Wall clock time and date at job start Tue Mar 31 2020 18:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47222 * 2 1 4 4 C 1.53002 * 109.47481 * 120.00064 * 2 1 3 5 5 N 1.46497 * 109.47117 * 175.00182 * 4 2 1 6 6 C 1.34774 * 120.00137 * 180.02562 * 5 4 2 7 7 O 1.21650 * 120.00082 * 5.01112 * 6 5 4 8 8 C 1.47079 * 120.00411 * 185.01100 * 6 5 4 9 9 C 1.39335 * 120.59110 * 174.39753 * 8 6 5 10 10 C 1.39469 * 118.96480 * 180.29992 * 9 8 6 11 11 C 1.35768 * 120.12787 * 359.45738 * 10 9 8 12 12 N 1.35437 * 121.22534 * 0.52982 * 11 10 9 13 13 C 1.46497 * 119.46761 * 179.73296 * 12 11 10 14 14 C 1.53004 * 109.47188 * 240.02375 * 13 12 11 15 15 C 1.53005 * 109.47271 * 0.02562 * 13 12 11 16 16 C 1.52998 * 109.47264 * 120.02376 * 13 12 11 17 17 C 1.34653 * 121.06033 * 359.75685 * 12 11 10 18 18 O 1.21890 * 120.10251 * 179.97438 * 17 12 11 19 19 N 1.46501 * 109.47054 * 240.00324 * 2 1 3 20 20 C 1.46494 * 119.99988 * 299.99767 * 19 2 1 21 21 C 1.36941 * 120.00214 * 119.99972 * 19 2 1 22 22 H 1.08002 * 119.99722 * 25.00385 * 21 19 2 23 23 C 1.38807 * 119.99937 * 205.01180 * 21 19 2 24 24 N 1.31618 * 120.00306 * 9.96779 * 23 21 19 25 25 Si 1.86806 * 119.99946 * 189.96824 * 23 21 19 26 26 H 1.48493 * 109.46796 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47024 * 119.99719 * 25 23 21 28 28 H 1.48498 * 109.46957 * 239.99750 * 25 23 21 29 29 H 1.08997 * 109.47155 * 299.99631 * 1 2 3 30 30 H 1.08994 * 109.47361 * 59.99967 * 1 2 3 31 31 H 1.09002 * 109.46788 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46838 * 54.99959 * 4 2 1 33 33 H 1.08999 * 109.47043 * 294.99605 * 4 2 1 34 34 H 0.96999 * 119.99998 * 359.97438 * 5 4 2 35 35 H 1.08001 * 120.52089 * 0.02562 * 9 8 6 36 36 H 1.08000 * 119.93830 * 179.70120 * 10 9 8 37 37 H 1.07995 * 119.38662 * 180.26740 * 11 10 9 38 38 H 1.09002 * 109.47189 * 60.00096 * 14 13 12 39 39 H 1.09003 * 109.47254 * 179.97438 * 14 13 12 40 40 H 1.08994 * 109.46907 * 300.00355 * 14 13 12 41 41 H 1.09007 * 109.47069 * 60.00042 * 15 13 12 42 42 H 1.09003 * 109.47471 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.47322 * 300.00036 * 15 13 12 44 44 H 1.08990 * 109.47154 * 60.00037 * 16 13 12 45 45 H 1.09003 * 109.46998 * 180.02562 * 16 13 12 46 46 H 1.09007 * 109.46882 * 299.99839 * 16 13 12 47 47 H 1.09001 * 109.47479 * 85.77103 * 20 19 2 48 48 H 1.09001 * 109.47487 * 205.77421 * 20 19 2 49 49 H 1.09008 * 109.47447 * 325.77281 * 20 19 2 50 50 H 0.96998 * 120.00597 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1731 -1.4291 2.1905 7 8 3.5641 -1.9659 3.0965 8 6 5.6439 -1.4378 2.1866 9 6 6.3528 -1.9539 3.2694 10 6 7.7469 -1.9396 3.2326 11 6 8.3949 -1.4388 2.1498 12 7 7.7123 -0.9360 1.0935 13 6 8.4508 -0.4000 -0.0526 14 6 8.0927 1.0750 -0.2454 15 6 9.9537 -0.5309 0.2026 16 6 8.0772 -1.1843 -1.3120 17 6 6.3660 -0.9205 1.0802 18 8 5.7694 -0.4633 0.1206 19 7 2.0183 -0.6905 -1.1962 20 6 1.6644 -2.0931 -1.4281 21 6 2.8055 -0.0250 -2.0976 22 1 3.3939 0.8225 -1.7783 23 6 2.8472 -0.4396 -3.4217 24 7 1.9908 -1.3393 -3.8569 25 14 4.1189 0.2794 -4.5860 26 1 4.9571 1.2643 -3.8563 27 1 4.9797 -0.8100 -5.1127 28 1 3.4303 0.9557 -5.7145 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6054 -1.7198 1.2951 33 1 1.7518 -0.1583 2.1369 34 1 3.9823 -0.4627 0.4315 35 1 5.8309 -2.3548 4.1258 36 1 8.3121 -2.3312 4.0655 37 1 9.4747 -1.4376 2.1321 38 1 8.3589 1.6338 0.6518 39 1 8.6425 1.4739 -1.0979 40 1 7.0221 1.1681 -0.4271 41 1 10.2088 -1.5817 0.3399 42 1 10.5032 -0.1317 -0.6500 43 1 10.2200 0.0279 1.0998 44 1 7.0066 -1.0912 -1.4938 45 1 8.6270 -0.7858 -2.1647 46 1 8.3323 -2.2352 -1.1746 47 1 0.7001 -2.1458 -1.9335 48 1 2.4267 -2.5621 -2.0502 49 1 1.6030 -2.6151 -0.4731 50 1 2.0201 -1.6294 -4.7820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485360752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:18 Heat of formation + Delta-G solvation = -28.093299 kcal Electronic energy + Delta-G solvation = -31316.004417 eV Core-core repulsion = 27344.165561 eV Total energy + Delta-G solvation = -3971.838856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.84569 -40.48707 -38.45884 -38.28191 -37.33353 -35.30017 -33.66538 -33.10282 -31.33458 -30.98539 -28.81362 -28.39271 -28.05339 -27.29763 -25.32935 -24.88694 -24.29613 -22.08298 -21.16386 -20.76152 -18.96466 -18.74317 -18.08001 -17.99542 -17.20823 -16.91844 -16.86137 -16.50319 -16.11222 -15.61718 -15.43882 -15.26529 -15.11196 -14.83562 -14.62118 -14.51602 -14.02439 -13.77686 -13.62302 -13.54113 -13.18261 -13.11062 -13.04973 -13.02091 -12.89795 -12.78146 -12.69533 -12.59268 -12.55728 -12.32030 -12.16804 -12.12390 -12.11648 -11.84952 -11.55731 -11.07338 -11.02698 -10.64541 -10.61290 -9.86381 -8.99183 -8.74939 -7.82135 -5.28371 -0.50565 0.87944 1.40409 1.40888 1.48234 1.53427 1.80718 2.49070 2.57246 2.78053 3.34283 3.42322 3.61723 3.69220 3.78277 3.87416 3.89906 3.98311 4.02201 4.06517 4.27844 4.34948 4.53424 4.55605 4.59406 4.61882 4.68208 4.71965 4.73256 4.82481 4.85906 4.88744 4.96905 4.99281 5.06022 5.17982 5.18843 5.27158 5.29239 5.31145 5.34058 5.38557 5.57983 5.61650 5.67631 5.74728 6.05038 6.36559 6.75760 7.04503 7.16863 7.46090 7.86560 8.33091 9.23742 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010051 B = 0.005359 C = 0.003767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.205946 B = 5223.318099 C = 7430.320572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.156 3.844 3 H 0.063 0.937 4 C 0.112 3.888 5 N -0.706 5.706 6 C 0.559 3.441 7 O -0.602 6.602 8 C -0.328 4.328 9 C 0.073 3.927 10 C -0.241 4.241 11 C 0.172 3.828 12 N -0.479 5.479 13 C 0.143 3.857 14 C -0.164 4.164 15 C -0.157 4.157 16 C -0.168 4.168 17 C 0.514 3.486 18 O -0.557 6.557 19 N -0.600 5.600 20 C 0.190 3.810 21 C -0.237 4.237 22 H 0.061 0.939 23 C -0.053 4.053 24 N -0.940 5.940 25 Si 0.963 3.037 26 H -0.269 1.269 27 H -0.293 1.293 28 H -0.291 1.291 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.419 0.581 35 H 0.149 0.851 36 H 0.200 0.800 37 H 0.225 0.775 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.041 0.959 45 H 0.088 0.912 46 H 0.064 0.936 47 H -0.001 1.001 48 H 0.023 0.977 49 H 0.006 0.994 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.119 1.237 14.573 26.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.049 3.951 3 H 0.081 0.919 4 C -0.014 4.014 5 N -0.365 5.365 6 C 0.349 3.651 7 O -0.488 6.488 8 C -0.335 4.335 9 C 0.049 3.951 10 C -0.263 4.263 11 C 0.042 3.958 12 N -0.186 5.186 13 C 0.061 3.939 14 C -0.222 4.222 15 C -0.214 4.214 16 C -0.226 4.226 17 C 0.317 3.683 18 O -0.441 6.441 19 N -0.323 5.323 20 C 0.044 3.956 21 C -0.368 4.368 22 H 0.079 0.921 23 C -0.247 4.247 24 N -0.588 5.588 25 Si 0.792 3.208 26 H -0.194 1.194 27 H -0.221 1.221 28 H -0.218 1.218 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.267 0.733 35 H 0.167 0.833 36 H 0.217 0.783 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.060 0.940 45 H 0.106 0.894 46 H 0.083 0.917 47 H 0.017 0.983 48 H 0.042 0.958 49 H 0.025 0.975 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 21.339 1.205 14.272 25.700 hybrid contribution -0.265 0.187 -1.523 1.557 sum 21.074 1.391 12.749 24.669 Atomic orbital electron populations 1.22019 0.95403 1.01374 1.01511 1.20766 0.93974 0.95022 0.85321 0.91866 1.21776 0.80732 1.00139 0.98773 1.46671 1.08108 1.57595 1.24126 1.18072 0.87517 0.77845 0.81672 1.90660 1.70597 1.48727 1.38819 1.20903 0.93236 1.19043 1.00317 1.22281 0.95411 0.83246 0.94139 1.21167 0.92457 1.10689 1.01939 1.23330 1.01706 0.86598 0.84168 1.45821 1.06809 1.48039 1.17909 1.21231 0.94182 0.94324 0.84141 1.22212 1.02802 0.93682 1.03482 1.22342 0.88666 1.04841 1.05522 1.22240 1.02669 1.00285 0.97391 1.17129 0.82085 0.81203 0.87858 1.90722 1.66793 1.49917 1.36672 1.44000 1.58147 1.07882 1.22246 1.20314 0.97271 0.84181 0.93789 1.19376 1.16886 1.11792 0.88726 0.92146 1.25693 1.00358 1.00434 0.98185 1.70220 1.37969 1.35653 1.14965 0.85249 0.79045 0.77661 0.78886 1.19353 1.22058 1.21797 0.90264 0.93748 0.93608 0.93734 0.91115 0.73339 0.83282 0.78283 0.75860 0.90969 0.89323 0.93719 0.89210 0.88605 0.88704 0.94011 0.89358 0.91678 0.98320 0.95832 0.97543 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 9.19 71.98 0.66 -4.99 16 2 C 0.16 7.07 2.87 44.99 0.13 7.20 16 3 H 0.06 2.87 7.88 -2.38 -0.02 2.85 16 4 C 0.11 4.83 4.91 86.38 0.42 5.25 16 5 N -0.71 -32.08 5.30 -466.71 -2.47 -34.55 16 6 C 0.56 23.95 7.74 86.56 0.67 24.61 16 7 O -0.60 -27.53 16.41 -4.19 -0.07 -27.60 16 8 C -0.33 -11.11 5.92 -19.79 -0.12 -11.23 16 9 C 0.07 1.67 9.69 22.83 0.22 1.89 16 10 C -0.24 -2.81 9.99 21.99 0.22 -2.59 16 11 C 0.17 1.87 9.58 83.56 0.80 2.67 16 12 N -0.48 -10.16 2.53 -605.52 -1.53 -11.69 16 13 C 0.14 2.64 1.02 3.61 0.00 2.65 16 14 C -0.16 -3.58 8.39 71.98 0.60 -2.98 16 15 C -0.16 -0.98 7.09 71.98 0.51 -0.47 16 16 C -0.17 -4.17 8.39 71.98 0.60 -3.56 16 17 C 0.51 17.15 6.84 85.17 0.58 17.74 16 18 O -0.56 -23.70 9.83 -4.96 -0.05 -23.75 16 19 N -0.60 -32.44 2.28 -702.78 -1.60 -34.04 16 20 C 0.19 10.51 8.07 127.77 1.03 11.54 16 21 C -0.24 -13.91 9.30 84.03 0.78 -13.12 16 22 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 23 C -0.05 -3.12 5.10 84.86 0.43 -2.69 16 24 N -0.94 -58.68 10.72 21.65 0.23 -58.45 16 25 Si 0.96 48.14 29.57 68.60 2.03 50.17 16 26 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 27 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 28 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 29 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.82 7.67 -2.39 -0.02 1.80 16 32 H 0.04 2.02 6.91 -2.39 -0.02 2.01 16 33 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.42 20.49 4.49 -92.77 -0.42 20.07 16 35 H 0.15 3.23 7.70 -2.91 -0.02 3.21 16 36 H 0.20 0.44 8.06 -2.91 -0.02 0.41 16 37 H 0.23 -0.08 5.55 -2.91 -0.02 -0.10 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 40 H 0.04 1.44 6.12 -2.39 -0.01 1.42 16 41 H 0.09 0.25 7.41 -2.38 -0.02 0.23 16 42 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.09 0.16 7.41 -2.39 -0.02 0.14 16 44 H 0.04 1.52 6.12 -2.39 -0.01 1.50 16 45 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 47 H 0.00 -0.08 7.82 -2.39 -0.02 -0.10 16 48 H 0.02 1.41 6.76 -2.39 -0.02 1.40 16 49 H 0.01 0.32 6.55 -2.38 -0.02 0.31 16 50 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -86.00 389.77 4.62 -81.38 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.52 Total: 26.62 kcal Atomic # 6 Polarization: 24.36 SS G_CDS: 7.56 Total: 31.92 kcal Atomic # 7 Polarization: -133.36 SS G_CDS: -5.38 Total: -138.74 kcal Atomic # 8 Polarization: -51.23 SS G_CDS: -0.12 Total: -51.35 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -86.00 4.62 -81.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485360752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.289 kcal (2) G-P(sol) polarization free energy of solvation -85.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds