Wall clock time and date at job start Tue Mar 31 2020 18:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08991 * 109.47511 * 2 1 4 4 C 1.52995 * 109.47308 * 239.99405 * 2 1 3 5 5 N 1.46506 * 109.47238 * 185.00505 * 4 2 1 6 6 C 1.34776 * 120.00040 * 180.02562 * 5 4 2 7 7 O 1.21649 * 119.99999 * 354.06934 * 6 5 4 8 8 C 1.47083 * 120.00053 * 174.07165 * 6 5 4 9 9 C 1.39331 * 120.58774 * 176.61726 * 8 6 5 10 10 C 1.39468 * 118.95881 * 179.97438 * 9 8 6 11 11 C 1.35758 * 120.13088 * 359.97438 * 10 9 8 12 12 N 1.35426 * 121.23084 * 0.02562 * 11 10 9 13 13 C 1.46504 * 119.47070 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47069 * 359.97438 * 13 12 11 15 15 C 1.53001 * 109.47076 * 119.99694 * 13 12 11 16 16 C 1.53002 * 109.47057 * 239.99495 * 13 12 11 17 17 C 1.34657 * 121.05856 * 359.72429 * 12 11 10 18 18 O 1.21881 * 120.10333 * 180.29252 * 17 12 11 19 19 N 1.46501 * 109.46743 * 119.99552 * 2 1 3 20 20 C 1.46506 * 120.00118 * 60.00119 * 19 2 1 21 21 C 1.36936 * 120.00243 * 240.00199 * 19 2 1 22 22 H 1.08002 * 119.99816 * 322.01293 * 21 19 2 23 23 C 1.38807 * 120.00640 * 142.01450 * 21 19 2 24 24 N 1.31618 * 120.00407 * 162.44467 * 23 21 19 25 25 Si 1.86800 * 119.99711 * 342.44371 * 23 21 19 26 26 H 1.48500 * 109.47358 * 95.51720 * 25 23 21 27 27 H 1.48504 * 109.47220 * 215.51889 * 25 23 21 28 28 H 1.48509 * 109.47060 * 335.51632 * 25 23 21 29 29 H 1.09004 * 109.46336 * 60.00344 * 1 2 3 30 30 H 1.08996 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47290 * 300.00468 * 1 2 3 32 32 H 1.08999 * 109.47490 * 65.00593 * 4 2 1 33 33 H 1.09000 * 109.47417 * 305.00204 * 4 2 1 34 34 H 0.96998 * 119.99710 * 359.97438 * 5 4 2 35 35 H 1.08004 * 120.52247 * 359.97438 * 9 8 6 36 36 H 1.08004 * 119.93499 * 180.02562 * 10 9 8 37 37 H 1.08003 * 119.38409 * 180.02562 * 11 10 9 38 38 H 1.09000 * 109.46688 * 60.00421 * 14 13 12 39 39 H 1.08999 * 109.46826 * 180.02562 * 14 13 12 40 40 H 1.08996 * 109.46943 * 300.00255 * 14 13 12 41 41 H 1.08994 * 109.47214 * 60.00236 * 15 13 12 42 42 H 1.09002 * 109.46673 * 179.97438 * 15 13 12 43 43 H 1.08995 * 109.47129 * 299.99796 * 15 13 12 44 44 H 1.09007 * 109.46695 * 59.99978 * 16 13 12 45 45 H 1.08997 * 109.47055 * 179.97438 * 16 13 12 46 46 H 1.08999 * 109.46755 * 300.00418 * 16 13 12 47 47 H 1.08993 * 109.47043 * 84.65654 * 20 19 2 48 48 H 1.09000 * 109.47366 * 204.65792 * 20 19 2 49 49 H 1.09004 * 109.46928 * 324.65579 * 20 19 2 50 50 H 0.97002 * 120.00048 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8266 -1.1903 6 6 4.1732 -1.4286 -2.1909 7 8 3.5642 -1.9791 -3.0886 8 6 5.6440 -1.4200 -2.1973 9 6 6.3526 -2.0979 -3.1870 10 6 7.7467 -2.0668 -3.1608 11 6 8.3948 -1.3837 -2.1829 12 7 7.7126 -0.7225 -1.2178 13 6 8.4512 0.0028 -0.1811 14 6 9.9540 -0.1505 -0.4238 15 6 8.0750 1.4851 -0.2294 16 6 8.0959 -0.5690 1.1928 17 6 6.3662 -0.7161 -1.1992 18 8 5.7697 -0.1108 -0.3254 19 7 2.0183 -0.6905 1.1963 20 6 1.6643 -2.0931 1.4282 21 6 2.8055 -0.0250 2.0977 22 1 3.5469 0.6793 1.7504 23 6 2.6506 -0.2556 3.4577 24 7 3.6010 0.0964 4.2974 25 14 1.0931 -1.0655 4.0962 26 1 1.3199 -2.5254 4.2461 27 1 0.7363 -0.4820 5.4144 28 1 -0.0154 -0.8329 3.1356 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7518 -0.1585 -2.1369 33 1 1.6054 -1.7199 -1.2950 34 1 3.9824 -0.4623 -0.4317 35 1 5.8306 -2.6390 -3.9623 36 1 8.3118 -2.5864 -3.9205 37 1 9.4747 -1.3672 -2.1744 38 1 10.2073 0.2567 -1.4027 39 1 10.5035 0.3887 0.3477 40 1 10.2217 -1.2066 -0.3892 41 1 7.0044 1.5940 -0.0562 42 1 8.6242 2.0246 0.5422 43 1 8.3281 1.8925 -1.2082 44 1 8.3640 -1.6250 1.2272 45 1 8.6458 -0.0297 1.9641 46 1 7.0253 -0.4601 1.3659 47 1 2.3618 -2.7372 0.8927 48 1 1.7161 -2.3093 2.4953 49 1 0.6516 -2.2764 1.0691 50 1 3.4925 -0.0644 5.2478 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485360751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:16 Heat of formation + Delta-G solvation = -25.626180 kcal Electronic energy + Delta-G solvation = -31191.773817 eV Core-core repulsion = 27220.041943 eV Total energy + Delta-G solvation = -3971.731874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.84892 -40.50979 -38.62168 -38.30039 -37.34332 -35.29242 -33.85262 -33.13818 -31.93074 -31.10199 -28.81275 -28.38746 -28.10944 -27.32168 -25.44159 -24.95341 -24.29927 -22.08167 -21.18011 -20.76978 -19.05371 -18.76184 -18.08062 -18.01408 -17.59032 -16.96155 -16.87050 -16.56448 -16.20132 -15.76227 -15.35368 -15.23964 -15.10036 -15.06952 -14.81824 -14.39128 -14.27975 -14.02910 -13.78249 -13.73270 -13.56245 -13.18376 -13.09442 -13.04964 -13.00371 -12.81466 -12.76993 -12.61754 -12.58952 -12.32211 -12.16498 -12.12220 -12.03756 -11.63368 -11.56979 -11.07779 -11.03872 -10.68252 -10.64185 -9.88019 -8.99869 -8.79324 -8.14696 -5.57397 -0.51102 0.87729 1.29034 1.39223 1.48586 1.51770 1.79627 2.42587 2.54229 2.77731 3.09767 3.29583 3.42591 3.68672 3.78716 3.87055 3.90078 3.96060 4.00753 4.02744 4.27101 4.33130 4.44372 4.49882 4.54389 4.60579 4.61753 4.64487 4.71858 4.73253 4.77068 4.82892 4.86800 4.89110 4.96211 4.97353 5.05568 5.19688 5.20412 5.26342 5.30077 5.33096 5.37496 5.58545 5.72454 5.95861 6.05386 6.21614 6.73905 6.96451 7.03908 7.42454 7.61709 8.04119 9.04401 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.004558 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.587140 B = 6141.852655 C = 7827.802366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.157 3.843 3 H 0.061 0.939 4 C 0.112 3.888 5 N -0.709 5.709 6 C 0.561 3.439 7 O -0.600 6.600 8 C -0.330 4.330 9 C 0.074 3.926 10 C -0.241 4.241 11 C 0.172 3.828 12 N -0.479 5.479 13 C 0.144 3.856 14 C -0.156 4.156 15 C -0.162 4.162 16 C -0.163 4.163 17 C 0.513 3.487 18 O -0.560 6.560 19 N -0.611 5.611 20 C 0.113 3.887 21 C -0.242 4.242 22 H 0.038 0.962 23 C -0.026 4.026 24 N -0.952 5.952 25 Si 0.955 3.045 26 H -0.284 1.284 27 H -0.311 1.311 28 H -0.251 1.251 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.418 0.582 35 H 0.151 0.849 36 H 0.201 0.799 37 H 0.225 0.775 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.037 0.963 47 H 0.007 0.993 48 H 0.030 0.970 49 H 0.061 0.939 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.280 -3.121 -16.059 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 H 0.079 0.921 4 C -0.014 4.014 5 N -0.368 5.368 6 C 0.351 3.649 7 O -0.485 6.485 8 C -0.337 4.337 9 C 0.050 3.950 10 C -0.263 4.263 11 C 0.041 3.959 12 N -0.186 5.186 13 C 0.063 3.937 14 C -0.213 4.213 15 C -0.220 4.220 16 C -0.221 4.221 17 C 0.316 3.684 18 O -0.444 6.444 19 N -0.335 5.335 20 C -0.031 4.031 21 C -0.372 4.372 22 H 0.056 0.944 23 C -0.221 4.221 24 N -0.597 5.597 25 Si 0.784 3.216 26 H -0.212 1.212 27 H -0.240 1.240 28 H -0.175 1.175 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.265 0.735 35 H 0.169 0.831 36 H 0.218 0.782 37 H 0.242 0.758 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.060 0.940 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.104 0.896 46 H 0.056 0.944 47 H 0.025 0.975 48 H 0.048 0.952 49 H 0.079 0.921 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.540 -2.989 -15.829 22.383 hybrid contribution -0.945 -0.079 1.395 1.687 sum 14.595 -3.068 -14.434 20.755 Atomic orbital electron populations 1.22083 0.94578 1.02165 1.02168 1.20831 0.94236 0.95084 0.84767 0.92108 1.21815 0.80554 1.00396 0.98631 1.46695 1.08318 1.57733 1.24052 1.18020 0.87418 0.77950 0.81547 1.90654 1.70515 1.48251 1.39110 1.20924 0.93441 1.14960 1.04418 1.22287 0.95387 0.85787 0.91507 1.21179 0.92519 1.08594 1.04005 1.23349 1.01760 0.86144 0.84607 1.45839 1.06875 1.41341 1.24563 1.21218 0.94215 0.92045 0.86266 1.22338 0.88576 1.05001 1.05401 1.22187 1.02595 0.93786 1.03392 1.22179 1.02508 1.01325 0.96076 1.17180 0.82124 0.82842 0.86266 1.90745 1.66930 1.47251 1.39434 1.44095 1.58960 1.07048 1.23427 1.21287 0.98305 0.85406 0.98083 1.18605 1.10434 1.21595 0.86562 0.94413 1.26093 0.99842 0.99952 0.96259 1.69980 1.33838 1.52885 1.02989 0.85704 0.82548 0.76915 0.76399 1.21173 1.24030 1.17525 0.89957 0.92330 0.93264 0.91194 0.92819 0.73523 0.83097 0.78163 0.75839 0.88590 0.88617 0.89183 0.94025 0.89370 0.90918 0.91864 0.89573 0.94406 0.97454 0.95173 0.92105 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.16 71.98 0.66 -4.61 16 2 C 0.16 6.73 2.88 44.99 0.13 6.86 16 3 H 0.06 2.77 7.89 -2.39 -0.02 2.75 16 4 C 0.11 4.59 4.98 86.38 0.43 5.02 16 5 N -0.71 -32.07 5.25 -466.69 -2.45 -34.52 16 6 C 0.56 23.90 7.74 86.56 0.67 24.57 16 7 O -0.60 -26.81 16.40 -4.19 -0.07 -26.88 16 8 C -0.33 -11.44 5.92 -19.79 -0.12 -11.56 16 9 C 0.07 1.73 9.70 22.83 0.22 1.95 16 10 C -0.24 -3.00 9.99 21.99 0.22 -2.78 16 11 C 0.17 2.08 9.58 83.56 0.80 2.88 16 12 N -0.48 -11.03 2.53 -605.54 -1.53 -12.57 16 13 C 0.14 3.00 1.02 3.60 0.00 3.00 16 14 C -0.16 -1.25 7.09 71.98 0.51 -0.74 16 15 C -0.16 -3.92 8.39 71.98 0.60 -3.31 16 16 C -0.16 -4.61 8.40 71.98 0.60 -4.00 16 17 C 0.51 17.99 6.84 85.16 0.58 18.57 16 18 O -0.56 -25.21 9.84 -4.93 -0.05 -25.26 16 19 N -0.61 -30.82 1.86 -702.79 -1.31 -32.13 16 20 C 0.11 5.32 8.43 127.77 1.08 6.40 16 21 C -0.24 -14.54 9.60 84.03 0.81 -13.74 16 22 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 23 C -0.03 -1.59 5.35 84.86 0.45 -1.14 16 24 N -0.95 -61.94 13.97 21.65 0.30 -61.64 16 25 Si 0.95 48.82 24.74 68.60 1.70 50.52 16 26 H -0.28 -14.08 6.74 99.48 0.67 -13.41 16 27 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 28 H -0.25 -12.04 7.06 99.48 0.70 -11.33 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.06 1.94 6.69 -2.39 -0.02 1.92 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.05 2.21 7.84 -2.39 -0.02 2.19 16 34 H 0.42 20.98 4.58 -92.71 -0.42 20.55 16 35 H 0.15 3.28 7.70 -2.91 -0.02 3.26 16 36 H 0.20 0.54 8.06 -2.91 -0.02 0.52 16 37 H 0.23 0.18 5.55 -2.91 -0.02 0.16 16 38 H 0.10 0.29 7.41 -2.39 -0.02 0.27 16 39 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.09 0.40 7.41 -2.39 -0.02 0.38 16 41 H 0.04 1.46 6.10 -2.39 -0.01 1.44 16 42 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.04 1.55 6.14 -2.39 -0.01 1.54 16 47 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.03 1.50 3.24 -2.39 -0.01 1.49 16 49 H 0.06 2.46 6.45 -2.39 -0.02 2.44 16 50 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -88.63 385.24 4.73 -83.90 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.48 Total: 31.20 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 7.66 Total: 27.37 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -4.99 Total: -140.86 kcal Atomic # 8 Polarization: -52.02 SS G_CDS: -0.12 Total: -52.14 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 1.70 Total: 50.52 kcal Total: -88.63 4.73 -83.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485360751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.274 kcal (2) G-P(sol) polarization free energy of solvation -88.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds