Wall clock time and date at job start Tue Mar 31 2020 18:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47023 * 2 1 4 4 C 1.52993 * 109.47254 * 120.00467 * 2 1 3 5 5 N 1.46505 * 109.47263 * 174.99948 * 4 2 1 6 6 C 1.34778 * 120.00140 * 180.02562 * 5 4 2 7 7 O 1.21495 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.48327 * 119.99958 * 180.02562 * 6 5 4 9 9 N 1.31496 * 127.15538 * 0.02562 * 8 6 5 10 10 O 1.21431 * 111.52684 * 179.97438 * 9 8 6 11 11 C 1.33180 * 111.56638 * 359.96535 * 10 9 8 12 12 C 1.35371 * 106.64098 * 359.80398 * 11 10 9 13 13 C 1.50064 * 124.93867 * 179.40832 * 12 11 10 14 14 C 1.53550 * 108.29778 * 344.50270 * 13 12 11 15 15 C 1.53002 * 109.46312 * 288.94209 * 14 13 12 16 16 C 1.52999 * 109.46740 * 168.96607 * 14 13 12 17 17 C 1.53108 * 109.51067 * 48.95027 * 14 13 12 18 18 C 1.50607 * 129.59921 * 180.18669 * 11 10 9 19 19 N 1.46503 * 109.46960 * 240.00552 * 2 1 3 20 20 C 1.46495 * 119.99772 * 299.99935 * 19 2 1 21 21 C 1.36935 * 119.99718 * 119.99625 * 19 2 1 22 22 H 1.07998 * 120.00235 * 23.10623 * 21 19 2 23 23 C 1.38816 * 119.99962 * 203.09321 * 21 19 2 24 24 N 1.31623 * 119.99466 * 13.01363 * 23 21 19 25 25 Si 1.86797 * 120.00261 * 193.00469 * 23 21 19 26 26 H 1.48496 * 109.46947 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46809 * 120.00552 * 25 23 21 28 28 H 1.48494 * 109.47120 * 240.00460 * 25 23 21 29 29 H 1.08996 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46564 * 299.99674 * 1 2 3 31 31 H 1.09002 * 109.47157 * 59.99405 * 1 2 3 32 32 H 1.08996 * 109.47224 * 294.99851 * 4 2 1 33 33 H 1.09001 * 109.47434 * 55.00076 * 4 2 1 34 34 H 0.97001 * 119.99429 * 359.97438 * 5 4 2 35 35 H 1.08998 * 109.87916 * 224.67812 * 13 12 11 36 36 H 1.09002 * 109.51564 * 104.10838 * 13 12 11 37 37 H 1.08999 * 109.47124 * 180.02562 * 15 14 13 38 38 H 1.09007 * 109.47145 * 300.03686 * 15 14 13 39 39 H 1.08998 * 109.47327 * 60.03626 * 15 14 13 40 40 H 1.09001 * 109.46910 * 299.95908 * 16 14 13 41 41 H 1.09003 * 109.47127 * 59.95804 * 16 14 13 42 42 H 1.08997 * 109.46977 * 179.97438 * 16 14 13 43 43 H 1.08996 * 109.43283 * 170.06498 * 17 14 13 44 44 H 1.09004 * 109.38386 * 50.19541 * 17 14 13 45 45 H 1.08991 * 109.69794 * 282.92039 * 18 11 10 46 46 H 1.09006 * 109.69447 * 43.51043 * 18 11 10 47 47 H 1.09007 * 109.47262 * 95.12917 * 20 19 2 48 48 H 1.09003 * 109.46939 * 215.12551 * 20 19 2 49 49 H 1.08996 * 109.47534 * 335.12871 * 20 19 2 50 50 H 0.97005 * 119.99739 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4293 2.1905 7 8 3.5690 -1.8852 3.1409 8 6 5.6514 -1.5353 2.1313 9 7 6.4418 -1.0934 1.1778 10 8 7.6077 -1.3321 1.4191 11 6 7.7466 -1.9711 2.5793 12 6 6.5018 -2.1250 3.0886 13 6 6.1825 -2.8080 4.3861 14 6 7.4122 -3.6190 4.8194 15 6 7.5778 -4.8270 3.8951 16 6 7.2237 -4.1009 6.2592 17 6 8.6614 -2.7377 4.7357 18 6 8.9973 -2.4535 3.2658 19 7 2.0183 -0.6905 -1.1963 20 6 1.6644 -2.0930 -1.4282 21 6 2.8055 -0.0249 -2.0976 22 1 3.3701 0.8412 -1.7854 23 6 2.8781 -0.4635 -3.4126 24 7 2.0106 -1.3463 -3.8606 25 14 4.2066 0.1991 -4.5463 26 1 5.0494 1.1719 -3.8057 27 1 5.0523 -0.9230 -5.0267 28 1 3.5744 0.8748 -5.7077 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7517 -0.1585 2.1369 33 1 1.6055 -1.7199 1.2950 34 1 3.9824 -0.4628 0.4314 35 1 5.3303 -3.4746 4.2541 36 1 5.9499 -2.0598 5.1439 37 1 8.4504 -5.4030 4.2029 38 1 6.6885 -5.4546 3.9546 39 1 7.7124 -4.4839 2.8693 40 1 7.1061 -3.2404 6.9179 41 1 6.3344 -4.7284 6.3188 42 1 8.0964 -4.6770 6.5667 43 1 9.4997 -3.2512 5.2065 44 1 8.4756 -1.7967 5.2536 45 1 9.3505 -3.3665 2.7867 46 1 9.7683 -1.6852 3.2071 47 1 0.7890 -2.1446 -2.0757 48 1 2.5002 -2.6045 -1.9058 49 1 1.4406 -2.5736 -0.4758 50 1 2.0611 -1.6526 -4.7797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505969135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:16 Heat of formation + Delta-G solvation = 30.516903 kcal Electronic energy + Delta-G solvation = -30219.642583 eV Core-core repulsion = 26250.345256 eV Total energy + Delta-G solvation = -3969.297327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.05806 -39.40266 -39.10730 -36.74227 -33.98320 -33.79858 -33.02384 -31.98349 -30.45517 -29.33577 -27.60770 -27.47456 -26.25447 -26.01760 -24.15362 -23.52284 -22.85415 -21.80213 -20.09424 -19.37368 -18.44119 -17.79864 -17.39496 -16.92305 -16.34385 -15.56212 -15.36323 -15.25505 -14.80870 -14.63717 -14.51676 -13.97878 -13.89779 -13.55302 -13.35356 -13.33369 -12.77450 -12.75997 -12.39745 -12.30590 -12.23968 -12.05900 -12.01118 -11.88383 -11.45419 -11.40464 -11.07451 -10.95073 -10.89500 -10.83145 -10.74845 -10.63360 -10.40907 -10.26872 -10.14983 -9.90115 -9.89008 -9.77106 -9.12577 -8.63458 -8.56268 -6.79573 -5.73983 -3.21790 1.23673 1.71207 2.86162 3.33203 3.37637 3.44886 3.45564 3.47302 4.09823 4.34257 4.35984 4.45589 4.48218 4.75006 4.78727 4.95386 5.01487 5.08638 5.32013 5.36614 5.39894 5.40792 5.42286 5.47110 5.53015 5.54708 5.57451 5.61021 5.68496 5.74953 5.83863 5.88534 5.90615 6.04890 6.06195 6.12290 6.17364 6.19269 6.27358 6.42141 6.72461 6.80586 6.83614 6.99483 7.37459 7.72748 7.78876 7.83189 8.14918 8.36662 8.46296 9.21021 9.83778 10.32829 11.30158 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.003273 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.271437 B = 8552.801791 C = 9789.488781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.105 3.895 5 N -0.687 5.687 6 C 0.591 3.409 7 O -0.539 6.539 8 C -0.014 4.014 9 N -0.326 5.326 10 O 0.128 5.872 11 C -0.047 4.047 12 C -0.149 4.149 13 C -0.032 4.032 14 C -0.069 4.069 15 C -0.146 4.146 16 C -0.139 4.139 17 C -0.107 4.107 18 C -0.034 4.034 19 N -0.594 5.594 20 C 0.165 3.835 21 C -0.260 4.260 22 H 0.069 0.931 23 C 0.006 3.994 24 N -0.903 5.903 25 Si 0.902 3.098 26 H -0.277 1.277 27 H -0.290 1.290 28 H -0.291 1.291 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.417 0.583 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.031 0.969 48 H 0.038 0.962 49 H -0.002 1.002 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.768 -4.095 18.866 23.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.020 4.020 5 N -0.338 5.338 6 C 0.375 3.625 7 O -0.416 6.416 8 C -0.172 4.172 9 N -0.027 5.027 10 O 0.054 5.946 11 C -0.111 4.111 12 C -0.154 4.154 13 C -0.069 4.069 14 C -0.069 4.069 15 C -0.204 4.204 16 C -0.197 4.197 17 C -0.145 4.145 18 C -0.072 4.072 19 N -0.317 5.317 20 C 0.020 3.980 21 C -0.390 4.390 22 H 0.086 0.914 23 C -0.193 4.193 24 N -0.547 5.547 25 Si 0.732 3.268 26 H -0.202 1.202 27 H -0.216 1.216 28 H -0.218 1.218 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.254 0.746 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.016 0.984 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.001 -3.838 18.179 22.119 hybrid contribution 0.684 0.128 -0.706 0.991 sum 12.685 -3.710 17.474 21.909 Atomic orbital electron populations 1.22179 0.97246 1.01421 1.00656 1.20626 0.92716 0.95562 0.86295 0.91277 1.22073 0.78632 1.01639 0.99676 1.45826 1.08696 1.56704 1.22544 1.16866 0.83296 0.79082 0.83304 1.90731 1.67991 1.49036 1.33804 1.23124 0.96803 1.03793 0.93529 1.74696 0.89082 1.17772 1.21196 1.84715 1.21976 1.54908 1.32993 1.24071 0.98476 1.00422 0.88150 1.20576 0.90801 1.04193 0.99852 1.20058 0.97789 0.98092 0.90969 1.20731 0.94505 0.95438 0.96205 1.21974 1.01921 0.96968 0.99488 1.21831 1.01992 1.01239 0.94606 1.21719 0.97973 1.00495 0.94272 1.20253 0.90851 1.01768 0.94356 1.43986 1.58194 1.08025 1.21448 1.20725 0.99796 0.83345 0.94116 1.19227 1.18778 1.11691 0.89268 0.91366 1.25017 0.98254 0.99403 0.96600 1.70085 1.35059 1.34234 1.15357 0.86224 0.81482 0.78284 0.80820 1.20183 1.21632 1.21783 0.93118 0.93924 0.92091 0.92058 0.91709 0.74570 0.89198 0.90024 0.92412 0.92338 0.92325 0.92425 0.92196 0.92405 0.90099 0.91020 0.88644 0.89021 0.95075 0.94297 0.98350 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.19 37.16 0.34 -2.44 16 2 C 0.16 3.12 2.87 -67.93 -0.19 2.92 16 3 H 0.07 1.37 7.87 -51.93 -0.41 0.96 16 4 C 0.11 1.94 4.93 -4.04 -0.02 1.92 16 5 N -0.69 -13.17 5.39 -61.10 -0.33 -13.50 16 6 C 0.59 11.14 7.85 -12.11 -0.10 11.05 16 7 O -0.54 -10.74 16.09 5.37 0.09 -10.66 16 8 C -0.01 -0.24 7.19 -82.82 -0.60 -0.84 16 9 N -0.33 -5.64 11.89 33.29 0.40 -5.25 16 10 O 0.13 1.87 11.18 19.21 0.21 2.08 16 11 C -0.05 -0.56 6.64 -35.38 -0.23 -0.79 16 12 C -0.15 -2.05 5.61 -104.92 -0.59 -2.64 16 13 C -0.03 -0.36 4.41 -27.91 -0.12 -0.48 16 14 C -0.07 -0.55 0.77 -154.17 -0.12 -0.67 16 15 C -0.15 -1.21 7.73 37.16 0.29 -0.92 16 16 C -0.14 -0.93 8.44 37.16 0.31 -0.62 16 17 C -0.11 -0.70 4.82 -26.45 -0.13 -0.82 16 18 C -0.03 -0.25 5.66 -27.70 -0.16 -0.41 16 19 N -0.59 -14.33 2.28 -173.48 -0.40 -14.73 16 20 C 0.16 4.06 8.00 59.84 0.48 4.54 16 21 C -0.26 -6.94 9.31 -15.06 -0.14 -7.08 16 22 H 0.07 1.78 7.82 -52.49 -0.41 1.37 16 23 C 0.01 0.17 5.10 -17.43 -0.09 0.08 16 24 N -0.90 -26.18 10.72 55.49 0.59 -25.58 16 25 Si 0.90 21.94 29.57 -169.99 -5.03 16.91 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H 0.05 0.92 7.67 -51.93 -0.40 0.52 16 30 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.25 6.86 -51.93 -0.36 0.89 16 34 H 0.42 8.51 7.66 -40.82 -0.31 8.20 16 35 H 0.09 1.17 7.81 -51.93 -0.41 0.77 16 36 H 0.08 0.92 8.12 -51.93 -0.42 0.49 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.55 5.67 -51.93 -0.29 0.26 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.37 8.11 -51.93 -0.42 -0.05 16 44 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 45 H 0.10 0.59 6.99 -51.93 -0.36 0.23 16 46 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.03 0.83 7.34 -51.93 -0.38 0.45 16 48 H 0.04 1.05 7.35 -51.93 -0.38 0.66 16 49 H 0.00 -0.04 6.53 -51.93 -0.34 -0.38 16 50 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 392.48 15.07 5.91 5.91 Total: -1.00 -31.05 392.48 -7.86 -38.91 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -8.26 Total: 3.10 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.06 Total: 2.80 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: 0.27 Total: -59.06 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.30 Total: -8.58 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.05 -7.86 -38.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505969135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.429 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds