Wall clock time and date at job start Tue Mar 31 2020 18:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47310 * 2 1 4 4 C 1.53005 * 109.46905 * 240.00472 * 2 1 3 5 5 N 1.46494 * 109.47060 * 184.99772 * 4 2 1 6 6 C 1.34776 * 120.00230 * 179.97438 * 5 4 2 7 7 O 1.21501 * 119.99562 * 0.02562 * 6 5 4 8 8 C 1.48331 * 120.00498 * 180.02562 * 6 5 4 9 9 N 1.31492 * 127.15028 * 0.02562 * 8 6 5 10 10 O 1.21437 * 111.52161 * 179.97438 * 9 8 6 11 11 C 1.33184 * 111.57038 * 359.96391 * 10 9 8 12 12 C 1.35376 * 106.63549 * 359.80514 * 11 10 9 13 13 C 1.50065 * 124.93406 * 179.41608 * 12 11 10 14 14 C 1.53553 * 108.29845 * 344.49319 * 13 12 11 15 15 C 1.53006 * 109.46247 * 288.94685 * 14 13 12 16 16 C 1.52999 * 109.46544 * 168.97078 * 14 13 12 17 17 C 1.53104 * 109.50586 * 48.95492 * 14 13 12 18 18 C 1.50601 * 129.60108 * 180.19006 * 11 10 9 19 19 N 1.46499 * 109.47067 * 120.00674 * 2 1 3 20 20 C 1.46500 * 120.00319 * 60.00214 * 19 2 1 21 21 C 1.36938 * 119.99785 * 239.99526 * 19 2 1 22 22 H 1.07997 * 120.00006 * 23.11962 * 21 19 2 23 23 C 1.38814 * 119.99782 * 203.12356 * 21 19 2 24 24 N 1.31618 * 120.00216 * 11.68799 * 23 21 19 25 25 Si 1.86805 * 119.99771 * 191.68778 * 23 21 19 26 26 H 1.48509 * 109.46986 * 59.99870 * 25 23 21 27 27 H 1.48500 * 109.47112 * 179.97438 * 25 23 21 28 28 H 1.48492 * 109.47436 * 300.00188 * 25 23 21 29 29 H 1.09004 * 109.46895 * 299.99316 * 1 2 3 30 30 H 1.09000 * 109.47310 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47397 * 59.99039 * 1 2 3 32 32 H 1.08997 * 109.47131 * 305.00294 * 4 2 1 33 33 H 1.09000 * 109.46627 * 65.00100 * 4 2 1 34 34 H 0.97002 * 120.00413 * 0.02562 * 5 4 2 35 35 H 1.09000 * 109.87446 * 224.67665 * 13 12 11 36 36 H 1.09002 * 109.52191 * 104.10381 * 13 12 11 37 37 H 1.09002 * 109.46392 * 180.02562 * 15 14 13 38 38 H 1.08994 * 109.47284 * 300.03447 * 15 14 13 39 39 H 1.08996 * 109.47020 * 60.04068 * 15 14 13 40 40 H 1.08999 * 109.47075 * 299.95888 * 16 14 13 41 41 H 1.08997 * 109.47460 * 59.96010 * 16 14 13 42 42 H 1.08999 * 109.46895 * 179.97438 * 16 14 13 43 43 H 1.09001 * 109.42818 * 170.06156 * 17 14 13 44 44 H 1.09002 * 109.38640 * 50.19554 * 17 14 13 45 45 H 1.08994 * 109.69815 * 282.91459 * 18 11 10 46 46 H 1.09002 * 109.69853 * 43.50554 * 18 11 10 47 47 H 1.09001 * 109.47561 * 93.93237 * 20 19 2 48 48 H 1.09002 * 109.46891 * 213.93557 * 20 19 2 49 49 H 1.09007 * 109.46802 * 333.93103 * 20 19 2 50 50 H 0.97000 * 119.99492 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.4999 -0.8263 -1.1908 6 6 4.1729 -1.4290 -2.1909 7 8 3.5686 -1.8848 -3.1414 8 6 5.6512 -1.5359 -2.1314 9 7 6.4413 -1.0960 -1.1769 10 8 7.6071 -1.3360 -1.4177 11 6 7.7460 -1.9754 -2.5777 12 6 6.5004 -2.1359 -3.0833 13 6 6.1828 -2.7995 -4.3912 14 6 7.4790 -2.8999 -5.2082 15 6 7.8883 -1.5059 -5.6883 16 6 7.2504 -3.8088 -6.4175 17 6 8.5909 -3.4849 -4.3331 18 6 8.9957 -2.4659 -3.2599 19 7 2.0183 -0.6907 1.1961 20 6 1.6645 -2.0934 1.4278 21 6 2.8056 -0.0253 2.0975 22 1 2.7707 1.0527 2.1525 23 6 3.6487 -0.7365 2.9404 24 7 3.8673 -2.0165 2.7257 25 14 4.4730 0.1233 4.3794 26 1 3.4349 0.6714 5.2891 27 1 5.3161 -0.8492 5.1201 28 1 5.3226 1.2312 3.8735 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 -0.8898 32 1 1.6053 -1.7197 -1.2954 33 1 1.7515 -0.1581 -2.1370 34 1 3.9824 -0.4628 -0.4318 35 1 5.4484 -2.2081 -4.9381 36 1 5.7866 -3.7980 -4.2062 37 1 8.8082 -1.5772 -6.2686 38 1 7.0968 -1.0893 -6.3112 39 1 8.0516 -0.8584 -4.8269 40 1 6.9591 -4.8019 -6.0757 41 1 6.4588 -3.3923 -7.0405 42 1 8.1703 -3.8797 -6.9978 43 1 9.4552 -3.7202 -4.9542 44 1 8.2317 -4.3947 -3.8521 45 1 9.5131 -1.6275 -3.7261 46 1 9.6502 -2.9419 -2.5297 47 1 2.4507 -2.7366 1.0327 48 1 1.5554 -2.2685 2.4981 49 1 0.7238 -2.3186 0.9250 50 1 4.4561 -2.5134 3.3150 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505969134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:12 Heat of formation + Delta-G solvation = 13.288579 kcal Electronic energy + Delta-G solvation = -30468.416928 eV Core-core repulsion = 26498.372524 eV Total energy + Delta-G solvation = -3970.044403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.21956 -40.76726 -39.93198 -38.45792 -35.52154 -35.07319 -33.92906 -33.68754 -31.41882 -31.08402 -28.48536 -28.13178 -28.04998 -27.56548 -25.32071 -24.81684 -24.27683 -22.82512 -21.38661 -20.96630 -19.40146 -18.96786 -18.88799 -18.41913 -17.61327 -17.19814 -16.95747 -16.33497 -15.94542 -15.71907 -15.55704 -15.31395 -15.22197 -14.72700 -14.50638 -14.35197 -14.27437 -14.00661 -13.90344 -13.68215 -13.27745 -13.05200 -12.90296 -12.83505 -12.65914 -12.62640 -12.58077 -12.53634 -12.33696 -12.23909 -12.17004 -11.79423 -11.67464 -11.59271 -11.54283 -11.46576 -11.23566 -11.15471 -10.63536 -10.12885 -10.09393 -8.80487 -7.81777 -5.30768 0.05653 0.63761 1.45865 1.46518 1.52694 1.86411 2.01094 2.13297 2.49597 2.93407 3.32885 3.46871 3.58140 3.61623 3.82106 3.93078 3.95740 4.02271 4.12720 4.22682 4.32612 4.41260 4.47532 4.55077 4.63091 4.64729 4.73791 4.74476 4.79510 4.80704 4.90537 4.92631 5.01109 5.04810 5.07764 5.15639 5.16741 5.21446 5.23927 5.25570 5.32489 5.39337 5.48341 5.52060 5.55476 5.64151 5.70035 6.31505 6.37033 6.91761 7.07842 7.14828 7.85922 8.30797 9.19776 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013991 B = 0.003545 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.825946 B = 7896.156698 C = 9295.835349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.155 3.845 3 H 0.070 0.930 4 C 0.111 3.889 5 N -0.689 5.689 6 C 0.588 3.412 7 O -0.559 6.559 8 C -0.045 4.045 9 N -0.357 5.357 10 O 0.131 5.869 11 C -0.030 4.030 12 C -0.163 4.163 13 C -0.029 4.029 14 C -0.063 4.063 15 C -0.143 4.143 16 C -0.137 4.137 17 C -0.105 4.105 18 C -0.034 4.034 19 N -0.603 5.603 20 C 0.183 3.817 21 C -0.265 4.265 22 H 0.071 0.929 23 C -0.041 4.041 24 N -0.928 5.928 25 Si 0.960 3.040 26 H -0.279 1.279 27 H -0.299 1.299 28 H -0.278 1.278 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.411 0.589 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.120 0.880 46 H 0.114 0.886 47 H -0.007 1.007 48 H 0.016 0.984 49 H 0.027 0.973 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.388 -1.404 -18.352 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.048 3.952 3 H 0.089 0.911 4 C -0.014 4.014 5 N -0.338 5.338 6 C 0.373 3.627 7 O -0.439 6.439 8 C -0.202 4.202 9 N -0.057 5.057 10 O 0.055 5.945 11 C -0.095 4.095 12 C -0.169 4.169 13 C -0.067 4.067 14 C -0.063 4.063 15 C -0.201 4.201 16 C -0.194 4.194 17 C -0.142 4.142 18 C -0.071 4.071 19 N -0.326 5.326 20 C 0.038 3.962 21 C -0.395 4.395 22 H 0.089 0.911 23 C -0.237 4.237 24 N -0.574 5.574 25 Si 0.789 3.211 26 H -0.205 1.205 27 H -0.226 1.226 28 H -0.203 1.203 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.247 0.753 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.135 0.865 44 H 0.084 0.916 45 H 0.138 0.862 46 H 0.132 0.868 47 H 0.011 0.989 48 H 0.035 0.965 49 H 0.045 0.955 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.695 -1.165 -17.741 20.251 hybrid contribution 0.105 0.031 1.247 1.251 sum 9.801 -1.134 -16.495 19.220 Atomic orbital electron populations 1.22038 0.94363 1.01880 1.02267 1.20881 0.94720 0.95405 0.84243 0.91132 1.22064 0.78441 1.00868 1.00062 1.45886 1.09063 1.56606 1.22212 1.17132 0.84302 0.78431 0.82870 1.90677 1.68717 1.50012 1.34452 1.23163 0.96312 1.05589 0.95128 1.74723 0.90032 1.19307 1.21655 1.84671 1.20910 1.54872 1.34031 1.25004 0.99820 0.98245 0.86389 1.20893 0.90943 1.04694 1.00361 1.20111 0.98815 0.99042 0.88713 1.20726 0.93010 0.97117 0.95469 1.21957 1.02249 0.94977 1.00877 1.21814 1.02763 0.98597 0.96202 1.21783 0.99446 0.97049 0.95947 1.20637 0.88757 1.00686 0.97032 1.44076 1.57758 1.09416 1.21386 1.20400 0.93913 0.84575 0.97273 1.19445 1.15852 0.91425 1.12802 0.91077 1.25661 0.98721 0.96672 1.02649 1.70241 1.39654 1.08657 1.38866 0.85455 0.78162 0.77445 0.80021 1.20547 1.22563 1.20344 0.92586 0.93069 0.90159 0.93234 0.90277 0.75283 0.91286 0.91040 0.89677 0.93426 0.93620 0.92484 0.92933 0.90079 0.86489 0.91586 0.86162 0.86791 0.98851 0.96488 0.95494 0.94687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 9.18 71.98 0.66 -3.97 16 2 C 0.15 6.05 2.87 44.99 0.13 6.18 16 3 H 0.07 2.73 7.87 -2.39 -0.02 2.72 16 4 C 0.11 4.32 4.97 86.38 0.43 4.75 16 5 N -0.69 -30.12 5.39 -465.50 -2.51 -32.63 16 6 C 0.59 25.53 7.85 86.93 0.68 26.21 16 7 O -0.56 -24.98 16.09 -3.72 -0.06 -25.04 16 8 C -0.05 -1.82 7.19 42.55 0.31 -1.51 16 9 N -0.36 -14.56 11.89 -48.95 -0.58 -15.14 16 10 O 0.13 4.36 11.18 78.73 0.88 5.24 16 11 C -0.03 -0.78 6.64 24.99 0.17 -0.62 16 12 C -0.16 -5.11 5.61 -20.05 -0.11 -5.22 16 13 C -0.03 -0.75 4.41 29.83 0.13 -0.62 16 14 C -0.06 -1.00 0.77 -51.96 -0.04 -1.04 16 15 C -0.14 -2.12 7.73 71.98 0.56 -1.56 16 16 C -0.14 -1.71 8.44 71.98 0.61 -1.10 16 17 C -0.10 -1.26 4.82 30.77 0.15 -1.11 16 18 C -0.03 -0.47 5.66 29.96 0.17 -0.30 16 19 N -0.60 -29.28 2.29 -702.76 -1.61 -30.88 16 20 C 0.18 9.23 8.11 127.77 1.04 10.27 16 21 C -0.27 -14.18 9.32 84.03 0.78 -13.40 16 22 H 0.07 3.69 7.82 -2.91 -0.02 3.66 16 23 C -0.04 -2.28 5.12 84.86 0.43 -1.84 16 24 N -0.93 -55.10 10.65 21.65 0.23 -54.87 16 25 Si 0.96 45.59 29.57 68.60 2.03 47.62 16 26 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 28 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 29 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.05 1.63 6.66 -2.39 -0.02 1.62 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.05 2.04 7.84 -2.39 -0.02 2.02 16 33 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 34 H 0.41 19.83 7.66 -92.71 -0.71 19.12 16 35 H 0.07 2.01 7.81 -2.39 -0.02 1.99 16 36 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 37 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 38 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.04 0.79 5.67 -2.39 -0.01 0.78 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.12 0.65 8.11 -2.39 -0.02 0.63 16 44 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 45 H 0.12 1.16 6.99 -2.39 -0.02 1.14 16 46 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 47 H -0.01 -0.39 7.41 -2.39 -0.02 -0.41 16 48 H 0.02 0.91 7.23 -2.39 -0.02 0.89 16 49 H 0.03 1.17 6.43 -2.38 -0.02 1.16 16 50 H 0.24 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -70.38 392.38 4.70 -65.68 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.23 Total: 24.91 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.09 Total: 15.11 kcal Atomic # 7 Polarization: -129.06 SS G_CDS: -4.46 Total: -133.52 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.82 Total: -19.80 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -70.38 4.70 -65.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505969134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.965 kcal (2) G-P(sol) polarization free energy of solvation -70.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds