Wall clock time and date at job start Tue Mar 31 2020 18:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08991 * 109.47524 * 2 1 4 4 C 1.53012 * 109.46906 * 119.99675 * 2 1 3 5 5 N 1.46501 * 109.46823 * 174.99862 * 4 2 1 6 6 C 1.36939 * 119.99371 * 180.02562 * 5 4 2 7 7 H 1.07999 * 120.00265 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99481 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99898 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 120.00385 * 0.02562 * 8 6 5 11 11 H 1.48499 * 109.47283 * 89.99860 * 10 8 6 12 12 H 1.48499 * 109.47275 * 210.00118 * 10 8 6 13 13 H 1.48505 * 109.46706 * 330.00123 * 10 8 6 14 14 N 1.46495 * 109.47496 * 239.99591 * 2 1 3 15 15 C 1.46503 * 119.99871 * 300.00335 * 14 2 1 16 16 C 1.34776 * 120.00208 * 120.00200 * 14 2 1 17 17 O 1.21494 * 119.99453 * 5.36918 * 16 14 2 18 18 C 1.48327 * 119.99969 * 185.37283 * 16 14 2 19 19 N 1.31498 * 127.15750 * 5.90219 * 18 16 14 20 20 O 1.21435 * 111.52751 * 179.97438 * 19 18 16 21 21 C 1.33191 * 111.56761 * 359.96047 * 20 19 18 22 22 C 1.35373 * 106.63584 * 359.82944 * 21 20 19 23 23 C 1.50069 * 124.93602 * 179.43452 * 22 21 20 24 24 C 1.53543 * 108.29101 * 344.45278 * 23 22 21 25 25 C 1.53002 * 109.46823 * 288.95996 * 24 23 22 26 26 C 1.53005 * 109.46772 * 168.98176 * 24 23 22 27 27 C 1.53108 * 109.50872 * 48.97008 * 24 23 22 28 28 C 1.50593 * 129.60169 * 180.17996 * 21 20 19 29 29 H 1.09001 * 109.47631 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47510 * 300.00447 * 1 2 3 31 31 H 1.09003 * 109.47536 * 60.00361 * 1 2 3 32 32 H 1.09003 * 109.46844 * 295.00240 * 4 2 1 33 33 H 1.09002 * 109.46589 * 55.00021 * 4 2 1 34 34 H 0.96991 * 120.00511 * 0.02562 * 5 4 2 35 35 H 0.96995 * 120.00207 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.47161 * 95.36978 * 15 14 2 37 37 H 1.09001 * 109.47177 * 215.36519 * 15 14 2 38 38 H 1.09000 * 109.47124 * 335.36681 * 15 14 2 39 39 H 1.08993 * 109.86415 * 224.64324 * 23 22 21 40 40 H 1.09002 * 109.53414 * 104.06689 * 23 22 21 41 41 H 1.08996 * 109.47552 * 180.02562 * 25 24 23 42 42 H 1.09003 * 109.46591 * 300.04158 * 25 24 23 43 43 H 1.09002 * 109.46528 * 60.03688 * 25 24 23 44 44 H 1.09005 * 109.47025 * 299.96536 * 26 24 23 45 45 H 1.08995 * 109.46719 * 59.96015 * 26 24 23 46 46 H 1.08997 * 109.47238 * 179.97438 * 26 24 23 47 47 H 1.09007 * 109.43200 * 170.05576 * 27 24 23 48 48 H 1.09007 * 109.38453 * 50.19436 * 27 24 23 49 49 H 1.08997 * 109.69985 * 282.92548 * 28 21 20 50 50 H 1.09006 * 109.69610 * 43.51801 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.4999 -0.8264 1.1907 6 6 4.1836 -1.4388 2.2069 7 1 3.6465 -1.8439 3.0518 8 6 5.5671 -1.5380 2.1516 9 7 6.2242 -2.1271 3.1281 10 14 6.4963 -0.8355 0.6913 11 1 6.8570 0.5783 0.9678 12 1 7.7324 -1.6264 0.4641 13 1 5.6380 -0.8997 -0.5189 14 7 2.0183 -0.6907 -1.1961 15 6 1.6644 -2.0933 -1.4278 16 6 2.7932 -0.0358 -2.0832 17 8 3.1673 1.0952 -1.8443 18 6 3.1892 -0.6957 -3.3512 19 7 2.7817 -1.8625 -3.8003 20 8 3.2869 -2.1287 -4.8720 21 6 4.1059 -1.1612 -5.2809 22 6 4.0763 -0.1999 -4.3283 23 6 4.8642 1.0766 -4.3707 24 6 5.9648 0.9285 -5.4311 25 6 7.0301 -0.0474 -4.9275 26 6 6.6065 2.2924 -5.6939 27 6 5.3552 0.3929 -6.7294 28 6 4.9305 -1.0689 -6.5377 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.7515 -0.1582 2.1371 33 1 1.6052 -1.7198 1.2953 34 1 3.9824 -0.4623 0.4321 35 1 7.1909 -2.1961 3.0897 36 1 0.7917 -2.1450 -2.0788 37 1 2.5017 -2.6058 -1.9014 38 1 1.4364 -2.5726 -0.4758 39 1 5.3153 1.2659 -3.3967 40 1 4.2054 1.9029 -4.6376 41 1 7.8117 -0.1522 -5.6799 42 1 7.4641 0.3339 -4.0031 43 1 6.5732 -1.0192 -4.7406 44 1 5.8478 2.9878 -6.0530 45 1 7.0405 2.6738 -4.7697 46 1 7.3881 2.1873 -6.4463 47 1 6.0935 0.4542 -7.5290 48 1 4.4837 0.9918 -6.9940 49 1 5.8149 -1.6990 -6.4439 50 1 4.3361 -1.3938 -7.3917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496119693.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:30 Heat of formation + Delta-G solvation = 15.827147 kcal Electronic energy + Delta-G solvation = -31128.153043 eV Core-core repulsion = 27158.218720 eV Total energy + Delta-G solvation = -3969.934323 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.25309 -41.24896 -40.01681 -38.13523 -36.15437 -35.22383 -33.97466 -33.60503 -32.30400 -31.25900 -28.50024 -28.23004 -28.02010 -27.70662 -25.97108 -24.65503 -24.10921 -22.85679 -22.24560 -20.65129 -19.68836 -19.35726 -19.03479 -18.33741 -17.93869 -17.27687 -16.77251 -16.68643 -16.05760 -15.81805 -15.59678 -15.40975 -15.19738 -14.93390 -14.57212 -14.37316 -14.31775 -14.20095 -14.09954 -13.89886 -13.72069 -13.50396 -13.22097 -13.11601 -13.02612 -12.87589 -12.73099 -12.57238 -12.55026 -12.38207 -12.22442 -11.96102 -11.88922 -11.72839 -11.64557 -11.50660 -11.28431 -11.23213 -11.11619 -10.16330 -9.85047 -9.40131 -8.14977 -5.45484 -0.05194 0.56797 1.18807 1.22050 1.27874 1.57921 1.89135 1.94475 2.32132 2.71174 3.17047 3.31091 3.47603 3.51964 3.73834 3.81001 3.86945 3.93042 4.05420 4.09442 4.11230 4.15723 4.25369 4.34200 4.41189 4.54417 4.56097 4.67473 4.71715 4.73256 4.75319 4.79825 4.82020 4.86041 4.87056 4.95550 5.00215 5.00946 5.08663 5.09456 5.17251 5.20330 5.32384 5.40829 5.42168 5.47240 5.65321 6.05961 6.10433 6.71669 6.95146 6.95880 7.72822 7.90314 9.06696 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010807 B = 0.004717 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.278944 B = 5934.133993 C = 7281.912490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.125 3.875 3 H 0.083 0.917 4 C 0.143 3.857 5 N -0.759 5.759 6 C -0.227 4.227 7 H 0.071 0.929 8 C -0.049 4.049 9 N -0.974 5.974 10 Si 0.940 3.060 11 H -0.283 1.283 12 H -0.285 1.285 13 H -0.283 1.283 14 N -0.586 5.586 15 C 0.086 3.914 16 C 0.584 3.416 17 O -0.558 6.558 18 C -0.043 4.043 19 N -0.339 5.339 20 O 0.132 5.868 21 C -0.018 4.018 22 C -0.173 4.173 23 C -0.033 4.033 24 C -0.065 4.065 25 C -0.149 4.149 26 C -0.138 4.138 27 C -0.101 4.101 28 C -0.035 4.035 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.358 0.642 35 H 0.259 0.741 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.032 0.968 43 H 0.044 0.956 44 H 0.064 0.936 45 H 0.041 0.959 46 H 0.081 0.919 47 H 0.116 0.884 48 H 0.076 0.924 49 H 0.113 0.887 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.538 4.202 -27.091 28.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.023 3.977 3 H 0.101 0.899 4 C 0.017 3.983 5 N -0.404 5.404 6 C -0.358 4.358 7 H 0.089 0.911 8 C -0.242 4.242 9 N -0.625 5.625 10 Si 0.770 3.230 11 H -0.210 1.210 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.317 5.317 15 C -0.056 4.056 16 C 0.371 3.629 17 O -0.436 6.436 18 C -0.199 4.199 19 N -0.042 5.042 20 O 0.058 5.942 21 C -0.083 4.083 22 C -0.179 4.179 23 C -0.071 4.071 24 C -0.065 4.065 25 C -0.206 4.206 26 C -0.195 4.195 27 C -0.138 4.138 28 C -0.073 4.073 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.191 0.809 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.100 0.900 47 H 0.134 0.866 48 H 0.095 0.905 49 H 0.131 0.869 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.223 3.777 -26.178 27.418 hybrid contribution 1.254 0.819 0.252 1.519 sum -5.969 4.597 -25.926 26.998 Atomic orbital electron populations 1.21973 0.90500 1.03884 1.03625 1.21542 0.96757 0.96769 0.82671 0.89889 1.21259 0.82738 0.98613 0.95727 1.42768 1.03541 1.70814 1.23316 1.19106 0.90000 1.27813 0.98855 0.91122 1.25211 0.97181 1.01936 0.99856 1.69817 1.07502 1.50726 1.34442 0.85643 0.78549 0.78227 0.80561 1.20993 1.21098 1.20978 1.47795 1.48774 1.13510 1.21644 1.21946 1.01442 0.79532 1.02676 1.17318 0.78353 0.85052 0.82165 1.90728 1.55751 1.19566 1.77531 1.22988 1.03234 0.94522 0.99143 1.74710 1.17743 1.14926 0.96793 1.84646 1.43673 1.39623 1.26254 1.24842 0.96006 0.86895 1.00514 1.20878 1.01681 1.01552 0.93770 1.20089 0.95783 0.91524 0.99682 1.20744 0.93851 0.97191 0.94696 1.22015 0.98883 0.98547 1.01174 1.21825 1.01164 0.94618 1.01860 1.21754 1.02223 0.93199 0.96619 1.20654 0.97712 0.99824 0.89089 0.90603 0.89131 0.91729 0.93405 0.93946 0.80923 0.93167 0.90185 0.92004 0.89780 0.93240 0.89937 0.89313 0.94865 0.93646 0.91660 0.93931 0.89992 0.86581 0.90546 0.86885 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.19 71.98 0.66 -2.63 16 2 C 0.13 4.21 2.79 44.99 0.13 4.34 16 3 H 0.08 3.14 6.91 -2.39 -0.02 3.12 16 4 C 0.14 5.66 5.52 86.38 0.48 6.14 16 5 N -0.76 -38.99 5.24 -343.42 -1.80 -40.79 16 6 C -0.23 -13.60 10.47 84.03 0.88 -12.72 16 7 H 0.07 4.47 8.06 -2.91 -0.02 4.45 16 8 C -0.05 -3.09 5.50 84.86 0.47 -2.63 16 9 N -0.97 -64.32 13.97 21.65 0.30 -64.02 16 10 Si 0.94 51.16 27.74 68.60 1.90 53.06 16 11 H -0.28 -15.32 7.11 99.48 0.71 -14.61 16 12 H -0.28 -15.08 7.11 99.48 0.71 -14.37 16 13 H -0.28 -15.37 6.52 99.48 0.65 -14.72 16 14 N -0.59 -20.69 2.24 -825.47 -1.85 -22.55 16 15 C 0.09 2.62 8.37 127.77 1.07 3.69 16 16 C 0.58 23.01 7.40 86.93 0.64 23.65 16 17 O -0.56 -24.72 15.53 -3.70 -0.06 -24.78 16 18 C -0.04 -1.48 6.78 42.55 0.29 -1.19 16 19 N -0.34 -10.41 9.02 -48.94 -0.44 -10.85 16 20 O 0.13 3.33 11.18 78.67 0.88 4.21 16 21 C -0.02 -0.39 6.64 24.99 0.17 -0.23 16 22 C -0.17 -5.00 5.61 -20.05 -0.11 -5.11 16 23 C -0.03 -0.88 4.39 29.83 0.13 -0.75 16 24 C -0.06 -1.11 0.77 -51.96 -0.04 -1.15 16 25 C -0.15 -2.86 7.73 71.98 0.56 -2.30 16 26 C -0.14 -1.97 8.44 71.98 0.61 -1.36 16 27 C -0.10 -1.01 4.82 30.77 0.15 -0.86 16 28 C -0.04 -0.38 5.66 29.96 0.17 -0.21 16 29 H 0.07 1.56 7.67 -2.39 -0.02 1.54 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.04 1.60 6.86 -2.39 -0.02 1.59 16 34 H 0.36 19.13 4.93 -92.72 -0.46 18.67 16 35 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 36 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 2.09 5.97 -2.39 -0.01 2.08 16 38 H 0.08 2.47 6.54 -2.39 -0.02 2.45 16 39 H 0.05 1.67 7.92 -2.39 -0.02 1.65 16 40 H 0.08 2.10 8.12 -2.39 -0.02 2.08 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.04 0.97 5.67 -2.39 -0.01 0.95 16 44 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.12 0.49 8.11 -2.38 -0.02 0.47 16 48 H 0.08 0.75 8.12 -2.38 -0.02 0.74 16 49 H 0.11 0.97 6.99 -2.39 -0.02 0.96 16 50 H 0.13 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -80.19 387.34 5.60 -74.59 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.43 Total: 24.45 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 6.24 Total: 6.68 kcal Atomic # 7 Polarization: -134.42 SS G_CDS: -3.79 Total: -138.21 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: 0.82 Total: -20.57 kcal Atomic # 14 Polarization: 51.16 SS G_CDS: 1.90 Total: 53.06 kcal Total: -80.19 5.60 -74.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496119693.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.419 kcal (2) G-P(sol) polarization free energy of solvation -80.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds