Wall clock time and date at job start Tue Mar 31 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.53004 * 109.46999 * 239.99751 * 2 1 3 5 5 N 1.46500 * 109.47167 * 184.99821 * 4 2 1 6 6 C 1.36938 * 119.99982 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99591 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99937 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99953 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99789 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47169 * 89.99959 * 10 8 6 12 12 H 1.48503 * 109.47120 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47235 * 329.99987 * 10 8 6 14 14 N 1.46502 * 109.47191 * 120.00062 * 2 1 3 15 15 C 1.46499 * 119.99893 * 59.99938 * 14 2 1 16 16 C 1.34771 * 120.00155 * 239.99948 * 14 2 1 17 17 O 1.21493 * 120.00169 * 3.04626 * 16 14 2 18 18 C 1.48338 * 120.00115 * 183.05342 * 16 14 2 19 19 N 1.31491 * 127.15333 * 354.88526 * 18 16 14 20 20 O 1.21433 * 111.52680 * 179.97438 * 19 18 16 21 21 C 1.33185 * 111.56916 * 359.94671 * 20 19 18 22 22 C 1.35380 * 106.63214 * 0.09008 * 21 20 19 23 23 C 1.50065 * 124.93402 * 179.79231 * 22 21 20 24 24 C 1.53547 * 108.23284 * 343.89446 * 23 22 21 25 25 C 1.53001 * 109.46388 * 169.20828 * 24 23 22 26 26 C 1.53000 * 109.46402 * 289.18330 * 24 23 22 27 27 C 1.53070 * 109.53093 * 49.18148 * 24 23 22 28 28 C 1.50596 * 129.60485 * 180.09188 * 21 20 19 29 29 H 1.08992 * 109.47344 * 59.99644 * 1 2 3 30 30 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46651 * 299.99637 * 1 2 3 32 32 H 1.08994 * 109.47398 * 305.00335 * 4 2 1 33 33 H 1.09003 * 109.46518 * 65.00427 * 4 2 1 34 34 H 0.97004 * 119.99996 * 0.02562 * 5 4 2 35 35 H 0.96997 * 120.00070 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.47314 * 263.96413 * 15 14 2 37 37 H 1.09003 * 109.47477 * 23.96355 * 15 14 2 38 38 H 1.09002 * 109.47302 * 143.95852 * 15 14 2 39 39 H 1.09006 * 109.71220 * 103.57842 * 23 22 21 40 40 H 1.09000 * 109.71207 * 224.16131 * 23 22 21 41 41 H 1.09003 * 109.47038 * 59.99698 * 25 24 23 42 42 H 1.08995 * 109.47517 * 179.97438 * 25 24 23 43 43 H 1.08995 * 109.47278 * 300.00158 * 25 24 23 44 44 H 1.08994 * 109.46909 * 60.00157 * 26 24 23 45 45 H 1.09003 * 109.46876 * 180.02562 * 26 24 23 46 46 H 1.09003 * 109.47151 * 300.00230 * 26 24 23 47 47 H 1.08992 * 109.43303 * 170.08444 * 27 24 23 48 48 H 1.09000 * 109.40749 * 50.25162 * 27 24 23 49 49 H 1.08999 * 109.69045 * 282.98867 * 28 21 20 50 50 H 1.09000 * 109.69501 * 43.58175 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4380 -2.2073 7 1 3.6467 -1.8432 -3.0521 8 6 5.5673 -1.5381 -2.1515 9 7 6.2216 -1.0456 -1.1212 10 14 6.4999 -2.3730 -3.5379 11 1 6.8626 -1.3659 -4.5673 12 1 7.7350 -2.9965 -2.9985 13 1 5.6435 -3.4203 -4.1503 14 7 2.0184 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7932 -0.0357 2.0833 17 8 3.0412 1.1424 1.9199 18 6 3.3434 -0.7532 3.2592 19 7 3.0927 -1.9918 3.6226 20 8 3.6971 -2.2910 4.6324 21 6 4.4387 -1.2782 5.0773 22 6 4.2442 -0.2492 4.2193 23 6 4.8852 1.1024 4.3389 24 6 5.4422 1.2456 5.7626 25 6 6.3304 2.4890 5.8399 26 6 4.2834 1.3847 6.7519 27 6 6.2679 0.0061 6.1161 28 6 5.3403 -1.2048 6.2814 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6054 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1369 34 1 3.9824 -0.4628 -0.4316 35 1 7.1883 -1.1158 -1.0820 36 1 0.7989 -2.1452 2.0884 37 1 1.4250 -2.5695 0.4772 38 1 2.5061 -2.6087 1.8907 39 1 5.6965 1.1899 3.6162 40 1 4.1429 1.8789 4.1540 41 1 5.7422 3.3718 5.5892 42 1 6.7255 2.5911 6.8505 43 1 7.1558 2.3903 5.1349 44 1 3.6503 0.4992 6.6967 45 1 4.6787 1.4868 7.7625 46 1 3.6956 2.2677 6.5011 47 1 6.8045 0.1817 7.0484 48 1 6.9838 -0.1918 5.3183 49 1 4.7397 -1.0871 7.1833 50 1 5.9346 -2.1159 6.3513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496119648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:28 Heat of formation + Delta-G solvation = 36.056459 kcal Electronic energy + Delta-G solvation = -30865.097986 eV Core-core repulsion = 26896.040872 eV Total energy + Delta-G solvation = -3969.057114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.92754 -39.62133 -39.07735 -36.39599 -34.21628 -33.69073 -32.91328 -31.77058 -30.34327 -29.90951 -27.48468 -27.29716 -26.59960 -25.66599 -24.51715 -23.74744 -22.51771 -21.66201 -20.71654 -19.06469 -18.31724 -17.64605 -17.07955 -17.02874 -16.54959 -15.76935 -15.19063 -14.93397 -14.71848 -14.57767 -14.51458 -13.73636 -13.59901 -13.43669 -13.31127 -13.25771 -13.19891 -12.77359 -12.30201 -12.27837 -12.23289 -12.20708 -12.02139 -11.89686 -11.88294 -11.72682 -11.49406 -10.94914 -10.84402 -10.79399 -10.75732 -10.72879 -10.51906 -10.42207 -10.04212 -9.98617 -9.74243 -9.67894 -8.97359 -8.85149 -8.26928 -6.88190 -5.71253 -3.00724 1.32564 1.86198 2.94566 3.16948 3.45261 3.49693 3.51682 3.54275 4.14117 4.41298 4.50004 4.57896 4.61689 4.85297 4.93686 5.01584 5.09975 5.20764 5.23307 5.42177 5.45485 5.47352 5.52470 5.52815 5.60331 5.61921 5.64083 5.66388 5.69486 5.72041 5.83913 5.86867 5.90557 5.95299 6.00582 6.04808 6.10913 6.19474 6.20186 6.28479 6.28842 6.37287 6.40279 6.51733 6.72656 6.98011 7.64667 7.72079 8.15309 8.45036 8.46055 9.57377 10.15707 10.50925 11.50993 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.003946 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.501535 B = 7094.602842 C = 8212.672547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.126 3.874 3 H 0.102 0.898 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.241 4.241 7 H 0.070 0.930 8 C -0.012 4.012 9 N -0.929 5.929 10 Si 0.906 3.094 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.580 5.580 15 C 0.078 3.922 16 C 0.600 3.400 17 O -0.524 6.524 18 C -0.002 4.002 19 N -0.332 5.332 20 O 0.116 5.884 21 C -0.045 4.045 22 C -0.143 4.143 23 C -0.035 4.035 24 C -0.067 4.067 25 C -0.140 4.140 26 C -0.144 4.144 27 C -0.109 4.109 28 C -0.033 4.033 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.022 0.978 33 H 0.031 0.969 34 H 0.385 0.615 35 H 0.254 0.746 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.093 0.907 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.692 2.236 18.958 19.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.120 0.880 4 C 0.015 3.985 5 N -0.373 5.373 6 C -0.372 4.372 7 H 0.088 0.912 8 C -0.209 4.209 9 N -0.578 5.578 10 Si 0.737 3.263 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.312 5.312 15 C -0.065 4.065 16 C 0.385 3.615 17 O -0.399 6.399 18 C -0.159 4.159 19 N -0.037 5.037 20 O 0.046 5.954 21 C -0.109 4.109 22 C -0.147 4.147 23 C -0.073 4.073 24 C -0.067 4.067 25 C -0.197 4.197 26 C -0.201 4.201 27 C -0.147 4.147 28 C -0.071 4.071 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.075 0.925 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.111 0.889 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.320 1.833 18.150 19.306 hybrid contribution 1.073 0.003 -0.620 1.239 sum -5.247 1.836 17.530 18.390 Atomic orbital electron populations 1.22050 0.94855 1.02217 1.02118 1.21487 0.93529 0.98482 0.84227 0.87993 1.21022 0.87163 0.96840 0.93495 1.42299 0.99653 1.70197 1.25117 1.19210 0.89443 1.29494 0.99045 0.91238 1.24744 0.96437 1.01665 0.98011 1.69690 1.07085 1.50872 1.30108 0.86205 0.79522 0.79015 0.81530 1.21711 1.21833 1.20803 1.47526 1.49123 1.12688 1.21852 1.21984 1.01292 0.81316 1.01913 1.16854 0.78291 0.85719 0.80586 1.90752 1.59321 1.14810 1.75010 1.22971 1.01663 0.91645 0.99644 1.74694 1.15171 1.14986 0.98883 1.84668 1.43673 1.36467 1.30586 1.23999 0.99245 0.87096 1.00540 1.20562 1.00450 0.99066 0.94666 1.20099 1.00064 0.91209 0.95889 1.20702 0.95687 0.95371 0.94974 1.21833 0.99435 0.96750 1.01717 1.21958 0.97701 1.02129 0.98325 1.21725 0.97353 0.92734 1.02863 1.20233 0.94908 1.00396 0.91531 0.91201 0.92301 0.92620 0.96070 0.95150 0.78068 0.93617 0.93260 0.90506 0.89439 0.89468 0.89269 0.92260 0.92523 0.92186 0.92479 0.92532 0.92488 0.90185 0.90735 0.88863 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.19 37.16 0.34 -1.76 16 2 C 0.13 2.28 2.79 -67.93 -0.19 2.09 16 3 H 0.10 2.05 6.90 -51.93 -0.36 1.69 16 4 C 0.14 3.01 5.52 -4.04 -0.02 2.99 16 5 N -0.73 -19.52 5.43 -59.91 -0.33 -19.85 16 6 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 7 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 8 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 9 N -0.93 -29.32 13.06 55.49 0.72 -28.59 16 10 Si 0.91 23.07 29.55 -169.99 -5.02 18.05 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 N -0.58 -10.86 2.24 -174.86 -0.39 -11.25 16 15 C 0.08 1.30 8.67 59.85 0.52 1.82 16 16 C 0.60 12.16 7.40 -12.11 -0.09 12.07 16 17 O -0.52 -11.63 15.38 5.37 0.08 -11.55 16 18 C 0.00 -0.03 6.86 -82.82 -0.57 -0.60 16 19 N -0.33 -5.63 8.76 33.29 0.29 -5.34 16 20 O 0.12 1.72 11.18 19.20 0.21 1.93 16 21 C -0.04 -0.58 6.65 -35.38 -0.24 -0.82 16 22 C -0.14 -2.23 5.59 -104.92 -0.59 -2.81 16 23 C -0.04 -0.49 4.45 -27.91 -0.12 -0.62 16 24 C -0.07 -0.66 0.77 -154.19 -0.12 -0.78 16 25 C -0.14 -1.22 8.44 37.16 0.31 -0.91 16 26 C -0.14 -1.27 7.72 37.16 0.29 -0.99 16 27 C -0.11 -0.94 4.82 -26.47 -0.13 -1.06 16 28 C -0.03 -0.28 5.66 -27.71 -0.16 -0.44 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.74 7.67 -51.93 -0.40 0.35 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.39 11.23 7.06 -40.82 -0.29 10.94 16 35 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.26 6.54 -51.93 -0.34 0.92 16 38 H 0.09 1.59 5.39 -51.93 -0.28 1.31 16 39 H 0.09 1.35 8.12 -51.93 -0.42 0.93 16 40 H 0.09 1.33 7.73 -51.93 -0.40 0.93 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.54 5.66 -51.93 -0.29 0.25 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 48 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 49 H 0.09 0.63 6.99 -51.93 -0.36 0.27 16 50 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 389.69 15.07 5.87 5.87 Total: -1.00 -34.30 389.69 -7.68 -41.98 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -8.12 Total: 8.16 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.00 Total: 0.57 kcal Atomic # 7 Polarization: -65.33 SS G_CDS: 0.30 Total: -65.03 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.30 Total: -9.61 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.30 -7.68 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496119648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.039 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds