Wall clock time and date at job start Tue Mar 31 2020 19:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46500 * 109.47623 * 2 1 4 4 C 1.36441 * 124.85211 * 265.00525 * 3 2 1 5 5 C 1.34489 * 108.85595 * 179.97438 * 4 3 2 6 6 C 1.46690 * 106.33118 * 359.97438 * 5 4 3 7 7 C 1.47268 * 126.94040 * 180.02562 * 6 5 4 8 8 O 1.21624 * 119.99822 * 179.97438 * 7 6 5 9 9 N 1.34782 * 119.99857 * 359.97438 * 7 6 5 10 10 C 1.46496 * 119.99402 * 174.69424 * 9 7 6 11 11 C 1.52998 * 109.54561 * 304.10046 * 10 9 7 12 12 N 1.46506 * 109.47144 * 305.58829 * 11 10 9 13 13 C 1.36937 * 119.99963 * 175.02658 * 12 11 10 14 14 H 1.08003 * 120.00120 * 359.97438 * 13 12 11 15 15 C 1.38810 * 119.99695 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00354 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99703 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47407 * 89.99814 * 17 15 13 19 19 H 1.48499 * 109.47054 * 209.99988 * 17 15 13 20 20 H 1.48500 * 109.47134 * 329.99803 * 17 15 13 21 21 C 1.53181 * 109.54034 * 183.92722 * 10 9 7 22 22 C 1.53282 * 109.06219 * 297.02911 * 21 10 9 23 23 O 1.42907 * 109.46316 * 302.44589 * 22 21 10 24 24 C 1.42907 * 114.09704 * 61.15508 * 23 22 21 25 25 C 1.53090 * 109.41507 * 298.84731 * 24 23 22 26 26 C 1.34661 * 124.84829 * 84.99816 * 3 2 1 27 27 C 1.50701 * 125.80059 * 0.02562 * 26 3 2 28 28 H 1.08998 * 109.46902 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47222 * 299.99772 * 1 2 3 30 30 H 1.08999 * 109.46874 * 59.99603 * 1 2 3 31 31 H 1.09001 * 109.47222 * 240.00228 * 2 1 3 32 32 H 1.08995 * 109.47354 * 120.00417 * 2 1 3 33 33 H 1.07995 * 125.57471 * 359.97438 * 4 3 2 34 34 H 1.08003 * 126.83612 * 180.26453 * 5 4 3 35 35 H 0.96994 * 120.00209 * 354.69266 * 9 7 6 36 36 H 1.08997 * 109.47139 * 65.58449 * 11 10 9 37 37 H 1.09000 * 109.47210 * 185.59141 * 11 10 9 38 38 H 0.96995 * 119.99780 * 355.02248 * 12 11 10 39 39 H 0.96998 * 119.99726 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.52720 * 57.01461 * 21 10 9 41 41 H 1.09005 * 109.52633 * 177.21083 * 21 10 9 42 42 H 1.09003 * 109.46354 * 182.45036 * 22 21 10 43 43 H 1.09004 * 109.46879 * 62.44717 * 22 21 10 44 44 H 1.08998 * 109.48099 * 178.86117 * 24 23 22 45 45 H 1.09001 * 109.48583 * 58.83332 * 24 23 22 46 46 H 1.09001 * 109.52147 * 297.69952 * 25 24 23 47 47 H 1.09002 * 109.57621 * 177.54333 * 25 24 23 48 48 H 1.08994 * 109.47200 * 270.00282 * 27 26 3 49 49 H 1.08999 * 109.47044 * 30.00533 * 27 26 3 50 50 H 1.09001 * 109.46891 * 150.00119 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3703 2.0838 -1.1154 5 6 2.7704 3.3135 -0.7463 6 6 2.6519 3.3645 0.7150 7 6 2.9726 4.5051 1.5897 8 8 2.8257 4.4086 2.7931 9 7 3.4290 5.6558 1.0565 10 6 3.6376 6.8270 1.9114 11 6 2.3381 7.1624 2.6459 12 7 1.2545 7.3224 1.6730 13 6 -0.0290 7.5261 2.1049 14 1 -0.2425 7.5684 3.1628 15 6 -1.0557 7.6771 1.1830 16 7 -0.7956 7.6251 -0.1061 17 14 -2.8066 7.9543 1.7722 18 1 -3.0558 9.4111 1.9158 19 1 -3.7574 7.3845 0.7840 20 1 -2.9984 7.2875 3.0851 21 6 4.0623 8.0206 1.0504 22 6 5.4045 7.7031 0.3817 23 8 6.3772 7.4034 1.3848 24 6 6.0541 6.2678 2.1899 25 6 4.7401 6.5270 2.9316 26 6 2.1841 2.1387 1.1009 27 6 1.9013 1.7091 2.5174 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.3335 1.7130 -2.1291 34 1 3.1070 4.1074 -1.3966 35 1 3.6194 5.7083 0.1069 36 1 2.0913 6.3548 3.3350 37 1 2.4652 8.0901 3.2039 38 1 1.4462 7.2841 0.7230 39 1 -1.5131 7.7310 -0.7502 40 1 3.3072 8.2058 0.2865 41 1 4.1694 8.9041 1.6799 42 1 5.7343 8.5652 -0.1982 43 1 5.2870 6.8441 -0.2789 44 1 6.8516 6.0958 2.9127 45 1 5.9450 5.3898 1.5532 46 1 4.8608 7.3803 3.5990 47 1 4.4686 5.6456 3.5126 48 1 0.8678 1.9464 2.7696 49 1 2.0603 0.6347 2.6099 50 1 2.5713 2.2354 3.1973 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484867471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:05 Heat of formation + Delta-G solvation = -46.009720 kcal Electronic energy + Delta-G solvation = -31051.029908 eV Core-core repulsion = 27078.414137 eV Total energy + Delta-G solvation = -3972.615771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32574 -41.39749 -39.18953 -37.12607 -35.40625 -34.95711 -33.12018 -32.48499 -32.25022 -31.97763 -30.06930 -28.17670 -27.25362 -25.46617 -24.87496 -24.48856 -23.25556 -22.88948 -21.40650 -20.12593 -19.79620 -19.21637 -18.39918 -17.32531 -16.98401 -16.83317 -16.73439 -16.26752 -16.20067 -15.80508 -15.58708 -15.38578 -15.12187 -14.86318 -14.77092 -14.26934 -14.13327 -14.03700 -13.85149 -13.70556 -13.65511 -13.44119 -13.20549 -13.01378 -12.98213 -12.80073 -12.77223 -12.70764 -12.37597 -12.28872 -12.12498 -12.11328 -11.95234 -11.60644 -11.32990 -10.99235 -10.61307 -10.36477 -9.82549 -9.43423 -9.01944 -8.92330 -7.93757 -5.19372 0.87844 1.41985 1.43814 1.52094 1.57860 1.92978 2.47892 2.55542 2.80070 2.97603 3.38843 3.62338 3.81057 3.83687 3.86126 3.91959 4.03120 4.06563 4.12327 4.22350 4.27595 4.30727 4.38402 4.43023 4.49259 4.60121 4.68873 4.71197 4.77041 4.81381 4.82691 4.85792 4.88974 4.90198 5.00869 5.09646 5.10287 5.14850 5.18259 5.21719 5.28130 5.33327 5.46791 5.78879 5.88329 6.18269 6.25597 6.28358 6.45262 6.84510 7.35619 7.57202 8.10791 8.39514 9.29115 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006964 B = 0.005756 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4019.890178 B = 4862.919148 C = 7708.079009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 N -0.438 5.438 4 C -0.009 4.009 5 C -0.187 4.187 6 C -0.267 4.267 7 C 0.595 3.405 8 O -0.578 6.578 9 N -0.702 5.702 10 C 0.182 3.818 11 C 0.145 3.855 12 N -0.726 5.726 13 C -0.241 4.241 14 H 0.061 0.939 15 C -0.069 4.069 16 N -0.961 5.961 17 Si 0.966 3.034 18 H -0.284 1.284 19 H -0.292 1.292 20 H -0.279 1.279 21 C -0.148 4.148 22 C 0.066 3.934 23 O -0.391 6.391 24 C 0.073 3.927 25 C -0.155 4.155 26 C 0.090 3.910 27 C -0.084 4.084 28 H 0.101 0.899 29 H 0.042 0.958 30 H 0.052 0.948 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.200 0.800 34 H 0.150 0.850 35 H 0.401 0.599 36 H 0.024 0.976 37 H 0.015 0.985 38 H 0.377 0.623 39 H 0.250 0.750 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.116 0.884 43 H 0.058 0.942 44 H 0.110 0.890 45 H 0.048 0.952 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.061 0.939 49 H 0.092 0.908 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.502 -15.425 -3.299 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.114 5.114 4 C -0.136 4.136 5 C -0.210 4.210 6 C -0.277 4.277 7 C 0.386 3.614 8 O -0.460 6.460 9 N -0.353 5.353 10 C 0.095 3.905 11 C 0.017 3.983 12 N -0.369 5.369 13 C -0.373 4.373 14 H 0.079 0.921 15 C -0.261 4.261 16 N -0.612 5.612 17 Si 0.796 3.204 18 H -0.211 1.211 19 H -0.219 1.219 20 H -0.205 1.205 21 C -0.186 4.186 22 C -0.010 4.010 23 O -0.310 6.310 24 C -0.003 4.003 25 C -0.194 4.194 26 C -0.028 4.028 27 C -0.141 4.141 28 H 0.120 0.880 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.122 0.878 33 H 0.217 0.783 34 H 0.167 0.833 35 H 0.236 0.764 36 H 0.041 0.959 37 H 0.033 0.967 38 H 0.210 0.790 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.134 0.866 43 H 0.077 0.923 44 H 0.128 0.872 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.309 -15.696 -2.335 20.083 hybrid contribution -1.680 0.502 -0.444 1.809 sum 10.629 -15.193 -2.779 18.749 Atomic orbital electron populations 1.22166 0.94471 1.04100 1.01963 1.22207 0.95437 0.78684 1.06494 1.43962 1.49466 1.13027 1.04959 1.22144 1.06266 0.92725 0.92437 1.22189 1.08022 0.98354 0.92482 1.20358 1.17499 0.95132 0.94694 1.17536 0.74888 0.82235 0.86786 1.90602 1.55539 1.83593 1.16298 1.45578 1.67649 1.10403 1.11673 1.20392 0.93704 0.85285 0.91097 1.21097 0.87854 0.96828 0.92490 1.42230 1.03017 1.86863 1.04743 1.19497 0.86196 1.39630 0.91944 0.92145 1.25392 1.01344 1.03883 0.95498 1.69788 1.32133 1.58909 1.00342 0.85248 0.80555 0.77710 0.76919 1.21052 1.21877 1.20451 1.22392 0.98660 0.97202 1.00346 1.22690 0.86884 1.01780 0.89666 1.87885 1.45838 1.48985 1.48251 1.22501 0.96080 0.87901 0.93837 1.22467 0.95020 1.03526 0.98413 1.20419 1.00936 0.90934 0.90505 1.20432 1.02354 1.02174 0.89116 0.87996 0.93902 0.92882 0.86034 0.87809 0.78305 0.83254 0.76389 0.95850 0.96700 0.79014 0.94126 0.90979 0.89882 0.86608 0.92348 0.87248 0.93365 0.90301 0.90420 0.91991 0.88981 0.90291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 10.24 71.98 0.74 -1.82 16 2 C 0.09 1.26 6.45 86.38 0.56 1.82 16 3 N -0.44 -10.20 2.69 -509.94 -1.37 -11.57 16 4 C -0.01 -0.22 11.33 83.12 0.94 0.72 16 5 C -0.19 -5.45 10.56 23.62 0.25 -5.20 16 6 C -0.27 -9.44 6.29 -19.04 -0.12 -9.56 16 7 C 0.59 23.53 7.22 86.62 0.63 24.16 16 8 O -0.58 -25.69 11.12 -4.11 -0.05 -25.73 16 9 N -0.70 -24.74 3.75 -425.75 -1.60 -26.34 16 10 C 0.18 6.47 0.32 3.72 0.00 6.48 16 11 C 0.14 6.68 4.79 86.38 0.41 7.10 16 12 N -0.73 -39.18 5.21 -343.45 -1.79 -40.97 16 13 C -0.24 -14.44 9.99 84.03 0.84 -13.60 16 14 H 0.06 3.62 7.83 -2.91 -0.02 3.60 16 15 C -0.07 -4.11 5.50 84.86 0.47 -3.65 16 16 N -0.96 -59.76 13.06 21.65 0.28 -59.48 16 17 Si 0.97 48.51 29.55 68.60 2.03 50.54 16 18 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 19 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 20 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 21 C -0.15 -4.62 4.84 30.75 0.15 -4.47 16 22 C 0.07 1.64 6.67 72.08 0.48 2.12 16 23 O -0.39 -10.49 10.77 -148.98 -1.60 -12.10 16 24 C 0.07 1.92 6.68 72.01 0.48 2.40 16 25 C -0.16 -4.88 4.82 30.68 0.15 -4.73 16 26 C 0.09 2.76 6.89 41.78 0.29 3.05 16 27 C -0.08 -2.33 9.52 71.24 0.68 -1.65 16 28 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.12 0.96 8.11 -2.39 -0.02 0.94 16 32 H 0.10 1.12 7.05 -2.39 -0.02 1.10 16 33 H 0.20 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.15 3.88 7.71 -2.91 -0.02 3.86 16 35 H 0.40 12.59 6.55 -92.71 -0.61 11.99 16 36 H 0.02 1.22 6.25 -2.39 -0.01 1.20 16 37 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.38 20.88 6.51 -92.71 -0.60 20.27 16 39 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 40 H 0.07 2.52 7.22 -2.39 -0.02 2.50 16 41 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 42 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.06 1.33 7.01 -2.38 -0.02 1.31 16 44 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.05 1.28 7.75 -2.39 -0.02 1.26 16 46 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 47 H 0.08 2.74 6.25 -2.39 -0.01 2.73 16 48 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.09 1.78 7.02 -2.39 -0.02 1.77 16 50 H 0.08 2.54 6.47 -2.39 -0.02 2.52 16 Total: -1.00 -77.84 390.93 2.59 -75.25 By element: Atomic # 1 Polarization: 47.48 SS G_CDS: -0.25 Total: 47.23 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.94 Total: 3.16 kcal Atomic # 7 Polarization: -133.88 SS G_CDS: -4.47 Total: -138.35 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.65 Total: -37.83 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -77.84 2.59 -75.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484867471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.244 kcal (2) G-P(sol) polarization free energy of solvation -77.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds