Wall clock time and date at job start Tue Mar 31 2020 18:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08991 * 109.47524 * 2 1 4 4 C 1.53012 * 109.46906 * 119.99675 * 2 1 3 5 5 N 1.46501 * 109.46823 * 174.99862 * 4 2 1 6 6 C 1.36939 * 119.99371 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00265 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99481 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99898 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00385 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47283 * 89.99860 * 10 8 6 12 12 H 1.48499 * 109.47275 * 210.00118 * 10 8 6 13 13 H 1.48505 * 109.46706 * 330.00123 * 10 8 6 14 14 N 1.46495 * 109.47496 * 239.99591 * 2 1 3 15 15 C 1.46503 * 119.99871 * 300.00335 * 14 2 1 16 16 C 1.34776 * 120.00208 * 120.00200 * 14 2 1 17 17 O 1.21494 * 119.99453 * 5.36918 * 16 14 2 18 18 C 1.48327 * 119.99969 * 185.37283 * 16 14 2 19 19 N 1.31498 * 127.15750 * 5.90219 * 18 16 14 20 20 O 1.21435 * 111.52751 * 179.97438 * 19 18 16 21 21 C 1.33191 * 111.56761 * 359.96047 * 20 19 18 22 22 C 1.35373 * 106.63584 * 359.82944 * 21 20 19 23 23 C 1.50069 * 124.93602 * 179.43452 * 22 21 20 24 24 C 1.53543 * 108.29101 * 344.45278 * 23 22 21 25 25 C 1.53002 * 109.46823 * 288.95996 * 24 23 22 26 26 C 1.53005 * 109.46772 * 168.98176 * 24 23 22 27 27 C 1.53108 * 109.50872 * 48.97008 * 24 23 22 28 28 C 1.50593 * 129.60169 * 180.17996 * 21 20 19 29 29 H 1.09001 * 109.47631 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47510 * 300.00447 * 1 2 3 31 31 H 1.09003 * 109.47536 * 60.00361 * 1 2 3 32 32 H 1.09003 * 109.46844 * 295.00240 * 4 2 1 33 33 H 1.09002 * 109.46589 * 55.00021 * 4 2 1 34 34 H 0.96991 * 120.00511 * 0.02562 * 5 4 2 35 35 H 0.96995 * 120.00207 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47161 * 95.36978 * 15 14 2 37 37 H 1.09001 * 109.47177 * 215.36519 * 15 14 2 38 38 H 1.09000 * 109.47124 * 335.36681 * 15 14 2 39 39 H 1.08993 * 109.86415 * 224.64324 * 23 22 21 40 40 H 1.09002 * 109.53414 * 104.06689 * 23 22 21 41 41 H 1.08996 * 109.47552 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.46591 * 300.04158 * 25 24 23 43 43 H 1.09002 * 109.46528 * 60.03688 * 25 24 23 44 44 H 1.09005 * 109.47025 * 299.96536 * 26 24 23 45 45 H 1.08995 * 109.46719 * 59.96015 * 26 24 23 46 46 H 1.08997 * 109.47238 * 179.97438 * 26 24 23 47 47 H 1.09007 * 109.43200 * 170.05576 * 27 24 23 48 48 H 1.09007 * 109.38453 * 50.19436 * 27 24 23 49 49 H 1.08997 * 109.69985 * 282.92548 * 28 21 20 50 50 H 1.09006 * 109.69610 * 43.51801 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.4999 -0.8264 1.1907 6 6 4.1836 -1.4388 2.2069 7 1 3.6465 -1.8439 3.0518 8 6 5.5671 -1.5380 2.1516 9 7 6.2242 -2.1271 3.1281 10 14 6.4963 -0.8355 0.6913 11 1 6.8570 0.5783 0.9678 12 1 7.7324 -1.6264 0.4641 13 1 5.6380 -0.8997 -0.5189 14 7 2.0183 -0.6907 -1.1961 15 6 1.6644 -2.0933 -1.4278 16 6 2.7932 -0.0358 -2.0832 17 8 3.1673 1.0952 -1.8443 18 6 3.1892 -0.6957 -3.3512 19 7 2.7817 -1.8625 -3.8003 20 8 3.2869 -2.1287 -4.8720 21 6 4.1059 -1.1612 -5.2809 22 6 4.0763 -0.1999 -4.3283 23 6 4.8642 1.0766 -4.3707 24 6 5.9648 0.9285 -5.4311 25 6 7.0301 -0.0474 -4.9275 26 6 6.6065 2.2924 -5.6939 27 6 5.3552 0.3929 -6.7294 28 6 4.9305 -1.0689 -6.5377 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.7515 -0.1582 2.1371 33 1 1.6052 -1.7198 1.2953 34 1 3.9824 -0.4623 0.4321 35 1 7.1909 -2.1961 3.0897 36 1 0.7917 -2.1450 -2.0788 37 1 2.5017 -2.6058 -1.9014 38 1 1.4364 -2.5726 -0.4758 39 1 5.3153 1.2659 -3.3967 40 1 4.2054 1.9029 -4.6376 41 1 7.8117 -0.1522 -5.6799 42 1 7.4641 0.3339 -4.0031 43 1 6.5732 -1.0192 -4.7406 44 1 5.8478 2.9878 -6.0530 45 1 7.0405 2.6738 -4.7697 46 1 7.3881 2.1873 -6.4463 47 1 6.0935 0.4542 -7.5290 48 1 4.4837 0.9918 -6.9940 49 1 5.8149 -1.6990 -6.4439 50 1 4.3361 -1.3938 -7.3917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496119693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:31 Heat of formation + Delta-G solvation = 37.886846 kcal Electronic energy + Delta-G solvation = -31127.196462 eV Core-core repulsion = 27158.218720 eV Total energy + Delta-G solvation = -3968.977743 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.13507 -39.83642 -39.22456 -36.60110 -34.41789 -33.85431 -33.06356 -31.89307 -30.65981 -30.23564 -27.57044 -27.44208 -26.77007 -25.98098 -24.71853 -23.90694 -22.14057 -21.83883 -20.88329 -19.28613 -18.41944 -17.92726 -17.54777 -17.24013 -16.70296 -15.92169 -15.33178 -15.15645 -14.78509 -14.63474 -14.61258 -14.04576 -13.82888 -13.57146 -13.50919 -13.34644 -12.97819 -12.84448 -12.60096 -12.41685 -12.38774 -12.34900 -12.13825 -12.02614 -11.98080 -11.87751 -11.80685 -11.22992 -10.96263 -10.92535 -10.87791 -10.81010 -10.63655 -10.58045 -10.20690 -10.10479 -9.94889 -9.57940 -9.17212 -8.88626 -8.46291 -7.20710 -5.75630 -3.10027 1.11681 1.64491 2.75684 2.98286 3.28511 3.40560 3.46096 3.48731 3.93329 4.25201 4.34661 4.43001 4.62261 4.69508 4.75937 4.84615 4.97617 5.03423 5.06095 5.25644 5.31236 5.32537 5.38147 5.45001 5.47431 5.48534 5.50104 5.54003 5.56490 5.61627 5.69063 5.71754 5.76442 5.82051 5.87424 5.88203 5.91694 6.01327 6.07917 6.08979 6.15695 6.20664 6.22418 6.38851 6.59047 6.80821 7.44478 7.94181 8.00400 8.22623 8.43792 9.23408 9.96552 10.16818 11.42711 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.004717 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.278944 B = 5934.133993 C = 7281.912490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.122 3.878 3 H 0.103 0.897 4 C 0.148 3.852 5 N -0.752 5.752 6 C -0.242 4.242 7 H 0.091 0.909 8 C 0.007 3.993 9 N -0.934 5.934 10 Si 0.880 3.120 11 H -0.282 1.282 12 H -0.291 1.291 13 H -0.280 1.280 14 N -0.583 5.583 15 C 0.083 3.917 16 C 0.595 3.405 17 O -0.524 6.524 18 C -0.008 4.008 19 N -0.331 5.331 20 O 0.121 5.879 21 C -0.042 4.042 22 C -0.147 4.147 23 C -0.035 4.035 24 C -0.069 4.069 25 C -0.149 4.149 26 C -0.140 4.140 27 C -0.106 4.106 28 C -0.035 4.035 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.030 0.970 34 H 0.363 0.637 35 H 0.259 0.741 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.096 0.904 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 4.419 -23.447 24.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.019 3.981 3 H 0.121 0.879 4 C 0.020 3.980 5 N -0.398 5.398 6 C -0.372 4.372 7 H 0.109 0.891 8 C -0.188 4.188 9 N -0.582 5.582 10 Si 0.711 3.289 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.207 1.207 14 N -0.315 5.315 15 C -0.060 4.060 16 C 0.381 3.619 17 O -0.399 6.399 18 C -0.166 4.166 19 N -0.035 5.035 20 O 0.049 5.951 21 C -0.106 4.106 22 C -0.152 4.152 23 C -0.072 4.072 24 C -0.069 4.069 25 C -0.206 4.206 26 C -0.197 4.197 27 C -0.144 4.144 28 C -0.073 4.073 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.196 0.804 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.114 0.886 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.579 3.999 -22.544 23.823 hybrid contribution 1.147 0.783 -0.906 1.658 sum -5.432 4.782 -23.450 24.542 Atomic orbital electron populations 1.22044 0.94403 1.02490 1.02292 1.21570 0.93927 0.98452 0.84164 0.87936 1.21001 0.85810 0.97478 0.93700 1.42661 1.01263 1.71332 1.24572 1.19051 0.89856 1.29363 0.98920 0.89127 1.24613 0.96153 1.00586 0.97478 1.69697 1.07264 1.48652 1.32552 0.86596 0.79697 0.79084 0.83549 1.20893 1.21749 1.20658 1.47622 1.49211 1.12796 1.21891 1.21895 1.01103 0.80821 1.02192 1.16913 0.78617 0.85146 0.81240 1.90767 1.54438 1.18134 1.76554 1.23003 1.01279 0.93362 0.98965 1.74747 1.17195 1.15495 0.96035 1.84679 1.43869 1.39429 1.27107 1.24045 0.97633 0.88904 1.00005 1.20607 1.01139 1.00136 0.93346 1.20096 0.94899 0.91935 1.00312 1.20729 0.95239 0.96380 0.94508 1.21995 0.97971 0.99237 1.01375 1.21833 1.00455 0.95376 1.02029 1.21716 1.01277 0.93805 0.97578 1.20271 0.97480 0.99022 0.90484 0.92073 0.90935 0.92577 0.94194 0.95205 0.80362 0.93106 0.92710 0.90510 0.90059 0.89232 0.89804 0.92248 0.92216 0.92401 0.92406 0.92104 0.92328 0.90006 0.91022 0.88559 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.19 37.15 0.34 -1.61 16 2 C 0.12 2.06 2.79 -67.93 -0.19 1.87 16 3 H 0.10 1.90 6.91 -51.93 -0.36 1.54 16 4 C 0.15 2.96 5.52 -4.04 -0.02 2.94 16 5 N -0.75 -19.10 5.24 -59.90 -0.31 -19.42 16 6 C -0.24 -7.14 10.47 -15.06 -0.16 -7.30 16 7 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 8 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 9 N -0.93 -30.20 13.97 55.49 0.78 -29.42 16 10 Si 0.88 23.92 27.74 -169.99 -4.71 19.20 16 11 H -0.28 -7.67 7.11 56.52 0.40 -7.27 16 12 H -0.29 -7.84 7.11 56.52 0.40 -7.44 16 13 H -0.28 -7.52 6.52 56.52 0.37 -7.16 16 14 N -0.58 -10.29 2.24 -174.87 -0.39 -10.68 16 15 C 0.08 1.29 8.37 59.85 0.50 1.79 16 16 C 0.60 11.38 7.40 -12.11 -0.09 11.29 16 17 O -0.52 -11.04 15.53 5.37 0.08 -10.96 16 18 C -0.01 -0.14 6.78 -82.82 -0.56 -0.70 16 19 N -0.33 -5.15 9.02 33.29 0.30 -4.85 16 20 O 0.12 1.62 11.18 19.18 0.21 1.83 16 21 C -0.04 -0.49 6.64 -35.38 -0.23 -0.73 16 22 C -0.15 -2.13 5.61 -104.91 -0.59 -2.72 16 23 C -0.04 -0.45 4.39 -27.91 -0.12 -0.57 16 24 C -0.07 -0.65 0.77 -154.17 -0.12 -0.76 16 25 C -0.15 -1.53 7.73 37.16 0.29 -1.24 16 26 C -0.14 -1.12 8.44 37.16 0.31 -0.81 16 27 C -0.11 -0.75 4.82 -26.45 -0.13 -0.88 16 28 C -0.03 -0.26 5.66 -27.71 -0.16 -0.42 16 29 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.58 6.86 -51.93 -0.36 0.23 16 34 H 0.36 9.52 4.93 -40.82 -0.20 9.32 16 35 H 0.26 7.99 8.31 -40.82 -0.34 7.65 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.30 5.97 -51.93 -0.31 0.99 16 38 H 0.08 1.24 6.54 -51.93 -0.34 0.90 16 39 H 0.09 1.39 7.92 -51.93 -0.41 0.98 16 40 H 0.08 1.02 8.12 -51.93 -0.42 0.60 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.66 5.67 -51.93 -0.29 0.36 16 44 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.42 8.11 -51.92 -0.42 0.00 16 48 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 49 H 0.10 0.64 6.99 -51.93 -0.36 0.28 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -35.25 387.34 -7.35 -42.60 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.12 Total: 5.56 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -1.02 Total: 0.29 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: 0.37 Total: -64.37 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.30 Total: -9.13 kcal Atomic # 14 Polarization: 23.92 SS G_CDS: -4.71 Total: 19.20 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.25 -7.35 -42.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496119693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.491 kcal (2) G-P(sol) polarization free energy of solvation -35.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds