Wall clock time and date at job start Tue Mar 31 2020 18:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47404 * 2 1 4 4 O 1.42899 * 109.46783 * 119.99623 * 2 1 3 5 5 C 1.35677 * 117.00269 * 269.99788 * 4 2 1 6 6 C 1.38921 * 119.68330 * 179.73247 * 5 4 2 7 7 C 1.38381 * 119.10420 * 179.75454 * 6 5 4 8 8 C 1.38828 * 118.48927 * 0.50474 * 7 6 5 9 9 C 1.38044 * 119.28955 * 359.73640 * 8 7 6 10 10 N 1.31969 * 120.83474 * 0.02562 * 9 8 7 11 11 C 1.50700 * 109.46877 * 239.99539 * 2 1 3 12 12 O 1.21280 * 119.99862 * 255.37290 * 11 2 1 13 13 N 1.34774 * 120.00026 * 75.37320 * 11 2 1 14 14 C 1.46503 * 119.99953 * 5.52882 * 13 11 2 15 15 C 1.46498 * 120.00077 * 185.52502 * 13 11 2 16 16 C 1.53004 * 109.46979 * 90.00330 * 15 13 11 17 17 C 1.53010 * 109.46813 * 300.00081 * 16 15 13 18 18 C 1.53003 * 109.47280 * 59.99934 * 16 15 13 19 19 C 1.53002 * 109.47220 * 180.02562 * 16 15 13 20 20 N 1.46496 * 109.47000 * 180.02562 * 19 16 15 21 21 C 1.36936 * 119.99861 * 179.97438 * 20 19 16 22 22 H 1.07994 * 120.00217 * 359.97438 * 21 20 19 23 23 C 1.38818 * 119.99693 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00569 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99573 * 179.97438 * 23 21 20 26 26 H 1.48492 * 109.47353 * 60.00093 * 25 23 21 27 27 H 1.48500 * 109.46892 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47276 * 300.00066 * 25 23 21 29 29 H 1.08999 * 109.47169 * 55.15210 * 1 2 3 30 30 H 1.08995 * 109.47421 * 175.15780 * 1 2 3 31 31 H 1.08998 * 109.47151 * 295.16001 * 1 2 3 32 32 H 1.07993 * 120.44740 * 0.02562 * 6 5 4 33 33 H 1.08004 * 120.75121 * 180.23781 * 7 6 5 34 34 H 1.07999 * 120.35826 * 179.70742 * 8 7 6 35 35 H 1.07998 * 119.58764 * 179.97438 * 9 8 7 36 36 H 1.09000 * 109.46601 * 84.33360 * 14 13 11 37 37 H 1.09001 * 109.46985 * 204.32984 * 14 13 11 38 38 H 1.08998 * 109.46921 * 324.33729 * 14 13 11 39 39 H 1.09001 * 109.47448 * 210.00168 * 15 13 11 40 40 H 1.09001 * 109.47232 * 330.00617 * 15 13 11 41 41 H 1.08995 * 109.47305 * 60.00367 * 17 16 15 42 42 H 1.09006 * 109.46592 * 180.02562 * 17 16 15 43 43 H 1.08994 * 109.47015 * 299.99802 * 17 16 15 44 44 H 1.08999 * 109.47066 * 59.99752 * 18 16 15 45 45 H 1.08995 * 109.46816 * 180.02562 * 18 16 15 46 46 H 1.09002 * 109.46902 * 300.00449 * 18 16 15 47 47 H 1.08999 * 109.46489 * 299.99858 * 19 16 15 48 48 H 1.08993 * 109.47064 * 59.99497 * 19 16 15 49 49 H 0.97003 * 120.00155 * 359.97438 * 20 19 16 50 50 H 0.96994 * 120.00134 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2116 0.0830 2.2742 6 6 2.6688 -0.5157 3.4414 7 6 2.8790 0.2681 4.5623 8 6 2.6131 1.6281 4.4786 9 6 2.1557 2.1548 3.2874 10 7 1.9694 1.3825 2.2336 11 6 2.0323 -0.7105 -1.2304 12 8 2.4845 -1.8323 -1.1407 13 7 1.9790 -0.0994 -2.4304 14 6 1.5467 1.2974 -2.5226 15 6 2.3534 -0.8317 -3.6427 16 6 1.1173 -1.5202 -4.2249 17 6 0.5450 -2.4967 -3.1953 18 6 0.0623 -0.4672 -4.5705 19 6 1.5084 -2.2856 -5.4907 20 7 0.3246 -2.9442 -6.0484 21 6 0.4316 -3.6923 -7.1903 22 1 1.3885 -3.7965 -7.6800 23 6 -0.6900 -4.3169 -7.7185 24 7 -1.8563 -4.1896 -7.1221 25 14 -0.5441 -5.3369 -9.2767 26 1 0.4136 -6.4493 -9.0523 27 1 -1.8749 -5.8926 -9.6308 28 1 -0.0554 -4.4790 -10.3860 29 1 -0.3633 0.5872 -0.8434 30 1 -0.3634 -1.0239 -0.0867 31 1 -0.3633 0.4369 0.9301 32 1 2.8617 -1.5779 3.4723 33 1 3.2377 -0.1690 5.4825 34 1 2.7620 2.2672 5.3364 35 1 1.9469 3.2121 3.2170 36 1 2.3957 1.9538 -2.3313 37 1 1.1552 1.4914 -3.5212 38 1 0.7679 1.4861 -1.7838 39 1 2.7611 -0.1361 -4.3762 40 1 3.1049 -1.5819 -3.3965 41 1 0.2664 -1.9518 -2.2934 42 1 -0.3354 -2.9875 -3.6103 43 1 1.2965 -3.2468 -2.9491 44 1 0.4700 0.2285 -5.3039 45 1 -0.8184 -0.9578 -4.9848 46 1 -0.2162 0.0777 -3.6685 47 1 1.9163 -1.5901 -6.2242 48 1 2.2597 -3.0356 -5.2441 49 1 -0.5350 -2.8504 -5.6088 50 1 -2.6399 -4.6263 -7.4910 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485263350.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:31 Heat of formation + Delta-G solvation = -38.163720 kcal Electronic energy + Delta-G solvation = -29691.393934 eV Core-core repulsion = 25719.118391 eV Total energy + Delta-G solvation = -3972.275543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97677 -41.14596 -39.25650 -38.34454 -36.51475 -35.00849 -33.47529 -33.14201 -32.09782 -30.97923 -28.89400 -28.16581 -27.32969 -27.12245 -25.58256 -24.65672 -24.31020 -23.36122 -20.70867 -19.87680 -19.57348 -19.11897 -18.29062 -17.64833 -17.13438 -16.91817 -16.77200 -16.62688 -16.45403 -15.58123 -15.48955 -15.44427 -15.31630 -14.78345 -14.67076 -14.35726 -14.25478 -14.06807 -13.99535 -13.87186 -13.68286 -13.42642 -13.19843 -12.96045 -12.83282 -12.78198 -12.69231 -12.55471 -12.50454 -12.24830 -12.19221 -12.12052 -11.67408 -11.63727 -11.51177 -10.92594 -10.90550 -10.75527 -10.57030 -9.65307 -9.49082 -8.96923 -7.93928 -5.21670 0.21190 0.32944 1.43101 1.45450 1.47553 1.49591 1.55541 2.37486 2.56970 2.83499 3.28155 3.35429 3.39012 3.80033 3.86284 3.88926 3.93752 3.95707 4.05963 4.12587 4.21984 4.23978 4.28746 4.38003 4.45904 4.51886 4.58624 4.61957 4.64275 4.79824 4.80601 4.82161 4.86796 4.89447 4.94108 5.07849 5.10057 5.13623 5.16616 5.19928 5.30507 5.42071 5.47064 5.49051 5.55317 5.56848 6.15821 6.28330 6.33424 6.85603 7.07234 7.34872 8.12045 8.36122 9.29597 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.030087 B = 0.002151 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.411218 B =13011.153630 C =13239.888401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.082 3.918 3 H 0.126 0.874 4 O -0.307 6.307 5 C 0.292 3.708 6 C -0.209 4.209 7 C -0.037 4.037 8 C -0.204 4.204 9 C 0.129 3.871 10 N -0.557 5.557 11 C 0.509 3.491 12 O -0.564 6.564 13 N -0.598 5.598 14 C 0.055 3.945 15 C 0.135 3.865 16 C -0.076 4.076 17 C -0.112 4.112 18 C -0.127 4.127 19 C 0.163 3.837 20 N -0.738 5.738 21 C -0.244 4.244 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.970 5.970 25 Si 0.974 3.026 26 H -0.282 1.282 27 H -0.295 1.295 28 H -0.275 1.275 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.138 0.862 33 H 0.171 0.829 34 H 0.172 0.828 35 H 0.190 0.810 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.031 0.969 44 H 0.068 0.932 45 H 0.032 0.968 46 H 0.074 0.926 47 H 0.032 0.968 48 H 0.007 0.993 49 H 0.376 0.624 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.845 20.973 24.583 33.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.144 0.856 4 O -0.214 6.214 5 C 0.115 3.885 6 C -0.229 4.229 7 C -0.063 4.063 8 C -0.224 4.224 9 C -0.026 4.026 10 N -0.281 5.281 11 C 0.296 3.704 12 O -0.442 6.442 13 N -0.331 5.331 14 C -0.086 4.086 15 C 0.012 3.988 16 C -0.077 4.077 17 C -0.169 4.169 18 C -0.184 4.184 19 C 0.036 3.964 20 N -0.382 5.382 21 C -0.376 4.376 22 H 0.092 0.908 23 C -0.269 4.269 24 N -0.621 5.621 25 Si 0.803 3.197 26 H -0.208 1.208 27 H -0.221 1.221 28 H -0.201 1.201 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.156 0.844 33 H 0.188 0.812 34 H 0.189 0.811 35 H 0.207 0.793 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.128 0.872 40 H 0.083 0.917 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.051 0.949 46 H 0.093 0.907 47 H 0.050 0.950 48 H 0.025 0.975 49 H 0.210 0.790 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 8.915 20.399 23.648 32.478 hybrid contribution -0.272 -1.527 -0.253 1.571 sum 8.643 18.872 23.395 31.276 Atomic orbital electron populations 1.22177 0.91244 1.03147 1.04991 1.22104 0.96486 0.97752 0.81444 0.85620 1.86361 1.80484 1.35955 1.18643 1.20169 0.93117 0.88197 0.87036 1.21339 1.06936 1.02711 0.91958 1.21845 0.92930 0.93778 0.97702 1.22419 1.03171 0.96227 1.00582 1.23070 0.92059 1.00343 0.87155 1.67233 1.22409 1.04292 1.34151 1.20666 0.78301 0.86154 0.85231 1.90724 1.46285 1.20868 1.86285 1.47693 1.66226 1.14117 1.05104 1.22447 1.01539 0.79102 1.05556 1.21421 0.95174 0.96517 0.85712 1.21003 0.96773 0.95709 0.94230 1.21578 0.99506 0.98268 0.97584 1.21805 0.97574 0.97612 1.01438 1.20732 0.89185 0.93724 0.92805 1.42559 1.07197 1.59370 1.29073 1.19614 0.94542 1.22004 1.01460 0.90818 1.25561 0.95374 1.03149 1.02848 1.69810 0.99448 1.49863 1.42944 0.85199 0.76136 0.78657 0.79685 1.20788 1.22136 1.20124 0.87911 0.93109 0.90072 0.84363 0.81174 0.81092 0.79320 0.90289 0.88442 0.89466 0.87205 0.91725 0.93151 0.94898 0.94979 0.91331 0.94878 0.90739 0.95014 0.97498 0.79035 0.94064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.19 9.29 71.98 0.67 -2.53 16 2 C 0.08 1.94 2.07 29.85 0.06 2.00 16 3 H 0.13 2.47 6.18 -2.39 -0.01 2.46 16 4 O -0.31 -8.70 9.34 -71.37 -0.67 -9.36 16 5 C 0.29 6.68 7.45 84.79 0.63 7.32 16 6 C -0.21 -3.85 10.04 22.47 0.23 -3.62 16 7 C -0.04 -0.41 10.17 22.45 0.23 -0.18 16 8 C -0.20 -1.74 10.11 22.37 0.23 -1.52 16 9 C 0.13 1.49 11.18 84.63 0.95 2.43 16 10 N -0.56 -10.40 8.65 -308.95 -2.67 -13.08 16 11 C 0.51 14.78 5.19 87.66 0.45 15.23 16 12 O -0.56 -21.93 14.79 15.54 0.23 -21.70 16 13 N -0.60 -13.95 2.40 -846.75 -2.03 -15.98 16 14 C 0.05 0.75 8.58 127.77 1.10 1.84 16 15 C 0.13 3.67 4.59 86.38 0.40 4.06 16 16 C -0.08 -2.54 0.60 -52.18 -0.03 -2.57 16 17 C -0.11 -4.34 7.06 71.99 0.51 -3.83 16 18 C -0.13 -3.78 7.07 71.98 0.51 -3.27 16 19 C 0.16 6.80 5.15 86.38 0.44 7.24 16 20 N -0.74 -38.84 5.00 -343.47 -1.72 -40.56 16 21 C -0.24 -14.11 9.99 84.03 0.84 -13.27 16 22 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 23 C -0.08 -4.57 5.50 84.86 0.47 -4.10 16 24 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 25 Si 0.97 47.49 29.55 68.60 2.03 49.51 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 29 H 0.10 1.57 6.09 -2.39 -0.01 1.56 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 34 H 0.17 0.26 8.06 -2.91 -0.02 0.23 16 35 H 0.19 0.86 8.06 -2.91 -0.02 0.84 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.10 1.16 6.31 -2.39 -0.02 1.15 16 38 H 0.09 0.96 4.75 -2.39 -0.01 0.94 16 39 H 0.11 2.33 8.07 -2.39 -0.02 2.31 16 40 H 0.06 2.07 7.35 -2.39 -0.02 2.05 16 41 H 0.05 1.78 6.22 -2.39 -0.01 1.77 16 42 H 0.03 1.43 6.86 -2.38 -0.02 1.42 16 43 H 0.03 1.36 7.86 -2.39 -0.02 1.34 16 44 H 0.07 1.79 8.07 -2.39 -0.02 1.77 16 45 H 0.03 1.22 6.86 -2.39 -0.02 1.21 16 46 H 0.07 1.76 6.08 -2.39 -0.01 1.74 16 47 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.38 20.97 5.36 -92.71 -0.50 20.48 16 50 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -80.51 393.27 3.57 -76.94 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.45 Total: 29.60 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 7.67 Total: 5.24 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -6.14 Total: -130.23 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.44 Total: -31.06 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Total: -80.51 3.57 -76.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485263350.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.772 kcal (2) G-P(sol) polarization free energy of solvation -80.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds