Wall clock time and date at job start Tue Mar 31 2020 18:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47310 * 2 1 4 4 C 1.53005 * 109.46905 * 240.00472 * 2 1 3 5 5 N 1.46494 * 109.47060 * 184.99772 * 4 2 1 6 6 C 1.34776 * 120.00230 * 179.97438 * 5 4 2 7 7 O 1.21501 * 119.99562 * 0.02562 * 6 5 4 8 8 C 1.48331 * 120.00498 * 180.02562 * 6 5 4 9 9 N 1.31492 * 127.15028 * 0.02562 * 8 6 5 10 10 O 1.21437 * 111.52161 * 179.97438 * 9 8 6 11 11 C 1.33184 * 111.57038 * 359.96391 * 10 9 8 12 12 C 1.35376 * 106.63549 * 359.80514 * 11 10 9 13 13 C 1.50065 * 124.93406 * 179.41608 * 12 11 10 14 14 C 1.53553 * 108.29845 * 344.49319 * 13 12 11 15 15 C 1.53006 * 109.46247 * 288.94685 * 14 13 12 16 16 C 1.52999 * 109.46544 * 168.97078 * 14 13 12 17 17 C 1.53104 * 109.50586 * 48.95492 * 14 13 12 18 18 C 1.50601 * 129.60108 * 180.19006 * 11 10 9 19 19 N 1.46499 * 109.47067 * 120.00674 * 2 1 3 20 20 C 1.46500 * 120.00319 * 60.00214 * 19 2 1 21 21 C 1.36938 * 119.99785 * 239.99526 * 19 2 1 22 22 H 1.07997 * 120.00006 * 23.11962 * 21 19 2 23 23 C 1.38814 * 119.99782 * 203.12356 * 21 19 2 24 24 N 1.31618 * 120.00216 * 11.68799 * 23 21 19 25 25 Si 1.86805 * 119.99771 * 191.68778 * 23 21 19 26 26 H 1.48509 * 109.46986 * 59.99870 * 25 23 21 27 27 H 1.48500 * 109.47112 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47436 * 300.00188 * 25 23 21 29 29 H 1.09004 * 109.46895 * 299.99316 * 1 2 3 30 30 H 1.09000 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47397 * 59.99039 * 1 2 3 32 32 H 1.08997 * 109.47131 * 305.00294 * 4 2 1 33 33 H 1.09000 * 109.46627 * 65.00100 * 4 2 1 34 34 H 0.97002 * 120.00413 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.87446 * 224.67665 * 13 12 11 36 36 H 1.09002 * 109.52191 * 104.10381 * 13 12 11 37 37 H 1.09002 * 109.46392 * 180.02562 * 15 14 13 38 38 H 1.08994 * 109.47284 * 300.03447 * 15 14 13 39 39 H 1.08996 * 109.47020 * 60.04068 * 15 14 13 40 40 H 1.08999 * 109.47075 * 299.95888 * 16 14 13 41 41 H 1.08997 * 109.47460 * 59.96010 * 16 14 13 42 42 H 1.08999 * 109.46895 * 179.97438 * 16 14 13 43 43 H 1.09001 * 109.42818 * 170.06156 * 17 14 13 44 44 H 1.09002 * 109.38640 * 50.19554 * 17 14 13 45 45 H 1.08994 * 109.69815 * 282.91459 * 18 11 10 46 46 H 1.09002 * 109.69853 * 43.50554 * 18 11 10 47 47 H 1.09001 * 109.47561 * 93.93237 * 20 19 2 48 48 H 1.09002 * 109.46891 * 213.93557 * 20 19 2 49 49 H 1.09007 * 109.46802 * 333.93103 * 20 19 2 50 50 H 0.97000 * 119.99492 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.4999 -0.8263 -1.1908 6 6 4.1729 -1.4290 -2.1909 7 8 3.5686 -1.8848 -3.1414 8 6 5.6512 -1.5359 -2.1314 9 7 6.4413 -1.0960 -1.1769 10 8 7.6071 -1.3360 -1.4177 11 6 7.7460 -1.9754 -2.5777 12 6 6.5004 -2.1359 -3.0833 13 6 6.1828 -2.7995 -4.3912 14 6 7.4790 -2.8999 -5.2082 15 6 7.8883 -1.5059 -5.6883 16 6 7.2504 -3.8088 -6.4175 17 6 8.5909 -3.4849 -4.3331 18 6 8.9957 -2.4659 -3.2599 19 7 2.0183 -0.6907 1.1961 20 6 1.6645 -2.0934 1.4278 21 6 2.8056 -0.0253 2.0975 22 1 2.7707 1.0527 2.1525 23 6 3.6487 -0.7365 2.9404 24 7 3.8673 -2.0165 2.7257 25 14 4.4730 0.1233 4.3794 26 1 3.4349 0.6714 5.2891 27 1 5.3161 -0.8492 5.1201 28 1 5.3226 1.2312 3.8735 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 -0.8898 32 1 1.6053 -1.7197 -1.2954 33 1 1.7515 -0.1581 -2.1370 34 1 3.9824 -0.4628 -0.4318 35 1 5.4484 -2.2081 -4.9381 36 1 5.7866 -3.7980 -4.2062 37 1 8.8082 -1.5772 -6.2686 38 1 7.0968 -1.0893 -6.3112 39 1 8.0516 -0.8584 -4.8269 40 1 6.9591 -4.8019 -6.0757 41 1 6.4588 -3.3923 -7.0405 42 1 8.1703 -3.8797 -6.9978 43 1 9.4552 -3.7202 -4.9542 44 1 8.2317 -4.3947 -3.8521 45 1 9.5131 -1.6275 -3.7261 46 1 9.6502 -2.9419 -2.5297 47 1 2.4507 -2.7366 1.0327 48 1 1.5554 -2.2685 2.4981 49 1 0.7238 -2.3186 0.9250 50 1 4.4561 -2.5134 3.3150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505969134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:13 Heat of formation + Delta-G solvation = 31.353748 kcal Electronic energy + Delta-G solvation = -30467.633563 eV Core-core repulsion = 26498.372524 eV Total energy + Delta-G solvation = -3969.261039 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.88754 -39.26385 -38.97059 -36.69468 -33.81221 -33.67074 -32.90989 -31.99254 -30.32837 -29.29064 -27.53855 -27.37307 -26.18748 -25.99214 -24.04668 -23.45325 -22.76826 -21.65711 -19.92539 -19.32774 -18.32860 -17.62556 -17.26380 -16.90556 -16.19730 -15.46207 -15.20066 -15.18798 -14.69844 -14.54198 -14.50659 -13.87988 -13.78350 -13.43700 -13.24878 -13.21877 -12.81890 -12.64054 -12.29671 -12.22445 -12.16035 -12.09662 -11.94114 -11.80460 -11.60922 -11.26474 -11.06022 -10.86287 -10.80309 -10.76513 -10.69726 -10.53079 -10.40033 -10.30674 -9.98167 -9.85445 -9.78418 -9.73302 -8.97649 -8.56228 -8.43883 -6.78672 -5.72977 -3.21043 1.42513 1.86927 3.02189 3.39465 3.45058 3.45287 3.50044 3.65264 4.25338 4.44753 4.46249 4.48452 4.57469 4.86003 4.90711 5.05296 5.13232 5.19977 5.39379 5.40398 5.41668 5.46766 5.52379 5.55488 5.59386 5.63331 5.66339 5.72023 5.77852 5.85325 5.90032 5.95159 5.98613 6.07569 6.12740 6.13582 6.20221 6.28244 6.33413 6.38235 6.68712 6.79939 6.88615 7.04349 7.39832 7.74068 7.80717 8.02990 8.34559 8.37920 8.65645 9.22240 9.84791 10.34208 11.30503 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.003545 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.825946 B = 7896.156698 C = 9295.835349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.106 3.894 5 N -0.681 5.681 6 C 0.593 3.407 7 O -0.545 6.545 8 C -0.014 4.014 9 N -0.318 5.318 10 O 0.128 5.872 11 C -0.051 4.051 12 C -0.150 4.150 13 C -0.031 4.031 14 C -0.068 4.068 15 C -0.145 4.145 16 C -0.139 4.139 17 C -0.108 4.108 18 C -0.033 4.033 19 N -0.594 5.594 20 C 0.164 3.836 21 C -0.266 4.266 22 H 0.067 0.933 23 C 0.010 3.990 24 N -0.899 5.899 25 Si 0.903 3.097 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.282 1.282 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.422 0.578 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.091 0.909 47 H 0.027 0.973 48 H 0.043 0.957 49 H -0.002 1.002 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.811 -1.794 -16.594 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.020 4.020 5 N -0.332 5.332 6 C 0.376 3.624 7 O -0.423 6.423 8 C -0.172 4.172 9 N -0.018 5.018 10 O 0.053 5.947 11 C -0.115 4.115 12 C -0.154 4.154 13 C -0.068 4.068 14 C -0.069 4.069 15 C -0.202 4.202 16 C -0.197 4.197 17 C -0.145 4.145 18 C -0.071 4.071 19 N -0.317 5.317 20 C 0.019 3.981 21 C -0.396 4.396 22 H 0.085 0.915 23 C -0.189 4.189 24 N -0.543 5.543 25 Si 0.733 3.267 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.209 1.209 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.260 0.740 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.090 0.910 45 H 0.112 0.888 46 H 0.109 0.891 47 H 0.045 0.955 48 H 0.061 0.939 49 H 0.017 0.983 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.164 -1.587 -15.958 17.995 hybrid contribution 0.594 0.130 0.782 0.991 sum 8.758 -1.456 -15.177 17.583 Atomic orbital electron populations 1.22163 0.97324 1.01487 1.00702 1.20660 0.92710 0.95937 0.85862 0.91312 1.22055 0.79203 1.01314 0.99390 1.45771 1.08453 1.56422 1.22542 1.16849 0.83341 0.78977 0.83263 1.90711 1.68059 1.49445 1.34081 1.23094 0.96851 1.03749 0.93537 1.74751 0.88948 1.17599 1.20542 1.84731 1.22140 1.54967 1.32813 1.24043 0.98396 1.00908 0.88200 1.20552 0.90871 1.04281 0.99741 1.20041 0.96813 1.00474 0.89494 1.20726 0.94710 0.96160 0.95255 1.21961 1.01248 0.95779 1.01229 1.21829 1.01752 0.99218 0.96856 1.21719 0.98743 0.97909 0.96141 1.20222 0.90839 0.99462 0.96590 1.43933 1.57920 1.09678 1.20131 1.20748 0.93819 0.84480 0.99011 1.19145 1.16495 0.91092 1.12820 0.91535 1.25002 0.97589 0.96099 1.00251 1.70062 1.38679 1.07401 1.38166 0.86374 0.79106 0.78595 0.82658 1.21196 1.21693 1.20855 0.92345 0.92914 0.93531 0.92054 0.92515 0.74019 0.89327 0.90037 0.92492 0.92453 0.92327 0.92390 0.92262 0.92465 0.90190 0.90972 0.88806 0.89071 0.95473 0.93867 0.98336 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.18 37.16 0.34 -2.31 16 2 C 0.16 3.12 2.87 -67.93 -0.19 2.92 16 3 H 0.07 1.36 7.87 -51.93 -0.41 0.95 16 4 C 0.11 2.07 4.97 -4.04 -0.02 2.05 16 5 N -0.68 -14.39 5.39 -61.09 -0.33 -14.72 16 6 C 0.59 12.31 7.85 -12.11 -0.10 12.21 16 7 O -0.55 -11.73 16.09 5.36 0.09 -11.65 16 8 C -0.01 -0.26 7.19 -82.83 -0.60 -0.86 16 9 N -0.32 -6.24 11.89 33.29 0.40 -5.84 16 10 O 0.13 2.12 11.18 19.20 0.21 2.34 16 11 C -0.05 -0.69 6.64 -35.38 -0.23 -0.93 16 12 C -0.15 -2.30 5.61 -104.92 -0.59 -2.89 16 13 C -0.03 -0.39 4.41 -27.90 -0.12 -0.51 16 14 C -0.07 -0.61 0.77 -154.17 -0.12 -0.73 16 15 C -0.14 -1.25 7.73 37.16 0.29 -0.96 16 16 C -0.14 -1.04 8.44 37.16 0.31 -0.73 16 17 C -0.11 -0.84 4.82 -26.46 -0.13 -0.96 16 18 C -0.03 -0.29 5.66 -27.71 -0.16 -0.44 16 19 N -0.59 -14.26 2.29 -173.48 -0.40 -14.66 16 20 C 0.16 4.02 8.11 59.85 0.49 4.51 16 21 C -0.27 -7.04 9.32 -15.06 -0.14 -7.18 16 22 H 0.07 1.73 7.82 -52.49 -0.41 1.32 16 23 C 0.01 0.27 5.12 -17.43 -0.09 0.18 16 24 N -0.90 -25.77 10.65 55.49 0.59 -25.17 16 25 Si 0.90 21.82 29.57 -169.99 -5.03 16.79 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.89 6.66 -51.93 -0.35 0.55 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.25 7.84 -51.93 -0.41 0.85 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.42 9.74 7.66 -40.82 -0.31 9.43 16 35 H 0.09 1.23 7.81 -51.93 -0.41 0.82 16 36 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.57 5.67 -51.93 -0.29 0.27 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 44 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 45 H 0.09 0.66 6.99 -51.93 -0.36 0.30 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.03 0.74 7.41 -51.93 -0.38 0.35 16 48 H 0.04 1.14 7.23 -51.93 -0.38 0.77 16 49 H 0.00 -0.04 6.43 -51.93 -0.33 -0.37 16 50 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 392.38 15.07 5.91 5.91 Total: -1.00 -30.78 392.38 -7.85 -38.64 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -8.25 Total: 5.00 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.06 Total: 3.36 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.26 Total: -60.40 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.30 Total: -9.31 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.78 -7.85 -38.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505969134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.992 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds