Wall clock time and date at job start Tue Mar 31 2020 18:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47222 * 2 1 4 4 C 1.53002 * 109.47481 * 120.00064 * 2 1 3 5 5 N 1.46497 * 109.47117 * 175.00182 * 4 2 1 6 6 C 1.34774 * 120.00137 * 180.02562 * 5 4 2 7 7 O 1.21650 * 120.00082 * 5.01112 * 6 5 4 8 8 C 1.47079 * 120.00411 * 185.01100 * 6 5 4 9 9 C 1.39335 * 120.59110 * 174.39753 * 8 6 5 10 10 C 1.39469 * 118.96480 * 180.29992 * 9 8 6 11 11 C 1.35768 * 120.12787 * 359.45738 * 10 9 8 12 12 N 1.35437 * 121.22534 * 0.52982 * 11 10 9 13 13 C 1.46497 * 119.46761 * 179.73296 * 12 11 10 14 14 C 1.53004 * 109.47188 * 240.02375 * 13 12 11 15 15 C 1.53005 * 109.47271 * 0.02562 * 13 12 11 16 16 C 1.52998 * 109.47264 * 120.02376 * 13 12 11 17 17 C 1.34653 * 121.06033 * 359.75685 * 12 11 10 18 18 O 1.21890 * 120.10251 * 179.97438 * 17 12 11 19 19 N 1.46501 * 109.47054 * 240.00324 * 2 1 3 20 20 C 1.46494 * 119.99988 * 299.99767 * 19 2 1 21 21 C 1.36941 * 120.00214 * 119.99972 * 19 2 1 22 22 H 1.08002 * 119.99722 * 25.00385 * 21 19 2 23 23 C 1.38807 * 119.99937 * 205.01180 * 21 19 2 24 24 N 1.31618 * 120.00306 * 9.96779 * 23 21 19 25 25 Si 1.86806 * 119.99946 * 189.96824 * 23 21 19 26 26 H 1.48493 * 109.46796 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47024 * 119.99719 * 25 23 21 28 28 H 1.48498 * 109.46957 * 239.99750 * 25 23 21 29 29 H 1.08997 * 109.47155 * 299.99631 * 1 2 3 30 30 H 1.08994 * 109.47361 * 59.99967 * 1 2 3 31 31 H 1.09002 * 109.46788 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46838 * 54.99959 * 4 2 1 33 33 H 1.08999 * 109.47043 * 294.99605 * 4 2 1 34 34 H 0.96999 * 119.99998 * 359.97438 * 5 4 2 35 35 H 1.08001 * 120.52089 * 0.02562 * 9 8 6 36 36 H 1.08000 * 119.93830 * 179.70120 * 10 9 8 37 37 H 1.07995 * 119.38662 * 180.26740 * 11 10 9 38 38 H 1.09002 * 109.47189 * 60.00096 * 14 13 12 39 39 H 1.09003 * 109.47254 * 179.97438 * 14 13 12 40 40 H 1.08994 * 109.46907 * 300.00355 * 14 13 12 41 41 H 1.09007 * 109.47069 * 60.00042 * 15 13 12 42 42 H 1.09003 * 109.47471 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.47322 * 300.00036 * 15 13 12 44 44 H 1.08990 * 109.47154 * 60.00037 * 16 13 12 45 45 H 1.09003 * 109.46998 * 180.02562 * 16 13 12 46 46 H 1.09007 * 109.46882 * 299.99839 * 16 13 12 47 47 H 1.09001 * 109.47479 * 85.77103 * 20 19 2 48 48 H 1.09001 * 109.47487 * 205.77421 * 20 19 2 49 49 H 1.09008 * 109.47447 * 325.77281 * 20 19 2 50 50 H 0.96998 * 120.00597 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1731 -1.4291 2.1905 7 8 3.5641 -1.9659 3.0965 8 6 5.6439 -1.4378 2.1866 9 6 6.3528 -1.9539 3.2694 10 6 7.7469 -1.9396 3.2326 11 6 8.3949 -1.4388 2.1498 12 7 7.7123 -0.9360 1.0935 13 6 8.4508 -0.4000 -0.0526 14 6 8.0927 1.0750 -0.2454 15 6 9.9537 -0.5309 0.2026 16 6 8.0772 -1.1843 -1.3120 17 6 6.3660 -0.9205 1.0802 18 8 5.7694 -0.4633 0.1206 19 7 2.0183 -0.6905 -1.1962 20 6 1.6644 -2.0931 -1.4281 21 6 2.8055 -0.0250 -2.0976 22 1 3.3939 0.8225 -1.7783 23 6 2.8472 -0.4396 -3.4217 24 7 1.9908 -1.3393 -3.8569 25 14 4.1189 0.2794 -4.5860 26 1 4.9571 1.2643 -3.8563 27 1 4.9797 -0.8100 -5.1127 28 1 3.4303 0.9557 -5.7145 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 1.2951 33 1 1.7518 -0.1583 2.1369 34 1 3.9823 -0.4627 0.4315 35 1 5.8309 -2.3548 4.1258 36 1 8.3121 -2.3312 4.0655 37 1 9.4747 -1.4376 2.1321 38 1 8.3589 1.6338 0.6518 39 1 8.6425 1.4739 -1.0979 40 1 7.0221 1.1681 -0.4271 41 1 10.2088 -1.5817 0.3399 42 1 10.5032 -0.1317 -0.6500 43 1 10.2200 0.0279 1.0998 44 1 7.0066 -1.0912 -1.4938 45 1 8.6270 -0.7858 -2.1647 46 1 8.3323 -2.2352 -1.1746 47 1 0.7001 -2.1458 -1.9335 48 1 2.4267 -2.5621 -2.0502 49 1 1.6030 -2.6151 -0.4731 50 1 2.0201 -1.6294 -4.7820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485360752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:19 Heat of formation + Delta-G solvation = -4.739290 kcal Electronic energy + Delta-G solvation = -31314.991711 eV Core-core repulsion = 27344.165561 eV Total energy + Delta-G solvation = -3970.826151 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.85683 -39.01549 -37.15765 -36.76879 -36.22219 -33.44301 -32.22655 -31.70486 -30.19607 -29.15561 -28.08132 -27.45279 -25.91463 -25.85025 -24.15730 -23.39005 -22.76643 -20.96688 -19.80094 -19.09581 -17.73822 -17.13536 -16.90430 -16.66444 -15.92708 -15.76866 -15.16147 -15.02434 -14.52728 -14.44502 -14.17408 -13.96325 -13.84601 -13.63595 -12.95378 -12.78582 -12.62623 -12.59907 -12.39128 -12.27883 -12.21654 -12.14801 -11.94277 -11.84061 -11.61727 -11.35810 -11.30369 -11.26838 -10.90272 -10.72576 -10.62892 -10.24974 -10.10512 -10.03933 -9.74705 -9.69301 -9.57140 -9.38198 -8.40320 -8.25836 -7.93649 -6.59643 -5.60898 -3.05547 0.45252 1.80745 2.38782 3.07764 3.43212 3.49762 3.53413 3.94889 3.99220 4.21272 4.29568 4.53135 4.59563 4.64678 4.78855 4.87745 5.06383 5.13139 5.23472 5.26937 5.49076 5.50609 5.53722 5.57501 5.59637 5.67302 5.74296 5.79059 5.85663 5.99747 6.08769 6.16226 6.20193 6.27506 6.31448 6.35518 6.44538 6.51300 6.58792 6.93383 6.97604 7.03472 7.08825 7.33742 7.55095 7.84521 7.94495 7.99438 8.49700 8.55291 9.04850 9.37576 9.99726 10.50330 11.45816 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010051 B = 0.005359 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.205946 B = 5223.318099 C = 7430.320572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.158 3.842 3 H 0.066 0.934 4 C 0.104 3.896 5 N -0.690 5.690 6 C 0.566 3.434 7 O -0.572 6.572 8 C -0.264 4.264 9 C 0.047 3.953 10 C -0.246 4.246 11 C 0.149 3.851 12 N -0.482 5.482 13 C 0.146 3.854 14 C -0.166 4.166 15 C -0.163 4.163 16 C -0.168 4.168 17 C 0.523 3.477 18 O -0.507 6.507 19 N -0.590 5.590 20 C 0.166 3.834 21 C -0.238 4.238 22 H 0.067 0.933 23 C 0.001 3.999 24 N -0.910 5.910 25 Si 0.900 3.100 26 H -0.277 1.277 27 H -0.292 1.292 28 H -0.294 1.294 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.426 0.574 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.167 0.833 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.073 0.927 46 H 0.057 0.943 47 H 0.015 0.985 48 H 0.055 0.945 49 H -0.008 1.008 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.643 0.995 12.416 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.050 3.950 3 H 0.084 0.916 4 C -0.022 4.022 5 N -0.350 5.350 6 C 0.352 3.648 7 O -0.455 6.455 8 C -0.271 4.271 9 C 0.024 3.976 10 C -0.270 4.270 11 C 0.018 3.982 12 N -0.191 5.191 13 C 0.063 3.937 14 C -0.223 4.223 15 C -0.220 4.220 16 C -0.226 4.226 17 C 0.324 3.676 18 O -0.386 6.386 19 N -0.312 5.312 20 C 0.022 3.978 21 C -0.368 4.368 22 H 0.085 0.915 23 C -0.197 4.197 24 N -0.556 5.556 25 Si 0.731 3.269 26 H -0.202 1.202 27 H -0.219 1.219 28 H -0.221 1.221 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.274 0.726 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.184 0.816 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.091 0.909 46 H 0.076 0.924 47 H 0.034 0.966 48 H 0.073 0.927 49 H 0.011 0.989 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 16.833 0.948 12.073 20.737 hybrid contribution 0.960 0.283 -0.993 1.410 sum 17.793 1.231 11.080 20.996 Atomic orbital electron populations 1.22161 0.97609 1.01280 1.00400 1.20602 0.92376 0.95509 0.86560 0.91579 1.21918 0.80387 1.01027 0.98914 1.46496 1.08088 1.56784 1.23640 1.17448 0.85580 0.79054 0.82702 1.90715 1.69396 1.47395 1.38012 1.21186 0.95244 1.13218 0.97474 1.21951 0.93376 0.86306 0.95958 1.20605 0.94423 1.11574 1.00382 1.22278 0.99269 0.90375 0.86249 1.45762 1.08027 1.48812 1.16532 1.21048 0.91258 0.95810 0.85547 1.22254 1.05740 0.92209 1.02096 1.22306 0.93305 1.02801 1.03600 1.22282 1.06047 0.99120 0.95135 1.17099 0.80477 0.81420 0.88583 1.90757 1.65419 1.47454 1.34995 1.43900 1.57911 1.07949 1.21484 1.20689 0.99450 0.83595 0.94084 1.19227 1.16992 1.12297 0.88262 0.91538 1.24997 0.98369 0.99618 0.96674 1.70071 1.36370 1.34194 1.14952 0.86227 0.81278 0.78382 0.81029 1.20194 1.21945 1.22095 0.94083 0.92283 0.93205 0.92275 0.92873 0.72566 0.83659 0.83310 0.81578 0.92535 0.90821 0.88905 0.91325 0.89857 0.91385 0.88574 0.90857 0.92440 0.96635 0.92664 0.98925 0.94080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.19 37.15 0.34 -2.67 16 2 C 0.16 3.45 2.87 -67.93 -0.20 3.25 16 3 H 0.07 1.44 7.88 -51.93 -0.41 1.03 16 4 C 0.10 2.15 4.91 -4.04 -0.02 2.13 16 5 N -0.69 -14.75 5.30 -61.49 -0.33 -15.08 16 6 C 0.57 11.49 7.74 -12.68 -0.10 11.40 16 7 O -0.57 -12.57 16.41 5.23 0.09 -12.48 16 8 C -0.26 -4.37 5.92 -104.51 -0.62 -4.99 16 9 C 0.05 0.59 9.69 -38.72 -0.38 0.21 16 10 C -0.25 -2.08 9.99 -40.01 -0.40 -2.48 16 11 C 0.15 1.21 9.58 -16.84 -0.16 1.05 16 12 N -0.48 -5.64 2.53 -105.38 -0.27 -5.91 16 13 C 0.15 1.52 1.02 -131.82 -0.13 1.38 16 14 C -0.17 -1.88 8.39 37.16 0.31 -1.56 16 15 C -0.16 -0.98 7.09 37.16 0.26 -0.72 16 16 C -0.17 -2.11 8.39 37.16 0.31 -1.80 16 17 C 0.52 8.49 6.84 -14.92 -0.10 8.38 16 18 O -0.51 -9.96 9.83 5.02 0.05 -9.91 16 19 N -0.59 -15.18 2.28 -173.48 -0.40 -15.57 16 20 C 0.17 4.37 8.07 59.84 0.48 4.85 16 21 C -0.24 -6.64 9.30 -15.06 -0.14 -6.78 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C 0.00 0.02 5.10 -17.43 -0.09 -0.06 16 24 N -0.91 -27.21 10.72 55.49 0.59 -26.62 16 25 Si 0.90 22.45 29.57 -169.99 -5.03 17.42 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.05 0.98 7.67 -51.93 -0.40 0.58 16 32 H 0.06 1.29 6.91 -51.93 -0.36 0.93 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.43 9.65 4.49 -40.82 -0.18 9.47 16 35 H 0.15 1.69 7.70 -52.49 -0.40 1.29 16 36 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.17 0.69 5.55 -52.49 -0.29 0.39 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 1.41 6.12 -51.93 -0.32 1.09 16 41 H 0.07 0.34 7.41 -51.93 -0.38 -0.05 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.31 7.41 -51.93 -0.38 -0.07 16 44 H 0.10 1.64 6.12 -51.93 -0.32 1.32 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.02 0.43 7.82 -51.93 -0.41 0.02 16 48 H 0.05 1.58 6.76 -51.93 -0.35 1.23 16 49 H -0.01 -0.19 6.55 -51.92 -0.34 -0.53 16 50 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -34.89 389.77 -7.93 -42.82 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.90 Total: 7.85 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: -0.62 Total: 11.59 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.39 Total: -63.18 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: 0.14 Total: -22.39 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.03 Total: 17.42 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.89 -7.93 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485360752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.084 kcal (2) G-P(sol) polarization free energy of solvation -34.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds