Wall clock time and date at job start Tue Mar 31 2020 18:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47511 * 2 1 4 4 C 1.52995 * 109.47308 * 239.99405 * 2 1 3 5 5 N 1.46506 * 109.47238 * 185.00505 * 4 2 1 6 6 C 1.34776 * 120.00040 * 180.02562 * 5 4 2 7 7 O 1.21649 * 119.99999 * 354.06934 * 6 5 4 8 8 C 1.47083 * 120.00053 * 174.07165 * 6 5 4 9 9 C 1.39331 * 120.58774 * 176.61726 * 8 6 5 10 10 C 1.39468 * 118.95881 * 179.97438 * 9 8 6 11 11 C 1.35758 * 120.13088 * 359.97438 * 10 9 8 12 12 N 1.35426 * 121.23084 * 0.02562 * 11 10 9 13 13 C 1.46504 * 119.47070 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47069 * 359.97438 * 13 12 11 15 15 C 1.53001 * 109.47076 * 119.99694 * 13 12 11 16 16 C 1.53002 * 109.47057 * 239.99495 * 13 12 11 17 17 C 1.34657 * 121.05856 * 359.72429 * 12 11 10 18 18 O 1.21881 * 120.10333 * 180.29252 * 17 12 11 19 19 N 1.46501 * 109.46743 * 119.99552 * 2 1 3 20 20 C 1.46506 * 120.00118 * 60.00119 * 19 2 1 21 21 C 1.36936 * 120.00243 * 240.00199 * 19 2 1 22 22 H 1.08002 * 119.99816 * 322.01293 * 21 19 2 23 23 C 1.38807 * 120.00640 * 142.01450 * 21 19 2 24 24 N 1.31618 * 120.00407 * 162.44467 * 23 21 19 25 25 Si 1.86800 * 119.99711 * 342.44371 * 23 21 19 26 26 H 1.48500 * 109.47358 * 95.51720 * 25 23 21 27 27 H 1.48504 * 109.47220 * 215.51889 * 25 23 21 28 28 H 1.48509 * 109.47060 * 335.51632 * 25 23 21 29 29 H 1.09004 * 109.46336 * 60.00344 * 1 2 3 30 30 H 1.08996 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47290 * 300.00468 * 1 2 3 32 32 H 1.08999 * 109.47490 * 65.00593 * 4 2 1 33 33 H 1.09000 * 109.47417 * 305.00204 * 4 2 1 34 34 H 0.96998 * 119.99710 * 359.97438 * 5 4 2 35 35 H 1.08004 * 120.52247 * 359.97438 * 9 8 6 36 36 H 1.08004 * 119.93499 * 180.02562 * 10 9 8 37 37 H 1.08003 * 119.38409 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.46688 * 60.00421 * 14 13 12 39 39 H 1.08999 * 109.46826 * 180.02562 * 14 13 12 40 40 H 1.08996 * 109.46943 * 300.00255 * 14 13 12 41 41 H 1.08994 * 109.47214 * 60.00236 * 15 13 12 42 42 H 1.09002 * 109.46673 * 179.97438 * 15 13 12 43 43 H 1.08995 * 109.47129 * 299.99796 * 15 13 12 44 44 H 1.09007 * 109.46695 * 59.99978 * 16 13 12 45 45 H 1.08997 * 109.47055 * 179.97438 * 16 13 12 46 46 H 1.08999 * 109.46755 * 300.00418 * 16 13 12 47 47 H 1.08993 * 109.47043 * 84.65654 * 20 19 2 48 48 H 1.09000 * 109.47366 * 204.65792 * 20 19 2 49 49 H 1.09004 * 109.46928 * 324.65579 * 20 19 2 50 50 H 0.97002 * 120.00048 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8266 -1.1903 6 6 4.1732 -1.4286 -2.1909 7 8 3.5642 -1.9791 -3.0886 8 6 5.6440 -1.4200 -2.1973 9 6 6.3526 -2.0979 -3.1870 10 6 7.7467 -2.0668 -3.1608 11 6 8.3948 -1.3837 -2.1829 12 7 7.7126 -0.7225 -1.2178 13 6 8.4512 0.0028 -0.1811 14 6 9.9540 -0.1505 -0.4238 15 6 8.0750 1.4851 -0.2294 16 6 8.0959 -0.5690 1.1928 17 6 6.3662 -0.7161 -1.1992 18 8 5.7697 -0.1108 -0.3254 19 7 2.0183 -0.6905 1.1963 20 6 1.6643 -2.0931 1.4282 21 6 2.8055 -0.0250 2.0977 22 1 3.5469 0.6793 1.7504 23 6 2.6506 -0.2556 3.4577 24 7 3.6010 0.0964 4.2974 25 14 1.0931 -1.0655 4.0962 26 1 1.3199 -2.5254 4.2461 27 1 0.7363 -0.4820 5.4144 28 1 -0.0154 -0.8329 3.1356 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7518 -0.1585 -2.1369 33 1 1.6054 -1.7199 -1.2950 34 1 3.9824 -0.4623 -0.4317 35 1 5.8306 -2.6390 -3.9623 36 1 8.3118 -2.5864 -3.9205 37 1 9.4747 -1.3672 -2.1744 38 1 10.2073 0.2567 -1.4027 39 1 10.5035 0.3887 0.3477 40 1 10.2217 -1.2066 -0.3892 41 1 7.0044 1.5940 -0.0562 42 1 8.6242 2.0246 0.5422 43 1 8.3281 1.8925 -1.2082 44 1 8.3640 -1.6250 1.2272 45 1 8.6458 -0.0297 1.9641 46 1 7.0253 -0.4601 1.3659 47 1 2.3618 -2.7372 0.8927 48 1 1.7161 -2.3093 2.4953 49 1 0.6516 -2.2764 1.0691 50 1 3.4925 -0.0644 5.2478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485360751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:16 Heat of formation + Delta-G solvation = -0.638453 kcal Electronic energy + Delta-G solvation = -31190.690268 eV Core-core repulsion = 27220.041943 eV Total energy + Delta-G solvation = -3970.648325 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.81467 -39.04616 -37.12447 -36.91665 -36.28330 -33.49420 -32.19070 -31.81797 -30.27757 -29.89611 -28.02847 -27.34422 -26.11764 -25.94515 -24.17716 -23.42780 -22.88746 -20.93787 -19.79778 -19.18869 -17.72485 -17.09664 -16.94116 -16.69845 -15.89118 -15.73136 -15.55061 -15.13513 -14.54503 -14.47093 -14.20475 -14.02647 -13.87570 -13.63499 -13.10664 -12.90445 -12.73635 -12.52921 -12.35072 -12.26261 -12.15479 -12.10852 -12.07510 -12.05349 -11.96558 -11.53139 -11.44849 -11.27618 -11.20108 -11.11658 -10.74526 -10.36597 -10.01426 -9.99421 -9.80590 -9.61907 -9.48947 -9.38190 -8.45867 -8.29704 -7.92397 -6.72736 -5.87141 -3.31579 0.47488 1.83985 2.43853 3.08571 3.38054 3.52521 3.58376 3.92066 4.00422 4.27375 4.32498 4.60742 4.60949 4.72230 4.82923 4.90849 5.09136 5.11139 5.18488 5.28336 5.31469 5.40964 5.55410 5.56673 5.63877 5.69188 5.74931 5.86178 5.87286 5.98187 6.05269 6.12272 6.12831 6.19952 6.27202 6.29447 6.38797 6.42622 6.47827 6.54711 6.60707 6.81364 6.85196 6.95244 7.02527 7.28703 8.02174 8.16114 8.46347 8.50390 8.99755 9.09447 9.81082 10.21365 11.28092 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.004558 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.587140 B = 6141.852655 C = 7827.802366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.158 3.842 3 H 0.077 0.923 4 C 0.107 3.893 5 N -0.692 5.692 6 C 0.567 3.433 7 O -0.573 6.573 8 C -0.267 4.267 9 C 0.049 3.951 10 C -0.249 4.249 11 C 0.151 3.849 12 N -0.481 5.481 13 C 0.145 3.855 14 C -0.163 4.163 15 C -0.164 4.164 16 C -0.166 4.166 17 C 0.524 3.476 18 O -0.506 6.506 19 N -0.603 5.603 20 C 0.112 3.888 21 C -0.258 4.258 22 H 0.084 0.916 23 C 0.031 3.969 24 N -0.906 5.906 25 Si 0.888 3.112 26 H -0.291 1.291 27 H -0.307 1.307 28 H -0.269 1.269 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.428 0.572 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.167 0.833 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.013 0.987 48 H 0.044 0.956 49 H 0.029 0.971 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.011 -1.551 -13.560 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 H 0.096 0.904 4 C -0.020 4.020 5 N -0.352 5.352 6 C 0.354 3.646 7 O -0.456 6.456 8 C -0.274 4.274 9 C 0.025 3.975 10 C -0.272 4.272 11 C 0.020 3.980 12 N -0.190 5.190 13 C 0.063 3.937 14 C -0.220 4.220 15 C -0.222 4.222 16 C -0.224 4.224 17 C 0.325 3.675 18 O -0.385 6.385 19 N -0.327 5.327 20 C -0.033 4.033 21 C -0.386 4.386 22 H 0.101 0.899 23 C -0.169 4.169 24 N -0.548 5.548 25 Si 0.720 3.280 26 H -0.220 1.220 27 H -0.235 1.235 28 H -0.194 1.194 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.276 0.724 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.184 0.816 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.117 0.883 47 H 0.031 0.969 48 H 0.062 0.938 49 H 0.047 0.953 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.265 -1.404 -13.272 18.817 hybrid contribution -0.484 -0.571 0.762 1.069 sum 12.781 -1.975 -12.509 17.993 Atomic orbital electron populations 1.22201 0.97617 1.01225 1.00992 1.20722 0.92061 0.96184 0.85970 0.90449 1.21873 0.80639 1.00674 0.98790 1.46485 1.07913 1.57047 1.23746 1.17453 0.85648 0.79005 0.82482 1.90711 1.69448 1.46949 1.38485 1.21156 0.95152 1.10024 1.01087 1.21944 0.93399 0.88531 0.93598 1.20593 0.94408 1.09131 1.03099 1.22289 0.99308 0.89370 0.87007 1.45785 1.08056 1.41543 1.23651 1.21080 0.91128 0.93385 0.88084 1.22308 0.93429 1.03008 1.03289 1.22241 1.05740 0.92227 1.01959 1.22263 1.06429 1.00325 0.93339 1.17069 0.80518 0.83127 0.86819 1.90762 1.65506 1.44848 1.37426 1.44086 1.58970 1.06454 1.23238 1.21271 0.96670 0.86322 0.98997 1.18870 1.11217 1.22836 0.85704 0.89873 1.25474 0.96986 0.98290 0.96106 1.69829 1.31912 1.50313 1.02774 0.86787 0.86306 0.77745 0.77195 1.21964 1.23533 1.19369 0.93370 0.93264 0.92206 0.92623 0.92506 0.72391 0.83713 0.83333 0.81560 0.91491 0.89800 0.91373 0.88898 0.90738 0.92737 0.92654 0.90761 0.88274 0.96916 0.93765 0.95290 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.16 37.16 0.34 -2.58 16 2 C 0.16 3.29 2.88 -67.93 -0.20 3.09 16 3 H 0.08 1.65 7.89 -51.93 -0.41 1.24 16 4 C 0.11 2.11 4.98 -4.04 -0.02 2.09 16 5 N -0.69 -14.54 5.25 -61.49 -0.32 -14.86 16 6 C 0.57 11.39 7.74 -12.67 -0.10 11.30 16 7 O -0.57 -12.35 16.40 5.23 0.09 -12.27 16 8 C -0.27 -4.45 5.92 -104.51 -0.62 -5.06 16 9 C 0.05 0.61 9.70 -38.72 -0.38 0.23 16 10 C -0.25 -2.16 9.99 -40.01 -0.40 -2.56 16 11 C 0.15 1.28 9.58 -16.85 -0.16 1.12 16 12 N -0.48 -5.83 2.53 -105.38 -0.27 -6.09 16 13 C 0.15 1.59 1.02 -131.82 -0.13 1.45 16 14 C -0.16 -1.06 7.09 37.16 0.26 -0.79 16 15 C -0.16 -1.93 8.39 37.16 0.31 -1.61 16 16 C -0.17 -2.23 8.40 37.16 0.31 -1.91 16 17 C 0.52 8.65 6.84 -14.92 -0.10 8.55 16 18 O -0.51 -10.13 9.84 5.03 0.05 -10.08 16 19 N -0.60 -14.68 1.86 -173.49 -0.32 -15.01 16 20 C 0.11 2.62 8.43 59.85 0.50 3.12 16 21 C -0.26 -7.26 9.60 -15.06 -0.14 -7.40 16 22 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 23 C 0.03 0.90 5.35 -17.43 -0.09 0.81 16 24 N -0.91 -27.87 13.97 55.49 0.78 -27.10 16 25 Si 0.89 23.04 24.74 -169.99 -4.21 18.83 16 26 H -0.29 -7.47 6.74 56.52 0.38 -7.08 16 27 H -0.31 -8.09 7.11 56.52 0.40 -7.69 16 28 H -0.27 -6.78 7.06 56.52 0.40 -6.38 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.87 6.69 -51.93 -0.35 0.52 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.15 7.84 -51.93 -0.41 0.75 16 34 H 0.43 9.70 4.58 -40.82 -0.19 9.52 16 35 H 0.15 1.70 7.70 -52.48 -0.40 1.29 16 36 H 0.15 0.77 8.06 -52.48 -0.42 0.34 16 37 H 0.17 0.74 5.55 -52.48 -0.29 0.45 16 38 H 0.07 0.33 7.41 -51.93 -0.38 -0.05 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.37 7.41 -51.93 -0.38 -0.02 16 41 H 0.09 1.45 6.10 -51.93 -0.32 1.13 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.10 1.82 6.14 -51.93 -0.32 1.50 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.04 1.10 3.24 -51.93 -0.17 0.94 16 49 H 0.03 0.61 6.45 -51.93 -0.34 0.27 16 50 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -35.24 385.24 -6.78 -42.02 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -7.76 Total: 8.91 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: -0.61 Total: 9.84 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.14 Total: -63.06 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.14 Total: -22.35 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.21 Total: 18.83 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.24 -6.78 -42.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485360751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.377 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds