Wall clock time and date at job start Tue Mar 31 2020 18:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47404 * 2 1 4 4 O 1.42899 * 109.46783 * 119.99623 * 2 1 3 5 5 C 1.35677 * 117.00269 * 269.99788 * 4 2 1 6 6 C 1.38921 * 119.68330 * 179.73247 * 5 4 2 7 7 C 1.38381 * 119.10420 * 179.75454 * 6 5 4 8 8 C 1.38828 * 118.48927 * 0.50474 * 7 6 5 9 9 C 1.38044 * 119.28955 * 359.73640 * 8 7 6 10 10 N 1.31969 * 120.83474 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.46877 * 239.99539 * 2 1 3 12 12 O 1.21280 * 119.99862 * 255.37290 * 11 2 1 13 13 N 1.34774 * 120.00026 * 75.37320 * 11 2 1 14 14 C 1.46503 * 119.99953 * 5.52882 * 13 11 2 15 15 C 1.46498 * 120.00077 * 185.52502 * 13 11 2 16 16 C 1.53004 * 109.46979 * 90.00330 * 15 13 11 17 17 C 1.53010 * 109.46813 * 300.00081 * 16 15 13 18 18 C 1.53003 * 109.47280 * 59.99934 * 16 15 13 19 19 C 1.53002 * 109.47220 * 180.02562 * 16 15 13 20 20 N 1.46496 * 109.47000 * 180.02562 * 19 16 15 21 21 C 1.36936 * 119.99861 * 179.97438 * 20 19 16 22 22 H 1.07994 * 120.00217 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99693 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00569 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99573 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47353 * 60.00093 * 25 23 21 27 27 H 1.48500 * 109.46892 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47276 * 300.00066 * 25 23 21 29 29 H 1.08999 * 109.47169 * 55.15210 * 1 2 3 30 30 H 1.08995 * 109.47421 * 175.15780 * 1 2 3 31 31 H 1.08998 * 109.47151 * 295.16001 * 1 2 3 32 32 H 1.07993 * 120.44740 * 0.02562 * 6 5 4 33 33 H 1.08004 * 120.75121 * 180.23781 * 7 6 5 34 34 H 1.07999 * 120.35826 * 179.70742 * 8 7 6 35 35 H 1.07998 * 119.58764 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.46601 * 84.33360 * 14 13 11 37 37 H 1.09001 * 109.46985 * 204.32984 * 14 13 11 38 38 H 1.08998 * 109.46921 * 324.33729 * 14 13 11 39 39 H 1.09001 * 109.47448 * 210.00168 * 15 13 11 40 40 H 1.09001 * 109.47232 * 330.00617 * 15 13 11 41 41 H 1.08995 * 109.47305 * 60.00367 * 17 16 15 42 42 H 1.09006 * 109.46592 * 180.02562 * 17 16 15 43 43 H 1.08994 * 109.47015 * 299.99802 * 17 16 15 44 44 H 1.08999 * 109.47066 * 59.99752 * 18 16 15 45 45 H 1.08995 * 109.46816 * 180.02562 * 18 16 15 46 46 H 1.09002 * 109.46902 * 300.00449 * 18 16 15 47 47 H 1.08999 * 109.46489 * 299.99858 * 19 16 15 48 48 H 1.08993 * 109.47064 * 59.99497 * 19 16 15 49 49 H 0.97003 * 120.00155 * 359.97438 * 20 19 16 50 50 H 0.96994 * 120.00134 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2116 0.0830 2.2742 6 6 2.6688 -0.5157 3.4414 7 6 2.8790 0.2681 4.5623 8 6 2.6131 1.6281 4.4786 9 6 2.1557 2.1548 3.2874 10 7 1.9694 1.3825 2.2336 11 6 2.0323 -0.7105 -1.2304 12 8 2.4845 -1.8323 -1.1407 13 7 1.9790 -0.0994 -2.4304 14 6 1.5467 1.2974 -2.5226 15 6 2.3534 -0.8317 -3.6427 16 6 1.1173 -1.5202 -4.2249 17 6 0.5450 -2.4967 -3.1953 18 6 0.0623 -0.4672 -4.5705 19 6 1.5084 -2.2856 -5.4907 20 7 0.3246 -2.9442 -6.0484 21 6 0.4316 -3.6923 -7.1903 22 1 1.3885 -3.7965 -7.6800 23 6 -0.6900 -4.3169 -7.7185 24 7 -1.8563 -4.1896 -7.1221 25 14 -0.5441 -5.3369 -9.2767 26 1 0.4136 -6.4493 -9.0523 27 1 -1.8749 -5.8926 -9.6308 28 1 -0.0554 -4.4790 -10.3860 29 1 -0.3633 0.5872 -0.8434 30 1 -0.3634 -1.0239 -0.0867 31 1 -0.3633 0.4369 0.9301 32 1 2.8617 -1.5779 3.4723 33 1 3.2377 -0.1690 5.4825 34 1 2.7620 2.2672 5.3364 35 1 1.9469 3.2121 3.2170 36 1 2.3957 1.9538 -2.3313 37 1 1.1552 1.4914 -3.5212 38 1 0.7679 1.4861 -1.7838 39 1 2.7611 -0.1361 -4.3762 40 1 3.1049 -1.5819 -3.3965 41 1 0.2664 -1.9518 -2.2934 42 1 -0.3354 -2.9875 -3.6103 43 1 1.2965 -3.2468 -2.9491 44 1 0.4700 0.2285 -5.3039 45 1 -0.8184 -0.9578 -4.9848 46 1 -0.2162 0.0777 -3.6685 47 1 1.9163 -1.5901 -6.2242 48 1 2.2597 -3.0356 -5.2441 49 1 -0.5350 -2.8504 -5.6088 50 1 -2.6399 -4.6263 -7.4910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485263350.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:32 Heat of formation + Delta-G solvation = -14.916803 kcal Electronic energy + Delta-G solvation = -29690.385872 eV Core-core repulsion = 25719.118391 eV Total energy + Delta-G solvation = -3971.267481 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.14543 -40.21211 -38.29116 -37.06454 -35.17406 -33.25676 -32.84880 -32.16371 -30.40370 -30.07625 -27.87708 -26.76050 -26.09128 -25.52635 -24.63907 -23.84860 -23.06943 -22.16569 -19.64911 -18.81823 -18.34040 -17.41019 -17.18065 -16.81450 -16.21465 -16.11998 -15.79761 -15.61959 -14.86657 -14.61722 -14.17066 -14.11873 -13.93576 -13.72972 -13.51383 -13.37339 -13.22505 -13.01676 -12.79281 -12.55977 -12.39869 -12.30719 -12.25416 -12.07884 -11.85019 -11.39785 -11.22394 -11.08774 -10.93635 -10.76617 -10.67569 -10.32225 -10.24707 -10.22336 -10.00549 -9.92517 -9.65313 -9.55446 -8.83947 -8.80800 -8.56214 -6.84017 -5.70741 -2.98078 0.79346 0.90006 2.32085 2.54642 3.24841 3.42866 3.47955 3.52092 3.53254 3.91046 4.26752 4.48259 4.64130 4.65032 4.71207 4.74428 4.84321 4.87662 4.93857 5.12270 5.17767 5.31215 5.34674 5.36531 5.43720 5.45737 5.54259 5.59361 5.61640 5.74804 5.82521 5.88789 5.95700 5.99785 6.05024 6.14331 6.17900 6.32700 6.44393 6.54737 6.63683 6.77740 6.81130 6.91569 6.98223 7.01207 7.30848 7.47901 7.75270 8.13921 8.48868 9.59832 10.19200 10.54057 11.52360 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030087 B = 0.002151 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.411218 B =13011.153630 C =13239.888401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.075 3.925 3 H 0.110 0.890 4 O -0.276 6.276 5 C 0.325 3.675 6 C -0.189 4.189 7 C -0.040 4.040 8 C -0.216 4.216 9 C 0.140 3.860 10 N -0.543 5.543 11 C 0.516 3.484 12 O -0.511 6.511 13 N -0.604 5.604 14 C 0.064 3.936 15 C 0.128 3.872 16 C -0.086 4.086 17 C -0.125 4.125 18 C -0.136 4.136 19 C 0.165 3.835 20 N -0.727 5.727 21 C -0.236 4.236 22 H 0.069 0.931 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.907 3.093 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.136 0.864 35 H 0.159 0.841 36 H 0.056 0.944 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.037 0.963 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.018 0.982 48 H 0.020 0.980 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.022 17.791 23.539 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 H 0.127 0.873 4 O -0.181 6.181 5 C 0.146 3.854 6 C -0.209 4.209 7 C -0.066 4.066 8 C -0.237 4.237 9 C -0.016 4.016 10 N -0.267 5.267 11 C 0.302 3.698 12 O -0.386 6.386 13 N -0.339 5.339 14 C -0.079 4.079 15 C 0.005 3.995 16 C -0.087 4.087 17 C -0.183 4.183 18 C -0.193 4.193 19 C 0.037 3.963 20 N -0.373 5.373 21 C -0.367 4.367 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.161 0.839 33 H 0.159 0.841 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.035 0.965 48 H 0.037 0.963 49 H 0.220 0.780 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.062 17.156 22.599 29.496 hybrid contribution -0.092 -0.625 -0.080 0.637 sum 7.971 16.531 22.519 29.050 Atomic orbital electron populations 1.22206 0.92217 1.04130 1.03692 1.22128 0.95971 0.97745 0.82716 0.87273 1.86407 1.79633 1.34425 1.17665 1.19936 0.90949 0.87374 0.87139 1.21131 1.06079 1.02347 0.91369 1.21435 0.94018 0.93436 0.97673 1.21982 1.05442 0.96244 0.99984 1.22423 0.92625 0.99187 0.87359 1.67273 1.21940 1.04781 1.32729 1.20069 0.79100 0.86634 0.83985 1.90750 1.43887 1.18504 1.85409 1.47630 1.67104 1.12790 1.06370 1.22125 0.99997 0.81486 1.04268 1.21608 0.97295 0.96124 0.84437 1.21116 0.95032 0.95981 0.96605 1.21734 1.01554 0.98354 0.96642 1.21880 0.99606 0.98032 0.99785 1.20579 0.91085 0.93739 0.90900 1.42375 1.06117 1.59200 1.29563 1.19197 0.94388 1.22297 1.00845 0.91329 1.24719 0.95581 1.01399 0.99430 1.69642 0.98882 1.48565 1.41309 0.86267 0.76448 0.80205 0.83265 1.21339 1.21771 1.21379 0.89951 0.90885 0.90881 0.83873 0.84115 0.84566 0.82350 0.92547 0.89627 0.91008 0.90339 0.89612 0.94425 0.91956 0.92578 0.93181 0.91415 0.93645 0.96453 0.96257 0.78006 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.29 37.16 0.35 -1.38 16 2 C 0.07 0.89 2.07 -27.88 -0.06 0.83 16 3 H 0.11 1.15 6.18 -51.93 -0.32 0.83 16 4 O -0.28 -3.75 9.34 -38.16 -0.36 -4.11 16 5 C 0.32 3.70 7.45 -17.12 -0.13 3.57 16 6 C -0.19 -1.74 10.04 -39.28 -0.39 -2.13 16 7 C -0.04 -0.26 10.17 -39.31 -0.40 -0.66 16 8 C -0.22 -1.28 10.11 -39.43 -0.40 -1.68 16 9 C 0.14 1.00 11.18 -17.56 -0.20 0.80 16 10 N -0.54 -5.46 8.65 -13.33 -0.12 -5.57 16 11 C 0.52 7.45 5.19 -10.99 -0.06 7.40 16 12 O -0.51 -9.46 14.79 -13.87 -0.21 -9.66 16 13 N -0.60 -7.49 2.40 -181.57 -0.44 -7.92 16 14 C 0.06 0.55 8.58 59.85 0.51 1.06 16 15 C 0.13 1.80 4.59 -4.04 -0.02 1.78 16 16 C -0.09 -1.44 0.60 -154.50 -0.09 -1.53 16 17 C -0.13 -2.32 7.06 37.16 0.26 -2.06 16 18 C -0.14 -2.11 7.07 37.16 0.26 -1.84 16 19 C 0.17 3.42 5.15 -4.04 -0.02 3.40 16 20 N -0.73 -18.68 5.00 -59.91 -0.30 -18.98 16 21 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.68 13.06 55.49 0.72 -27.96 16 25 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 29 H 0.08 0.72 6.09 -51.93 -0.32 0.41 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.14 0.53 8.06 -52.48 -0.42 0.10 16 34 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 35 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.09 0.70 6.31 -51.93 -0.33 0.37 16 38 H 0.07 0.53 4.75 -51.93 -0.25 0.28 16 39 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 40 H 0.09 1.35 7.35 -51.93 -0.38 0.97 16 41 H 0.04 0.64 6.22 -51.93 -0.32 0.32 16 42 H 0.06 1.29 6.86 -51.93 -0.36 0.93 16 43 H 0.06 1.12 7.86 -51.93 -0.41 0.71 16 44 H 0.05 0.72 8.07 -51.93 -0.42 0.30 16 45 H 0.07 1.26 6.86 -51.93 -0.36 0.91 16 46 H 0.04 0.59 6.08 -51.93 -0.32 0.27 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.38 10.33 5.36 -40.82 -0.22 10.11 16 50 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -35.12 393.27 -8.17 -43.29 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.76 Total: 7.01 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -0.63 Total: 0.12 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.13 Total: -60.43 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.56 Total: -13.77 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.12 -8.17 -43.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485263350.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.373 kcal (2) G-P(sol) polarization free energy of solvation -35.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds