.47354 * 120.00417 * 2 1 3 33 33 H 1.07995 * 125.57471 * 359.97438 * 4 3 2 34 34 H 1.08003 * 126.83612 * 180.26453 * 5 4 3 35 35 H 0.96994 * 120.00209 * 354.69266 * 9 7 6 36 36 H 1.08997 * 109.47139 * 65.58449 * 11 10 9 37 37 H 1.09000 * 109.47210 * 185.59141 * 11 10 9 38 38 H 0.96995 * 119.99780 * 355.02248 * 12 11 10 39 39 H 0.96998 * 119.99726 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.52720 * 57.01461 * 21 10 9 41 41 H 1.09005 * 109.52633 * 177.21083 * 21 10 9 42 42 H 1.09003 * 109.46354 * 182.45036 * 22 21 10 43 43 H 1.09004 * 109.46879 * 62.44717 * 22 21 10 44 44 H 1.08998 * 109.48099 * 178.86117 * 24 23 22 45 45 H 1.09001 * 109.48583 * 58.83332 * 24 23 22 46 46 H 1.09001 * 109.52147 * 297.69952 * 25 24 23 47 47 H 1.09002 * 109.57621 * 177.54333 * 25 24 23 48 48 H 1.08994 * 109.47200 * 270.00282 * 27 26 3 49 49 H 1.08999 * 109.47044 * 30.00533 * 27 26 3 50 50 H 1.09001 * 109.46891 * 150.00119 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3703 2.0838 -1.1154 5 6 2.7704 3.3135 -0.7463 6 6 2.6519 3.3645 0.7150 7 6 2.9726 4.5051 1.5897 8 8 2.8257 4.4086 2.7931 9 7 3.4290 5.6558 1.0565 10 6 3.6376 6.8270 1.9114 11 6 2.3381 7.1624 2.6459 12 7 1.2545 7.3224 1.6730 13 6 -0.0290 7.5261 2.1049 14 1 -0.2425 7.5684 3.1628 15 6 -1.0557 7.6771 1.1830 16 7 -0.7956 7.6251 -0.1061 17 14 -2.8066 7.9543 1.7722 18 1 -3.0558 9.4111 1.9158 19 1 -3.7574 7.3845 0.7840 20 1 -2.9984 7.2875 3.0851 21 6 4.0623 8.0206 1.0504 22 6 5.4045 7.7031 0.3817 23 8 6.3772 7.4034 1.3848 24 6 6.0541 6.2678 2.1899 25 6 4.7401 6.5270 2.9316 26 6 2.1841 2.1387 1.1009 27 6 1.9013 1.7091 2.5174 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3335 1.7130 -2.1291 34 1 3.1070 4.1074 -1.3966 35 1 3.6194 5.7083 0.1069 36 1 2.0913 6.3548 3.3350 37 1 2.4652 8.0901 3.2039 38 1 1.4462 7.2841 0.7230 39 1 -1.5131 7.7310 -0.7502 40 1 3.3072 8.2058 0.2865 41 1 4.1694 8.9041 1.6799 42 1 5.7343 8.5652 -0.1982 43 1 5.2870 6.8441 -0.2789 44 1 6.8516 6.0958 2.9127 45 1 5.9450 5.3898 1.5532 46 1 4.8608 7.3803 3.5990 47 1 4.4686 5.6456 3.5126 48 1 0.8678 1.9464 2.7696 49 1 2.0603 0.6347 2.6099 50 1 2.5713 2.2354 3.1973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484867471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:06 Heat of formation + Delta-G solvation = -23.033095 kcal Electronic energy + Delta-G solvation = -31050.033567 eV Core-core repulsion = 27078.414137 eV Total energy + Delta-G solvation = -3971.619429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.24224 -40.08454 -37.89067 -35.53305 -34.08937 -33.49293 -31.56000 -31.35407 -30.90600 -30.27787 -29.10648 -26.50824 -26.04906 -23.97679 -23.60246 -23.21173 -22.05572 -21.33035 -20.25861 -18.76667 -18.61836 -17.28840 -17.10265 -16.17315 -15.79094 -15.54612 -15.25855 -15.09756 -14.72242 -14.54800 -14.24692 -14.00049 -13.70248 -13.43099 -13.20355 -13.06424 -12.86151 -12.77335 -12.59070 -12.57429 -12.26014 -12.19848 -12.09454 -11.88748 -11.62866 -11.44849 -11.37467 -11.29545 -11.05176 -10.82009 -10.75335 -10.36529 -10.18841 -9.97978 -9.59974 -9.36260 -9.04962 -8.67756 -8.44974 -8.28776 -7.88004 -6.74168 -5.64959 -2.90122 2.10819 2.65047 2.88072 3.49567 3.54562 3.56704 3.81610 4.07343 4.16227 4.47659 4.68889 4.77495 4.84656 4.95789 4.96154 5.07931 5.15834 5.21938 5.29364 5.35414 5.37120 5.39283 5.43631 5.58420 5.62870 5.70479 5.75830 5.85954 5.86543 5.88207 5.91303 6.07263 6.11881 6.16985 6.21756 6.24442 6.35204 6.44763 6.46343 6.62667 6.71323 7.00972 7.04651 7.25593 7.29072 7.37942 7.41467 7.82359 8.21095 8.54587 8.98203 9.65975 10.25406 10.61376 11.58292 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006964 B = 0.005756 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4019.890178 B = 4862.919148 C = 7708.079009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.444 5.444 4 C -0.023 4.023 5 C -0.162 4.162 6 C -0.224 4.224 7 C 0.605 3.395 8 O -0.547 6.547 9 N -0.710 5.710 10 C 0.177 3.823 11 C 0.142 3.858 12 N -0.723 5.723 13 C -0.225 4.225 14 H 0.067 0.933 15 C -0.016 4.016 16 N -0.935 5.935 17 Si 0.902 3.098 18 H -0.291 1.291 19 H -0.294 1.294 20 H -0.284 1.284 21 C -0.155 4.155 22 C 0.061 3.939 23 O -0.387 6.387 24 C 0.066 3.934 25 C -0.162 4.162 26 C 0.102 3.898 27 C -0.090 4.090 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.142 0.858 35 H 0.393 0.607 36 H 0.050 0.950 37 H 0.017 0.983 38 H 0.382 0.618 39 H 0.251 0.749 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.094 0.906 48 H 0.076 0.924 49 H 0.055 0.945 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.837 -13.880 -2.040 18.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.122 5.122 4 C -0.149 4.149 5 C -0.186 4.186 6 C -0.234 4.234 7 C 0.395 3.605 8 O -0.426 6.426 9 N -0.360 5.360 10 C 0.091 3.909 11 C 0.014 3.986 12 N -0.367 5.367 13 C -0.357 4.357 14 H 0.085 0.915 15 C -0.212 4.212 16 N -0.585 5.585 17 Si 0.734 3.266 18 H -0.219 1.219 19 H -0.220 1.220 20 H -0.209 1.209 21 C -0.193 4.193 22 C -0.015 4.015 23 O -0.306 6.306 24 C -0.010 4.010 25 C -0.201 4.201 26 C -0.014 4.014 27 C -0.147 4.147 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.179 0.821 34 H 0.159 0.841 35 H 0.227 0.773 36 H 0.068 0.932 37 H 0.035 0.965 38 H 0.216 0.784 39 H 0.061 0.939 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.066 0.934 46 H 0.093 0.907 47 H 0.113 0.887 48 H 0.094 0.906 49 H 0.074 0.926 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.622 -14.143 -1.072 18.337 hybrid contribution -1.441 0.084 -0.856 1.678 sum 10.181 -14.059 -1.928 17.465 Atomic orbital electron populations 1.22179 0.94264 1.02757 1.03785 1.21817 0.95699 0.80767 1.04013 1.43650 1.50815 1.11787 1.05911 1.21557 1.08717 0.93564 0.91014 1.21968 1.06410 0.96715 0.93497 1.20179 1.15073 0.94746 0.93389 1.17087 0.75275 0.81401 0.86784 1.90630 1.54118 1.82910 1.14979 1.45658 1.68039 1.10975 1.11368 1.20499 0.95621 0.84297 0.90482 1.21072 0.86420 0.98082 0.93002 1.42189 1.02962 1.87091 1.04435 1.19216 0.84576 1.39805 0.92065 0.91505 1.24646 0.97639 1.03592 0.95288 1.69648 1.31234 1.58064 0.99538 0.86240 0.85324 0.77642 0.77365 1.21913 1.22007 1.20943 1.22467 0.97467 0.98250 1.01098 1.22624 0.88692 1.00260 0.89960 1.87878 1.45798 1.48872 1.48047 1.22504 0.96784 0.88097 0.93650 1.22549 0.94550 1.04182 0.98850 1.20222 1.01147 0.90833 0.89222 1.20520 1.03936 1.00159 0.90095 0.90903 0.91530 0.91659 0.89259 0.89470 0.82092 0.84074 0.77309 0.93167 0.96522 0.78436 0.93875 0.89266 0.89700 0.88969 0.93534 0.89490 0.93363 0.90702 0.88716 0.90571 0.92610 0.88170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.16 0.38 -1.10 16 2 C 0.10 0.83 6.45 -4.04 -0.03 0.81 16 3 N -0.44 -5.57 2.69 -112.53 -0.30 -5.87 16 4 C -0.02 -0.29 11.33 -16.83 -0.19 -0.48 16 5 C -0.16 -2.39 10.56 -37.50 -0.40 -2.79 16 6 C -0.22 -3.87 6.29 -103.35 -0.65 -4.52 16 7 C 0.61 11.43 7.22 -12.59 -0.09 11.34 16 8 O -0.55 -11.42 11.12 5.26 0.06 -11.36 16 9 N -0.71 -12.10 3.75 -48.55 -0.18 -12.29 16 10 C 0.18 3.07 0.32 -131.64 -0.04 3.03 16 11 C 0.14 3.14 4.79 -4.04 -0.02 3.12 16 12 N -0.72 -18.81 5.21 -59.91 -0.31 -19.12 16 13 C -0.23 -6.57 9.99 -15.06 -0.15 -6.72 16 14 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 15 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 16 N -0.94 -28.68 13.06 55.49 0.72 -27.96 16 17 Si 0.90 23.33 29.55 -169.99 -5.02 18.30 16 18 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 19 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 20 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 21 C -0.15 -2.42 4.84 -26.49 -0.13 -2.55 16 22 C 0.06 0.81 6.67 37.30 0.25 1.06 16 23 O -0.39 -5.58 10.77 -35.23 -0.38 -5.96 16 24 C 0.07 0.91 6.68 37.20 0.25 1.15 16 25 C -0.16 -2.52 4.82 -26.59 -0.13 -2.65 16 26 C 0.10 1.56 6.89 -81.88 -0.56 1.00 16 27 C -0.09 -1.23 9.52 36.01 0.34 -0.89 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.09 0.62 7.05 -51.93 -0.37 0.26 16 33 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.14 1.85 7.71 -52.48 -0.40 1.45 16 35 H 0.39 6.05 6.55 -40.82 -0.27 5.78 16 36 H 0.05 1.23 6.25 -51.93 -0.32 0.90 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.38 10.22 6.51 -40.82 -0.27 9.95 16 39 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 40 H 0.09 1.53 7.22 -51.93 -0.37 1.16 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.05 0.57 7.01 -51.93 -0.36 0.20 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.05 0.66 7.75 -51.93 -0.40 0.26 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.09 1.61 6.25 -51.93 -0.32 1.28 16 48 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.06 0.57 7.02 -51.93 -0.36 0.21 16 50 H 0.10 1.52 6.47 -51.93 -0.34 1.19 16 LS Contribution 390.93 15.07 5.89 5.89 Total: -1.00 -34.89 390.93 -8.78 -43.67 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -7.99 Total: 15.47 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.26 Total: -0.77 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.07 Total: -65.24 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.32 Total: -17.32 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.30 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.89 -8.78 -43.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484867471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.637 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds