Wall clock time and date at job start Tue Mar 31 2020 18:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47145 * 2 1 4 4 C 1.53004 * 109.46999 * 239.99751 * 2 1 3 5 5 N 1.46500 * 109.47167 * 184.99821 * 4 2 1 6 6 C 1.36938 * 119.99982 * 180.02562 * 5 4 2 7 7 H 1.07997 * 119.99591 * 359.97438 * 6 5 4 8 8 C 1.38817 * 119.99937 * 180.02562 * 6 5 4 9 9 N 1.31614 * 119.99953 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99789 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47169 * 89.99959 * 10 8 6 12 12 H 1.48503 * 109.47120 * 210.00384 * 10 8 6 13 13 H 1.48501 * 109.47235 * 329.99987 * 10 8 6 14 14 N 1.46502 * 109.47191 * 120.00062 * 2 1 3 15 15 C 1.46499 * 119.99893 * 59.99938 * 14 2 1 16 16 C 1.34771 * 120.00155 * 239.99948 * 14 2 1 17 17 O 1.21493 * 120.00169 * 3.04626 * 16 14 2 18 18 C 1.48338 * 120.00115 * 183.05342 * 16 14 2 19 19 N 1.31491 * 127.15333 * 354.88526 * 18 16 14 20 20 O 1.21433 * 111.52680 * 179.97438 * 19 18 16 21 21 C 1.33185 * 111.56916 * 359.94671 * 20 19 18 22 22 C 1.35380 * 106.63214 * 0.09008 * 21 20 19 23 23 C 1.50065 * 124.93402 * 179.79231 * 22 21 20 24 24 C 1.53547 * 108.23284 * 343.89446 * 23 22 21 25 25 C 1.53001 * 109.46388 * 169.20828 * 24 23 22 26 26 C 1.53000 * 109.46402 * 289.18330 * 24 23 22 27 27 C 1.53070 * 109.53093 * 49.18148 * 24 23 22 28 28 C 1.50596 * 129.60485 * 180.09188 * 21 20 19 29 29 H 1.08992 * 109.47344 * 59.99644 * 1 2 3 30 30 H 1.09000 * 109.47145 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46651 * 299.99637 * 1 2 3 32 32 H 1.08994 * 109.47398 * 305.00335 * 4 2 1 33 33 H 1.09003 * 109.46518 * 65.00427 * 4 2 1 34 34 H 0.97004 * 119.99996 * 0.02562 * 5 4 2 35 35 H 0.96997 * 120.00070 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.47314 * 263.96413 * 15 14 2 37 37 H 1.09003 * 109.47477 * 23.96355 * 15 14 2 38 38 H 1.09002 * 109.47302 * 143.95852 * 15 14 2 39 39 H 1.09006 * 109.71220 * 103.57842 * 23 22 21 40 40 H 1.09000 * 109.71207 * 224.16131 * 23 22 21 41 41 H 1.09003 * 109.47038 * 59.99698 * 25 24 23 42 42 H 1.08995 * 109.47517 * 179.97438 * 25 24 23 43 43 H 1.08995 * 109.47278 * 300.00158 * 25 24 23 44 44 H 1.08994 * 109.46909 * 60.00157 * 26 24 23 45 45 H 1.09003 * 109.46876 * 180.02562 * 26 24 23 46 46 H 1.09003 * 109.47151 * 300.00230 * 26 24 23 47 47 H 1.08992 * 109.43303 * 170.08444 * 27 24 23 48 48 H 1.09000 * 109.40749 * 50.25162 * 27 24 23 49 49 H 1.08999 * 109.69045 * 282.98867 * 28 21 20 50 50 H 1.09000 * 109.69501 * 43.58175 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1838 -1.4380 -2.2073 7 1 3.6467 -1.8432 -3.0521 8 6 5.5673 -1.5381 -2.1515 9 7 6.2216 -1.0456 -1.1212 10 14 6.4999 -2.3730 -3.5379 11 1 6.8626 -1.3659 -4.5673 12 1 7.7350 -2.9965 -2.9985 13 1 5.6435 -3.4203 -4.1503 14 7 2.0184 -0.6906 1.1962 15 6 1.6644 -2.0932 1.4280 16 6 2.7932 -0.0357 2.0833 17 8 3.0412 1.1424 1.9199 18 6 3.3434 -0.7532 3.2592 19 7 3.0927 -1.9918 3.6226 20 8 3.6971 -2.2910 4.6324 21 6 4.4387 -1.2782 5.0773 22 6 4.2442 -0.2492 4.2193 23 6 4.8852 1.1024 4.3389 24 6 5.4422 1.2456 5.7626 25 6 6.3304 2.4890 5.8399 26 6 4.2834 1.3847 6.7519 27 6 6.2679 0.0061 6.1161 28 6 5.3403 -1.2048 6.2814 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.6054 -1.7198 -1.2952 33 1 1.7516 -0.1583 -2.1369 34 1 3.9824 -0.4628 -0.4316 35 1 7.1883 -1.1158 -1.0820 36 1 0.7989 -2.1452 2.0884 37 1 1.4250 -2.5695 0.4772 38 1 2.5061 -2.6087 1.8907 39 1 5.6965 1.1899 3.6162 40 1 4.1429 1.8789 4.1540 41 1 5.7422 3.3718 5.5892 42 1 6.7255 2.5911 6.8505 43 1 7.1558 2.3903 5.1349 44 1 3.6503 0.4992 6.6967 45 1 4.6787 1.4868 7.7625 46 1 3.6956 2.2677 6.5011 47 1 6.8045 0.1817 7.0484 48 1 6.9838 -0.1918 5.3183 49 1 4.7397 -1.0871 7.1833 50 1 5.9346 -2.1159 6.3513 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496119648.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:27 Heat of formation + Delta-G solvation = 15.006875 kcal Electronic energy + Delta-G solvation = -30866.010764 eV Core-core repulsion = 26896.040872 eV Total energy + Delta-G solvation = -3969.969893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.17774 -41.14059 -39.95976 -38.01224 -36.00479 -35.16060 -33.90554 -33.40684 -31.93475 -31.18559 -28.42621 -28.14081 -27.95459 -27.47617 -25.90011 -24.66587 -24.42735 -22.78955 -22.12752 -20.46218 -19.39252 -19.17185 -18.87848 -18.28763 -17.89054 -17.24592 -16.71369 -16.54211 -15.91404 -15.62278 -15.42078 -15.34228 -15.24836 -15.11028 -14.43169 -14.35172 -14.26963 -14.06602 -13.89183 -13.77393 -13.43325 -13.35246 -13.11450 -13.04946 -12.83606 -12.78006 -12.65484 -12.58824 -12.53072 -12.20446 -12.11002 -11.87787 -11.80623 -11.65674 -11.57747 -11.45270 -11.20712 -11.14968 -11.00296 -10.10116 -9.75945 -9.06912 -7.98595 -5.29676 0.03483 0.64643 1.41355 1.44553 1.52753 1.64363 1.97012 2.06918 2.50999 2.80173 3.34346 3.39747 3.55749 3.70816 3.81377 3.93563 3.94065 4.00984 4.12055 4.15042 4.18067 4.22648 4.36484 4.40492 4.45643 4.56726 4.64350 4.72749 4.74817 4.77736 4.79122 4.86086 4.90213 4.90395 4.92584 5.00392 5.05276 5.05888 5.13865 5.16185 5.22062 5.23307 5.37226 5.41752 5.45788 5.50671 5.55551 6.14840 6.20712 6.81560 7.04438 7.26405 8.01137 8.25046 9.24787 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010878 B = 0.003946 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.501535 B = 7094.602842 C = 8212.672547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.128 3.872 3 H 0.075 0.925 4 C 0.142 3.858 5 N -0.744 5.744 6 C -0.246 4.246 7 H 0.081 0.919 8 C -0.077 4.077 9 N -0.971 5.971 10 Si 0.978 3.022 11 H -0.286 1.286 12 H -0.296 1.296 13 H -0.265 1.265 14 N -0.581 5.581 15 C 0.082 3.918 16 C 0.588 3.412 17 O -0.560 6.560 18 C -0.037 4.037 19 N -0.341 5.341 20 O 0.127 5.873 21 C -0.021 4.021 22 C -0.170 4.170 23 C -0.032 4.032 24 C -0.062 4.062 25 C -0.139 4.139 26 C -0.140 4.140 27 C -0.108 4.108 28 C -0.032 4.032 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.368 0.632 35 H 0.249 0.751 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.084 0.916 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.118 0.882 48 H 0.057 0.943 49 H 0.126 0.874 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.152 0.814 20.654 21.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.093 0.907 4 C 0.015 3.985 5 N -0.387 5.387 6 C -0.378 4.378 7 H 0.099 0.901 8 C -0.269 4.269 9 N -0.622 5.622 10 Si 0.807 3.193 11 H -0.213 1.213 12 H -0.223 1.223 13 H -0.190 1.190 14 N -0.312 5.312 15 C -0.061 4.061 16 C 0.374 3.626 17 O -0.438 6.438 18 C -0.193 4.193 19 N -0.045 5.045 20 O 0.055 5.945 21 C -0.086 4.086 22 C -0.175 4.175 23 C -0.070 4.070 24 C -0.062 4.062 25 C -0.196 4.196 26 C -0.197 4.197 27 C -0.145 4.145 28 C -0.069 4.069 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.200 0.800 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.103 0.897 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.137 0.863 48 H 0.076 0.924 49 H 0.144 0.856 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.859 0.387 19.801 20.959 hybrid contribution 1.173 0.446 -1.143 1.697 sum -5.686 0.833 18.658 19.523 Atomic orbital electron populations 1.21969 0.90748 1.03732 1.03450 1.21465 0.96508 0.96509 0.83004 0.90694 1.21235 0.84140 0.97933 0.95240 1.42536 1.02000 1.69991 1.24125 1.19679 0.90022 1.28584 0.99513 0.90138 1.25656 0.97545 1.03050 1.00688 1.69890 1.06897 1.52920 1.32491 0.85074 0.77829 0.78147 0.78298 1.21329 1.22283 1.18982 1.47678 1.48601 1.13423 1.21488 1.22033 1.01601 0.79933 1.02492 1.17272 0.78182 0.85669 0.81434 1.90709 1.60635 1.16310 1.76130 1.22990 1.03532 0.92617 1.00133 1.74657 1.15891 1.14301 0.99644 1.84630 1.43358 1.36760 1.29775 1.24829 0.97803 0.85265 1.00687 1.20844 1.01043 1.00522 0.95109 1.20069 0.98423 0.90064 0.98420 1.20703 0.96474 0.96833 0.92199 1.21833 0.98789 0.95893 1.03070 1.21929 0.96971 1.01379 0.99401 1.21779 0.96883 0.91724 1.04112 1.20620 0.94603 1.01502 0.90217 0.89256 0.90609 0.91934 0.94580 0.94268 0.80021 0.94221 0.90534 0.90117 0.91105 0.92527 0.91549 0.93063 0.89705 0.93222 0.93084 0.89465 0.93578 0.86349 0.92430 0.85595 0.86621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.64 9.19 71.98 0.66 -2.98 16 2 C 0.13 4.73 2.79 44.99 0.13 4.86 16 3 H 0.07 3.18 6.90 -2.39 -0.02 3.16 16 4 C 0.14 5.96 5.52 86.38 0.48 6.43 16 5 N -0.74 -40.96 5.43 -343.45 -1.87 -42.82 16 6 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 7 H 0.08 4.45 7.83 -2.91 -0.02 4.42 16 8 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 9 N -0.97 -63.47 13.06 21.65 0.28 -63.19 16 10 Si 0.98 48.03 29.55 68.60 2.03 50.06 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 14 N -0.58 -22.45 2.24 -825.44 -1.85 -24.31 16 15 C 0.08 2.72 8.67 127.77 1.11 3.83 16 16 C 0.59 25.44 7.40 86.93 0.64 26.09 16 17 O -0.56 -27.09 15.38 -3.69 -0.06 -27.14 16 18 C -0.04 -1.42 6.86 42.55 0.29 -1.13 16 19 N -0.34 -11.82 8.76 -48.95 -0.43 -12.24 16 20 O 0.13 3.69 11.18 78.73 0.88 4.57 16 21 C -0.02 -0.54 6.65 24.99 0.17 -0.37 16 22 C -0.17 -5.55 5.59 -20.06 -0.11 -5.66 16 23 C -0.03 -0.97 4.45 29.83 0.13 -0.83 16 24 C -0.06 -1.17 0.77 -51.97 -0.04 -1.21 16 25 C -0.14 -2.32 8.44 71.98 0.61 -1.71 16 26 C -0.14 -2.21 7.72 71.98 0.56 -1.65 16 27 C -0.11 -1.58 4.82 30.76 0.15 -1.43 16 28 C -0.03 -0.45 5.66 29.96 0.17 -0.28 16 29 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 1.72 7.67 -2.39 -0.02 1.70 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.44 6.87 -2.39 -0.02 1.42 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.37 22.58 7.06 -92.71 -0.65 21.92 16 35 H 0.25 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.08 2.58 6.54 -2.39 -0.02 2.56 16 38 H 0.07 2.64 5.39 -2.39 -0.01 2.63 16 39 H 0.06 1.99 8.12 -2.38 -0.02 1.97 16 40 H 0.07 2.23 7.73 -2.39 -0.02 2.21 16 41 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 0.87 5.66 -2.39 -0.01 0.85 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.12 0.92 8.11 -2.39 -0.02 0.90 16 48 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 49 H 0.13 1.09 6.99 -2.39 -0.02 1.07 16 50 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -79.35 389.69 5.52 -73.83 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: 0.29 Total: 35.13 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 6.24 Total: 6.12 kcal Atomic # 7 Polarization: -138.70 SS G_CDS: -3.86 Total: -142.56 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.82 Total: -22.57 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -79.35 5.52 -73.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496119648.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.834 kcal (2) G-P(sol) polarization free energy of solvation -79.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds